diff --git a/NEWS.md b/NEWS.md index b8bdd62f..5bc0d765 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,28 @@ +Release 2.1-r311 (25 August 2017) +--------------------------------- + +This release adds spliced alignment for long noisy RNA-seq reads. On a SMRT +Iso-Seq and a Oxford Nanopore data sets, minimap2 appears to outperform +traditional mRNA aligners. For DNA alignment, this release gives almost +identical output to v2.0. Other changes include: + + * Added option `-R` to set the read group header line in SAM. + + * Optionally output the `cs:Z` tag in PAF to encode both the query and the + reference sequences in the alignment. + + * Fixed an issue where DP alignment uses excessive memory. + +The minimap2 technical report has been updated with more details and the +evaluation of spliced alignment: + + * Li, H. (2017). Minimap2: fast pairwise alignment for long nucleotide + sequences. [arXiv:1708.01492v2](https://arxiv.org/abs/1708.01492v2). + +(2.1: 25 August 2017, r311) + + + Release 2.0-r275 (8 August 2017) -------------------------------- diff --git a/main.c b/main.c index b0405206..7199a070 100644 --- a/main.c +++ b/main.c @@ -8,7 +8,7 @@ #include "minimap.h" #include "mmpriv.h" -#define MM_VERSION "2.0-r309-dirty" +#define MM_VERSION "2.1-r311" void liftrlimit() { diff --git a/minimap2.1 b/minimap2.1 index d5535c08..61a0bdb5 100644 --- a/minimap2.1 +++ b/minimap2.1 @@ -1,4 +1,4 @@ -.TH minimap2 1 "25 August 2017" "minimap2-2.0-r309-dirty" "Bioinformatics tools" +.TH minimap2 1 "25 August 2017" "minimap2-2.1-r311" "Bioinformatics tools" .SH NAME .PP minimap2 - mapping and alignment between collections of DNA sequences