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semi-global parasail_sg_dx not reporting beg_ref correctly #97

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nh13 opened this issue Jan 26, 2023 · 0 comments
Open

semi-global parasail_sg_dx not reporting beg_ref correctly #97

nh13 opened this issue Jan 26, 2023 · 0 comments

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@nh13
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nh13 commented Jan 26, 2023

Example query GAAT and database/target AGAATA. The returned cigar via parasail_result_get_cigar is beg_query=0, beg_ref=0. The ends are fine (from the result) end_query=3, and end_ref=4. I would expect the following alignment:

q:  GAAT
    ||||
t: AGAATA

so I think the beg_ref should be 1 not 0. I am using v2.6.

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