environment.yml

name: AlphaCutter
channels:
  - salilab
  - defaults
dependencies:
  - _libgcc_mutex=0.1=main
  - _openmp_mutex=5.1=1_gnu
  - bzip2=1.0.8=h7b6447c_0
  - ca-certificates=2023.01.10=h06a4308_0
  - dssp=3.0.0=h3fd9d12_4
  - icu=58.2=he6710b0_3
  - ld_impl_linux-64=2.38=h1181459_1
  - libboost=1.73.0=h28710b8_12
  - libffi=3.4.2=h6a678d5_6
  - libgcc-ng=11.2.0=h1234567_1
  - libgomp=11.2.0=h1234567_1
  - libstdcxx-ng=11.2.0=h1234567_1
  - lz4-c=1.9.4=h6a678d5_0
  - ncurses=6.4=h6a678d5_0
  - openssl=1.1.1t=h7f8727e_0
  - pip=23.0.1=py38h06a4308_0
  - python=3.8.16=h7a1cb2a_3
  - readline=8.2=h5eee18b_0
  - setuptools=66.0.0=py38h06a4308_0
  - sqlite=3.41.2=h5eee18b_0
  - tk=8.6.12=h1ccaba5_0
  - wheel=0.38.4=py38h06a4308_0
  - xz=5.4.2=h5eee18b_0
  - zlib=1.2.13=h5eee18b_0
  - zstd=1.5.5=hc292b87_0
  - pip:
    - biopandas==0.4.1
    - biopython==1.81
    - ccmap==2.1.3
    - docopt==0.6.2
    - networkx==3.1
    - numpy==1.24.3
    - pandas==2.0.1
    - pcmap==0.5.0
    - pypstruct==0.1.2
    - python-dateutil==2.8.2
    - pytz==2023.3
    - scipy==1.8.0
    - six==1.16.0
    - tzdata==2023.3
prefix: /home/johnnytam100/anaconda3/envs/alphacutter