Prerequisites_BadlandsMarch2020.txt

sudo apt-get update -y

 

sudo apt-get install -y git python python-numpy python-scipy python-pip python-dev python-setuptools python-matplotlib libzmq3-dev pkg-config libfreetype6-dev libopenmpi-dev openmpi-bin libhdf5-dev liblapack-dev libedit-dev gfortran libnetcdf-dev python-mpltoolkits.basemap

 

##sudo apt-get install libpng3 llvm-3.6 # Currently causing crashes due to latest upgrade

 

sudo pip install -U setuptools

sudo pip install -U pip # fixes AssertionError in Ubuntu pip

sudo pip install enum34

 

sudo pip install jupyter markupsafe zmq singledispatch backports_abc certifi jsonschema ipyparallel path.py matplotlib mpi4py==1.3.1   
  


sudo pip install Cython==0.20 h5py scipy numpy ez_setup numba

sudo pip install plotly==2.3.0

 

# sudo pip install gFlex (If does not work, install using github Link https://github.com/awickert/gFlex) (download and install via the folder setup.py)

 

sudo pip install netcdf4 colorlover scikit-fuzzy pyevtk cmocean

pip install Pillow

sudo apt-get install python-tk 

pip install pandas

sudo apt-get install libgfortran3

pip install dbfpy (needed for continental Bayeslands Aus only)



new update - 2020

sudo pip install git+https://github.com/drufat/triangle ( no need for this )

sudo pip install tribad (ensure all import triangle is changed to import tribad as triangle in pyBadlands files - use Atom)
 

Step 2:

 

git clone https://github.com/badlands-model/badlands.git

 

cd BadLands/pyBadlands/libUtils

sudo make

 

# Go to parent directory of cloned repo such as home and run

sudo pip install -e paralleltemp_Bayeslands   (foldername - or pt-Bayeslands)

 

Step 3:

 

cd to home directory /home/

nano .bashrc

 

#add path at the end replacing 'home/danial' with relevant path of your local repo

 

export LD_LIBRARY_PATH="/home/danial/BadLands/pyBadlands/libUtils:$LD_LIBR$"   (should be your path)

 

export PYTHON_PATH="/home/danial/BadLands/pyBadlands/libUtils:$PYTHON_PATH"    (should be your path)