test_ubuntu_san.yml

name: Check with Sanitizer

on:
  pull_request:
    branches: ["main", "development"]
  workflow_dispatch:

permissions:
  contents: read

jobs:
  check-as-cran:
    runs-on: ubuntu-latest
    container: 
      image: rocker/r-devel-san:latest

    steps:
      - name: install sudo, git, etc
        run: |
          apt update && apt install -y sudo
          sudo apt install -y git
          sudo apt install -y libssl-dev
          sudo apt install -y libxml2-dev
      - uses: actions/checkout@v3
        with:
          submodules: 'true'
      - uses: r-lib/actions/setup-pandoc@v1
      - name: install dependencies
        run: |
          install.packages(c("Rcpp", "RcppArmadillo", "RcppParallel", "ggplot2", "tidyr", "stringr", "numDeriv", "rlang", "mvtnorm", "knitr", "plotly", "rmarkdown", "Rsolnp", "lavaan", "devtools", "testthat", "rcmdcheck", "glmnet"))
        shell: RDscript {0}
      #- name: Run checks with extend compiler flags
      #  run: |
      #    withr::with_makevars(c("PKG_CXXFLAGS" = "$(SHLIB_OPENMP_CXXFLAGS) -I../inst/include/ -Wall -pedantic -fdiagnostics-color=always -fsanitize=address"),
      #                         devtools::check())
      #  shell: Rscript {0}
      - name: Check package
        run: RD CMD build . && RD CMD check $(ls -t . | head -n1)