_toc.yml

# Table of contents
# Learn more at https://jupyterbook.org/customize/toc.html

format: jb-book
root: docs/intro
parts:
- caption: Overview
  chapters:
  - file: docs/overview
  - file: docs/windows
  - file: docs/linux
  - file: docs/access
- caption: Using SLURM
  chapters:
  - file: docs/biohpc/slurm
  - file: docs/biohpc/slurm-quick-start
  - file: docs/biohpc/software
  - file: docs/biohpc/sbatch
  - file: docs/biohpc/stata
  - file: docs/biohpc/matlab
  - file: docs/biohpc/julia
- caption: Reserving a node on BioHPC Linux
  chapters:
  - file: docs/biohpc/reserving
- caption: How to connect to BioHPC
  chapters:
  - file: docs/ssh
  - file: docs/vnc
  - file: docs/vscode
- caption: How to transfer data to and from BioHPC
  chapters:
  - file: docs/transfer
- caption: Command reference
  chapters:
  - file: docs/commands/biohpcres
  - file: docs/commands/srun
  - file: docs/commands/tmux
  - file: docs/commands/manage_slurm
- caption: Getting Help
  chapters:
  - file: docs/tips-and-tricks
  - file: docs/help