From af3e561e1c4b3a05ab4694a4e8bcbe9e61ae24f9 Mon Sep 17 00:00:00 2001
From: js2264 <jacquesserizay@gmail.com>
Date: Sat, 3 Jun 2023 16:47:14 +0200
Subject: [PATCH] deps: add TopDom and GOTHiC

---
 DESCRIPTION          | 2 ++
 interoperability.qmd | 1 -
 matrix-centric.qmd   | 2 +-
 3 files changed, 3 insertions(+), 2 deletions(-)

diff --git a/DESCRIPTION b/DESCRIPTION
index 5627e8b..c86487b 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -24,6 +24,8 @@ Imports:
     strawr, 
     hicrep,
     multiHiCcompare,
+    TopDom, 
+    GOTHiC, OTH
     BSgenome.Hsapiens.UCSC.hg38, 
     ggbio,
     cowplot,
diff --git a/interoperability.qmd b/interoperability.qmd
index 14dfa82..fcda589 100644
--- a/interoperability.qmd
+++ b/interoperability.qmd
@@ -28,7 +28,6 @@ illustrated here:
 source("_common.R")
 library(ggplot2)
 library(purrr)
-library(tidyverse)
 library(GenomicRanges)
 library(InteractionSet)
 library(HiCExperiment)
diff --git a/matrix-centric.qmd b/matrix-centric.qmd
index 4e21d67..6d5f243 100644
--- a/matrix-centric.qmd
+++ b/matrix-centric.qmd
@@ -3,7 +3,7 @@ reference-section-title: References
 bibliography: bibliography.bib
 ---
 
-# Contact matrix-centric analysis
+# Matrix-centric analysis
 
 ```{r}
 #| echo: false