installation_requirements.txt

Installation Instructions: 
 
To run this you must have python installed on your system. This particular repository is written in Python 2.7 
 
Step 0: Required packages 
 
* sudo apt-get install python python-numpy python-scipy python-setuptools python-matplotlib 
* sudo apt-get update -y 
* sudo apt-get install -y git python-pip python-dev libzmq3-dev pkg-config libfreetype6-dev libpng3 libopenmpi-dev openmpi-bin libhdf5-dev liblapack-dev llvm-3.6 libedit-dev gfortran 
* sudo pip install -U setuptools 
* sudo pip install -U pip # fixes AssertionError in Ubuntu pip 
* sudo pip install enum34 jupyter markupsafe zmq singledispatch backports_abc certifi jsonschema ipyparallel path.py matplotlib mpi4py==1.3.1   pandas plotly 
* sudo apt-get install -y libnetcdf-dev python-mpltoolkits.basemap 
* sudo pip install Cython==0.20 h5py scipy numpy numba==0.23.1 netcdf4 colorlover cmocean scikit-fuzzy pyevtk 
* sudo pip install ez_setup 
* sudo pip install -e git+https://github.com/hplgit/odespy.git#egg=odespy
 
* git clone https://github.com/awickert/gFlex 
  cd gFlex 
  sudo python setup.py install 
 
** 
 
Step 1: Clone BayesReef Repository 
  git clone https://github.com/intelligentEarth/pt-Bayesreef.git 
 
Step 2: Install pt-Bayesreef
  sudo pip install -e pt-Bayesreef 
 
Step 3: Compile all files 
  cd pyReefCore 
  python -m compileall .