DESCRIPTION

Package: BCalm
Version: 0.99.0
Title: Barcode Analysis using linear models
Description: Tools for data management, count preprocessing, and differential analysis in massively parallel report assays (MPRA).
Authors@R: c(
      person("Pia", "Keukeleire", role = c("cre", "aut"), email = "pia.keukeleire@uksh.de"),
      person("Martin", "Kircher", role = "aut"))
Depends:
      R (>= 3.5),
      methods,
      BiocGenerics,
      SummarizedExperiment,
      limma,
      curl
Suggests:
      BiocStyle,
      knitr,
      rmarkdown,
      RUnit,
      testthat (>= 3.0.0),
      ggplot2,
      kableExtra
Imports:
      mpra,
      S4Vectors,
      scales,
      stats,
      graphics,
      statmod,
      tidyr,
      GenomeInfoDb,
      IRanges,
      GenomicRanges,
      Biobase,
      DelayedArray
Collate:
      mpra_set.R
      utils.R
      fit.R
      preprocess.R
      analyze.R
VignetteBuilder: knitr
License: MIT
URL: https://github.com/kircherlab/BCalm
BugReports: https://github.com/kircherlab/BCalm/issues
biocViews: Software, GeneRegulation, Sequencing, FunctionalGenomics
Config/testthat/edition: 3
LazyData: true