ERROR: Error building Baysor

[nvall]

Hi,
I just tried to install Baysor but it seems that a extra ; in one file. I may have identified it in boundary_estimation.jl.
Would you have any insights?
Thank you so much
Nicolas

ERROR: Error building `Baysor`:
[ Info: disable lazy package loading: environment variable `LazyModules_lazyload=false` is detected
ERROR: LoadError: syntax: unexpected ";"
Stacktrace:
  [1] top-level scope
    @ ~/.julia/packages/Baysor/7LPmz/src/processing/data_processing/boundary_estimation.jl:269
  [2] include(mod::Module, _path::String)
    @ Base ./Base.jl:418
  [3] include(x::String)
    @ Baysor.Processing ~/.julia/packages/Baysor/7LPmz/src/processing/Processing.jl:1
  [4] top-level scope
    @ ~/.julia/packages/Baysor/7LPmz/src/processing/Processing.jl:42
  [5] include(mod::Module, _path::String)
    @ Base ./Base.jl:418
  [6] include(x::String)
    @ Baysor ~/.julia/packages/Baysor/7LPmz/src/Baysor.jl:1
  [7] top-level scope
    @ ~/.julia/packages/Baysor/7LPmz/src/Baysor.jl:17
  [8] include
    @ ./Base.jl:418 [inlined]
  [9] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt64}}, source::String)
    @ Base ./loading.jl:1318
 [10] top-level scope
    @ none:1
 [11] eval
    @ ./boot.jl:373 [inlined]
 [12] eval(x::Expr)
    @ Base.MainInclude ./client.jl:453
 [13] top-level scope
    @ none:1
in expression starting at /Users/nivall/.julia/packages/Baysor/7LPmz/src/processing/data_processing/boundary_estimation.jl:269
in expression starting at /Users/nivall/.julia/packages/Baysor/7LPmz/src/processing/Processing.jl:1
in expression starting at /Users/nivall/.julia/packages/Baysor/7LPmz/src/Baysor.jl:1
ERROR: LoadError: Failed to precompile Baysor [cc9f9468-1fbe-11e9-0acf-e9460511877c] to /Users/nivall/.julia/compiled/v1.7/Baysor/jl_FOOqPc.
Stacktrace:
 [1] error(s::String)
   @ Base ./error.jl:33
 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, ignore_loaded_modules::Bool)
   @ Base ./loading.jl:1466
 [3] compilecache(pkg::Base.PkgId, path::String)
   @ Base ./loading.jl:1410
 [4] _require(pkg::Base.PkgId)
   @ Base ./loading.jl:1120
 [5] require(uuidkey::Base.PkgId)
   @ Base ./loading.jl:1013
 [6] require(into::Module, mod::Symbol)
   @ Base ./loading.jl:997
 [7] include(fname::String)
   @ Base.MainInclude ./client.jl:451
 [8] top-level scope
   @ none:5
in expression starting at /Users/nivall/.julia/packages/Baysor/7LPmz/deps/build.jl:3
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/Types.jl:68
  [2] (::Pkg.Operations.var"#62#67"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec})()
    @ Pkg.Operations /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:962
  [3] withenv(::Pkg.Operations.var"#62#67"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, ::Pair{String, String}, ::Vararg{Pair{String}})
    @ Base ./env.jl:172
  [4] (::Pkg.Operations.var"#99#103"{String, Bool, Bool, Bool, Pkg.Operations.var"#62#67"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.PackageSpec})()
    @ Pkg.Operations /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:1506
  [5] with_temp_env(fn::Pkg.Operations.var"#99#103"{String, Bool, Bool, Bool, Pkg.Operations.var"#62#67"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.PackageSpec}, temp_env::String)
    @ Pkg.Operations /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:1390
  [6] (::Pkg.Operations.var"#98#102"{Bool, Bool, Bool, Pkg.Operations.var"#62#67"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Pkg.Types.Project, String})(tmp::String)
    @ Pkg.Operations /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:1469
  [7] mktempdir(fn::Pkg.Operations.var"#98#102"{Bool, Bool, Bool, Pkg.Operations.var"#62#67"{Bool, Pkg.Types.Context, String, Pkg.Types.PackageSpec}, Pkg.Types.Context, Pkg.Types.PackageSpec, String, Pkg.Types.Project, String}, parent::String; prefix::String)
    @ Base.Filesystem ./file.jl:750
  [8] mktempdir(fn::Function, parent::String) (repeats 2 times)
    @ Base.Filesystem ./file.jl:748
  [9] sandbox(fn::Function, ctx::Pkg.Types.Context, target::Pkg.Types.PackageSpec, target_path::String, sandbox_path::String, sandbox_project_override::Pkg.Types.Project; force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool)
    @ Pkg.Operations /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:1435
 [10] sandbox(fn::Function, ctx::Pkg.Types.Context, target::Pkg.Types.PackageSpec, target_path::String, sandbox_path::String, sandbox_project_override::Pkg.Types.Project)
    @ Pkg.Operations /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:1432
 [11] build_versions(ctx::Pkg.Types.Context, uuids::Set{Base.UUID}; verbose::Bool)
    @ Pkg.Operations /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:943
 [12] build(ctx::Pkg.Types.Context, uuids::Set{Base.UUID}, verbose::Bool)
    @ Pkg.Operations /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/Operations.jl:822
 [13] build(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; verbose::Bool, kwargs::Base.Pairs{Symbol, Base.TTY, Tuple{Symbol}, NamedTuple{(:io,), Tuple{Base.TTY}}})
    @ Pkg.API /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/API.jl:992
 [14] build(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.TTY, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
    @ Pkg.API /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/API.jl:149
 [15] build(pkgs::Vector{Pkg.Types.PackageSpec})
    @ Pkg.API /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/API.jl:144
 [16] build(; name::Nothing, uuid::Nothing, version::Nothing, url::Nothing, rev::Nothing, path::Nothing, mode::Pkg.Types.PackageMode, subdir::Nothing, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
    @ Pkg.API /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/API.jl:164
 [17] build()
    @ Pkg.API /Applications/Julia-1.7.app/Contents/Resources/julia/share/julia/stdlib/v1.7/Pkg/src/API.jl:158
 [18] top-level scope
    @ none:1

versioninfo output is

Julia Version 1.7.3
Commit 742b9abb4d (2022-05-06 12:58 UTC)
Platform Info:
  OS: macOS (x86_64-apple-darwin21.4.0)
  CPU: Apple M4
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-12.0.1 (ORCJIT, westmere)

[nvall]

Hi,
I don't know how this worked but I removed then installed Baysor in an isolated environment

using Pkg
Pkg.rm("Baysor")
Pkg.gc()
Pkg.activate("new_baysor_env"; shared=false)
Pkg.add(PackageSpec(url="https://github.com/kharchenkolab/Baysor.git"))

Then exit() to open a new Julia session

using Pkg
Pkg.activate("~/.julia/environments/_your_Julia_version")
Pkg.add(PackageSpec(url="https://github.com/kharchenkolab/Baysor.git"))
Pkg.precompile()

Hope this helps other users.