diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 79f85647..ef32135c 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -20,7 +20,7 @@ jobs:
       - uses: actions/checkout@v4
 
       - name: markdownlint
-        uses: DavidAnson/markdownlint-cli2-action@v16
+        uses: DavidAnson/markdownlint-cli2-action@v17
         with:
           config: ".markdownlint.yaml"
           globs: "**/*.md"
diff --git a/poetry.lock b/poetry.lock
index d2213605..60ffbd4e 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -50,13 +50,13 @@ reports = ["lxml"]
 
 [[package]]
 name = "basedpyright"
-version = "1.17.3"
+version = "1.18.3"
 description = "static type checking for Python (but based)"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "basedpyright-1.17.3-py3-none-any.whl", hash = "sha256:d597e2ee72288628e615969528e71a2b1ddf53ff65e2c81b70d9904316943c07"},
-    {file = "basedpyright-1.17.3.tar.gz", hash = "sha256:2c6685868442eb2b8463c98d0cfc6aab62bd25f899f3d6f3cb490d419560dd80"},
+    {file = "basedpyright-1.18.3-py3-none-any.whl", hash = "sha256:e2f060999004fe92d61d150d8e32fda35a73af2f237fdc41583d9cd7b08cb4c5"},
+    {file = "basedpyright-1.18.3.tar.gz", hash = "sha256:996215cee36a504447678d5d26ec0f7932d7c8f9ff187b69ca8314e11dd5034d"},
 ]
 
 [package.dependencies]
@@ -100,29 +100,29 @@ files = [
 
 [[package]]
 name = "filelock"
-version = "3.16.0"
+version = "3.16.1"
 description = "A platform independent file lock."
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "filelock-3.16.0-py3-none-any.whl", hash = "sha256:f6ed4c963184f4c84dd5557ce8fece759a3724b37b80c6c4f20a2f63a4dc6609"},
-    {file = "filelock-3.16.0.tar.gz", hash = "sha256:81de9eb8453c769b63369f87f11131a7ab04e367f8d97ad39dc230daa07e3bec"},
+    {file = "filelock-3.16.1-py3-none-any.whl", hash = "sha256:2082e5703d51fbf98ea75855d9d5527e33d8ff23099bec374a134febee6946b0"},
+    {file = "filelock-3.16.1.tar.gz", hash = "sha256:c249fbfcd5db47e5e2d6d62198e565475ee65e4831e2561c8e313fa7eb961435"},
 ]
 
 [package.extras]
-docs = ["furo (>=2024.8.6)", "sphinx (>=8.0.2)", "sphinx-autodoc-typehints (>=2.4)"]
-testing = ["covdefaults (>=2.3)", "coverage (>=7.6.1)", "diff-cover (>=9.1.1)", "pytest (>=8.3.2)", "pytest-asyncio (>=0.24)", "pytest-cov (>=5)", "pytest-mock (>=3.14)", "pytest-timeout (>=2.3.1)", "virtualenv (>=20.26.3)"]
+docs = ["furo (>=2024.8.6)", "sphinx (>=8.0.2)", "sphinx-autodoc-typehints (>=2.4.1)"]
+testing = ["covdefaults (>=2.3)", "coverage (>=7.6.1)", "diff-cover (>=9.2)", "pytest (>=8.3.3)", "pytest-asyncio (>=0.24)", "pytest-cov (>=5)", "pytest-mock (>=3.14)", "pytest-timeout (>=2.3.1)", "virtualenv (>=20.26.4)"]
 typing = ["typing-extensions (>=4.12.2)"]
 
 [[package]]
 name = "identify"
-version = "2.6.0"
+version = "2.6.1"
 description = "File identification library for Python"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "identify-2.6.0-py2.py3-none-any.whl", hash = "sha256:e79ae4406387a9d300332b5fd366d8994f1525e8414984e1a59e058b2eda2dd0"},
-    {file = "identify-2.6.0.tar.gz", hash = "sha256:cb171c685bdc31bcc4c1734698736a7d5b6c8bf2e0c15117f4d469c8640ae5cf"},
+    {file = "identify-2.6.1-py2.py3-none-any.whl", hash = "sha256:53863bcac7caf8d2ed85bd20312ea5dcfc22226800f6d6881f232d861db5a8f0"},
+    {file = "identify-2.6.1.tar.gz", hash = "sha256:91478c5fb7c3aac5ff7bf9b4344f803843dc586832d5f110d672b19aa1984c98"},
 ]
 
 [package.extras]
@@ -152,80 +152,80 @@ files = [
 
 [[package]]
 name = "nodejs-wheel-binaries"
-version = "20.17.0"
+version = "20.18.0"
 description = "unoffical Node.js package"
 optional = false
 python-versions = ">=3.7"
 files = [
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-    {file = "nodejs_wheel_binaries-20.17.0-py2.py3-none-macosx_11_0_arm64.whl", hash = "sha256:a661d2894b11dc886ae8c25727c3cdf1d54db982cdccfcddbb2dfe20dd249f3b"},
-    {file = "nodejs_wheel_binaries-20.17.0-py2.py3-none-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:e0144c91e9816cda969d78ba0903acc405c99e0a4bfffbdabac6b48b237335e7"},
-    {file = "nodejs_wheel_binaries-20.17.0-py2.py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:b87ee7e88bfece2d325949e4f0dedb942b7478c401fc4e6726c5270f5835a02d"},
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-    {file = "nodejs_wheel_binaries-20.17.0-py2.py3-none-win_amd64.whl", hash = "sha256:931558d528b976eb67ae1f68253df089e9d7d7267b6980fc580bfd31d67a0f5c"},
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+    {file = "nodejs_wheel_binaries-20.18.0-py2.py3-none-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:f62e38288d3a129b962dcba61b911d72b3d691935b8a2facfc0fa9433d9260b5"},
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+    {file = "nodejs_wheel_binaries-20.18.0-py2.py3-none-musllinux_1_2_x86_64.whl", hash = "sha256:bb4009d4d6abfb6765fabb62f322efdc520b6930d041af1d7f64d58445ce3e91"},
+    {file = "nodejs_wheel_binaries-20.18.0-py2.py3-none-win_amd64.whl", hash = "sha256:51c0cecb429a111351a54346909e672a57b96233a363c79cc0a2bbdbfa397304"},
+    {file = "nodejs_wheel_binaries-20.18.0.tar.gz", hash = "sha256:1d574a3d0e503b42414e80b4529da9fc71104b0d5e1d75606b3fb5802960fb6f"},
 ]
 
 [[package]]
 name = "numpy"
-version = "2.1.1"
+version = "2.1.2"
 description = "Fundamental package for array computing in Python"
 optional = false
 python-versions = ">=3.10"
 files = [
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+    {file = "ruff-0.6.9-py3-none-win32.whl", hash = "sha256:eb61ec9bdb2506cffd492e05ac40e5bc6284873aceb605503d8494180d6fc84d"},
+    {file = "ruff-0.6.9-py3-none-win_amd64.whl", hash = "sha256:785d31851c1ae91f45b3d8fe23b8ae4b5170089021fbb42402d811135f0b7117"},
+    {file = "ruff-0.6.9-py3-none-win_arm64.whl", hash = "sha256:a9641e31476d601f83cd602608739a0840e348bda93fec9f1ee816f8b6798b93"},
+    {file = "ruff-0.6.9.tar.gz", hash = "sha256:b076ef717a8e5bc819514ee1d602bbdca5b4420ae13a9cf61a0c0a4f53a2baa2"},
 ]
 
 [[package]]
@@ -449,13 +450,13 @@ test = ["Cython", "array-api-strict (>=2.0)", "asv", "gmpy2", "hypothesis (>=6.3
 
 [[package]]
 name = "tomli"
-version = "2.0.1"
+version = "2.0.2"
 description = "A lil' TOML parser"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "tomli-2.0.1-py3-none-any.whl", hash = "sha256:939de3e7a6161af0c887ef91b7d41a53e7c5a1ca976325f429cb46ea9bc30ecc"},
-    {file = "tomli-2.0.1.tar.gz", hash = "sha256:de526c12914f0c550d15924c62d72abc48d6fe7364aa87328337a31007fe8a4f"},
+    {file = "tomli-2.0.2-py3-none-any.whl", hash = "sha256:2ebe24485c53d303f690b0ec092806a085f07af5a5aa1464f3931eec36caaa38"},
+    {file = "tomli-2.0.2.tar.gz", hash = "sha256:d46d457a85337051c36524bc5349dd91b1877838e2979ac5ced3e710ed8a60ed"},
 ]
 
 [[package]]
@@ -471,13 +472,13 @@ files = [
 
 [[package]]
 name = "virtualenv"
-version = "20.26.4"
+version = "20.26.6"
 description = "Virtual Python Environment builder"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "virtualenv-20.26.4-py3-none-any.whl", hash = "sha256:48f2695d9809277003f30776d155615ffc11328e6a0a8c1f0ec80188d7874a55"},
-    {file = "virtualenv-20.26.4.tar.gz", hash = "sha256:c17f4e0f3e6036e9f26700446f85c76ab11df65ff6d8a9cbfad9f71aabfcf23c"},
+    {file = "virtualenv-20.26.6-py3-none-any.whl", hash = "sha256:7345cc5b25405607a624d8418154577459c3e0277f5466dd79c49d5e492995f2"},
+    {file = "virtualenv-20.26.6.tar.gz", hash = "sha256:280aede09a2a5c317e409a00102e7077c6432c5a38f0ef938e643805a7ad2c48"},
 ]
 
 [package.dependencies]
@@ -492,4 +493,4 @@ test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess
 [metadata]
 lock-version = "2.0"
 python-versions = "^3.10.1"
-content-hash = "3b035c7c932ec8d45e9d8a61a43b8b13dc4166c4f6bfc114a9a5e0217cdc8b3f"
+content-hash = "a7af0dcf25e7e55b954a9e037572d08a94adbbc3f07e0a80a4901701d2d66b3c"
diff --git a/pyproject.toml b/pyproject.toml
index 04035fd3..88fa3296 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -36,12 +36,12 @@ scipy = "^1.14.1"
 
 [tool.poetry.group.lint.dependencies]
 basedmypy = "^2.6.0"
-basedpyright = "^1.17.3"
-ruff = "^0.6.4"
+basedpyright = "^1.18.3"
+ruff = "^0.6.9"
 
 [tool.poetry.group.dev.dependencies]
-poethepoet = "^0.28.0"
-pre-commit = "^3.8.0"
+poethepoet = "^0.29.0"
+pre-commit = "^4.0.0"
 
 [tool.poe.executor]
 type = "poetry"
@@ -83,8 +83,10 @@ stubtest
 """
 args = [{name = "modules", positional = true, multiple = true, default = "scipy"}]
 
+
 [tool.mypy]
 python_version = "3.10"
+strict = true
 disable_bytearray_promotion = true
 disable_memoryview_promotion = true
 disallow_any_explicit = false  # no other way to type e.g. `float64 <: number[Any]`
diff --git a/tests/stubtest/allowlist.txt b/tests/stubtest/allowlist.txt
index eeb54540..439116ef 100644
--- a/tests/stubtest/allowlist.txt
+++ b/tests/stubtest/allowlist.txt
@@ -6,7 +6,6 @@ scipy.optimize._typing
 # internal testing
 scipy._lib.test
 scipy._lib.tests.*
-# scipy.cluster.PytestTester
 scipy.cluster.tests.*
 scipy.conftest
 scipy.constants.tests.*
@@ -20,7 +19,6 @@ scipy.integrate.tests.*
 scipy.interpolate.interpnd.__test__
 scipy.interpolate.tests.*
 scipy.io._harwell_boeing.tests.*
-scipy.io.arff.test_weka
 scipy.io.arff.tests.*
 scipy.io.matlab.tests.*
 scipy.io.tests.*