1.How to upload the files?
-
We support the .json and .txt files, you should upload them one by one; If you upload the invalid files or upload the files by a invalid order, we will find them and notice you.
+
+ We support the .json and .txt files, you should upload them one by one; If you upload the invalid files or upload the files by a invalid order, we will find them and notice you.
+
+ Note: Please make the data conform to the following format.
+
+ gene1 and gene2:
+ {
+ "Sample000001":1.71018781553424,
+ "Sample000002":3.57312022243706,
+ "Sample000003":1.81645208181843
+ }
+
+ inform:
+ {
+ "Sample000001": {"category": "Type1", "detail": "TBA"},
+ "Sample000002": {"category": "Type6", "detail": "TBA"},
+ "Sample000003": {"category": "Type2", "detail": "TBA"}
+ }
+
2. How does it work?
-
According to your gene1 file, we look for the data of gene 2 and information, and if we find them, we will output them. You can use "
settings" to add the new search rule by inputting your sample.
the t tableTips: Google Chrome is our best supported browser. It also works in Firefox, Opera, Safari and Internet Explorer 10.
-
3.Error code
+
+ According to your gene1 file, we look for the data of gene 2 and information. If you want to generate scatter diagram, you need to upload at least gene1 and gene2 files.
+ You can press "
settings" button in the home page to check or add the search rule of sample.
+ You can use
t table to look up the T distribution.
+
Tips: Google Chrome is our best supported browser. It also works in Firefox, Opera, Safari and Internet Explorer 10.
+
3. What can you do ?
+
+ This software can generate gene scatter map and calculate relevant data for you.
+ Scatter map enables users to display the gene samples of the desired tissues by clicking or searching for them. You can touch the point to display the details of the sample point.
+ Table display below scatter shows the correlation coefficient, number and P value for each tissue. Click the corresponding column in the header to display the data in the table in ascending or reverse order according to this column.
+
+
4. Error code
'100': 'your browser does not support FileReader objects'
'101': 'lack gene1 file'
@@ -30,10 +58,11 @@
3.Error code
'105': 'invalid json format in gene2 file'
'106': 'invalid json format in information file'
'108': 'invalid gene1, gene2, or information uploading order, please upload again by right order'
-
4. How to contact us?
-
You can send an email to xumengqi@zjnu.edu.cn for help and we will reply to you as soon as possible.
Last modified:18 May 2019.
-
5. Privacy Notice
+
5. How to contact us?
+
You can send an email to
xumengqi@zjnu.edu.cn for help and we will reply to you as soon as possible.
Last modified:23 March 2020.
+
6. Privacy Notice
Source files are only used for data processing of visualized scatter maps of gene expression. Programs do not store, disseminate or modify any source files.
+
1.How to upload the files?
- We support the .json and .txt files, you should upload them one by one; If you upload the invalid files or upload the files by a invalid order, we will find them and notice you.
+ We support the .json and files, you should upload them one by one; If you upload the invalid files or upload the files by a invalid order, we will find them and notice you.
Note: Please make the data conform to the following format.
@@ -51,9 +51,9 @@
3. What can you do ?
4. Error code
'100': 'your browser does not support FileReader objects'
- '101': 'lack gene1 file'
- '102': 'lack gene2 file'
- '103': 'lack information file'
+ '101': 'missing gene1 file'
+ '102': 'missing gene2 file'
+ '103': 'missing information file'
'104': 'invalid json format in gene1 file'
'105': 'invalid json format in gene2 file'
'106': 'invalid json format in information file'
@@ -61,7 +61,7 @@
4. Error code
5. How to contact us?
You can send an email to
xumengqi@zjnu.edu.cn for help and we will reply to you as soon as possible.
Last modified:23 March 2020.
6. Privacy Notice
-
Source files are only used for data processing of visualized scatter maps of gene expression. Programs do not store, disseminate or modify any source files.
+
Source files are only used for data processing of visualized scatter maps of gene expression. Programs do not store, disseminate or modify any data files you uploaded.
From 1efa51dc85a4d55dd9030853aba72da609380ed7 Mon Sep 17 00:00:00 2001
From: KerenHHH <1461938594@qq.com>
Date: Fri, 22 May 2020 08:39:29 +0800
Subject: [PATCH 3/4] =?UTF-8?q?=E4=BF=AE=E6=AD=A3=E4=B8=80=E4=BA=9B?=
=?UTF-8?q?=E8=A1=A8=E8=BE=BE=E9=94=99=E8=AF=AF?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
---
gene_expression_scatter_plot/support.html | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/gene_expression_scatter_plot/support.html b/gene_expression_scatter_plot/support.html
index b0c6fb7..1c24352 100644
--- a/gene_expression_scatter_plot/support.html
+++ b/gene_expression_scatter_plot/support.html
@@ -18,7 +18,7 @@
Guide:
1.How to upload the files?
- We support the .json and files, you should upload them one by one; If you upload the invalid files or upload the files by a invalid order, we will find them and notice you.
+ We support the .json files, you should upload them one by one; If you upload the invalid files or upload the files by a invalid order, we will find them and notice you.
Note: Please make the data conform to the following format.
From 5718feb9dcf4f044ca374b92c1ce129f6f851b69 Mon Sep 17 00:00:00 2001
From: KerenHHH <1461938594@qq.com>
Date: Mon, 25 May 2020 14:29:47 +0800
Subject: [PATCH 4/4] add srs and test
---
gene_expression_scatter_plot/test/srs.txt | 13 ++++++
gene_expression_scatter_plot/test/test.txt | 47 ++++++++++++++++++++++
2 files changed, 60 insertions(+)
diff --git a/gene_expression_scatter_plot/test/srs.txt b/gene_expression_scatter_plot/test/srs.txt
index e69de29..94afe12 100644
--- a/gene_expression_scatter_plot/test/srs.txt
+++ b/gene_expression_scatter_plot/test/srs.txt
@@ -0,0 +1,13 @@
+@RQ08
+
+定义Javascript函数。
+
+
+@RQ09
+
+计算相关性系数的emprical p-value
+
+
+@RQ010
+
+完善Support界面。
diff --git a/gene_expression_scatter_plot/test/test.txt b/gene_expression_scatter_plot/test/test.txt
index e69de29..6a25ac8 100644
--- a/gene_expression_scatter_plot/test/test.txt
+++ b/gene_expression_scatter_plot/test/test.txt
@@ -0,0 +1,47 @@
+@T001
+
+Test title: test case for requirement 9
+
+Test for: RQ09
+
+Description: Empirical P value 是为实际观测数据而不是理论数据计算的P值.这里测试软件所计算的值是否正确
+
+Rationale:In statistics, significance testing is carried out by taking up two hypotheses to explain the statistical model for the process. First is null hypothesis which gives the simplest model. Another is alternative hypothesis, which is true if null hypothesis is proved wrong. These two hypotheses are tested against each other in terms of P- value.
+
+Input:g1.json g2.json info.json
+Expected output: 表格中显示正确、较精确的Empirical P value
+
+Actual output:Empirical P value能正常显示在表格中，并较精确。
+
+
+Diagnosis:
+
+Status:
+
+Signature: He Keren
+
+Date:
+
+
+@T002
+
+Test title: test case for requirement 10
+
+Test for: RQ10
+
+Description: support页面显示详细的软件概述， 包括如何操作该软件，输入输出的格式，使用的技术等等。
+
+Input:无
+
+Expected output: support页面能显示正确的概述
+
+Actual output: support页面能显示正确的概述
+
+
+Diagnosis:
+
+Status:
+
+Signature: He Keren
+
+Date: