diff --git a/src/sssom/obo.epm.json b/src/sssom/obo.epm.json index a7be4c33..e8d1adc7 100644 --- a/src/sssom/obo.epm.json +++ b/src/sssom/obo.epm.json @@ -1,5 +1,6 @@ [ { + "pattern": "^B\\d{5}$", "prefix": "3dmet", "uri_prefix": "http://www.3dmet.dna.affrc.go.jp/cgi/show_data.php?acc=", "uri_prefix_synonyms": [ @@ -17,6 +18,7 @@ ] }, { + "pattern": "^4DN[A-Z]{2}[A-Z0-9]{7}$", "prefix": "4dn.biosource", "prefix_synonyms": [ "4DN" @@ -48,17 +50,7 @@ ] }, { - "prefix": "aaindex", - "uri_prefix": "http://www.genome.jp/dbget-bin/www_bget?aaindex:", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/aaindex:", - "http://bioregistry.io/aaindex:", - "https://bio2rdf.org/aaindex:", - "https://bioregistry.io/aaindex:", - "https://www.genome.jp/dbget-bin/www_bget?aaindex:" - ] - }, - { + "pattern": "^\\d{7}$", "prefix": "AAO", "uri_prefix": "http://purl.obolibrary.org/obo/AAO_", "uri_prefix_synonyms": [ @@ -72,119 +64,7 @@ ] }, { - "prefix": "abcd", - "uri_prefix": "https://web.expasy.org/abcd/ABCD_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/abcd:", - "http://web.expasy.org/abcd/", - "http://web.expasy.org/abcd/ABCD_", - "http://web.expasy.org/cgi-bin/abcd/search_abcd.pl?input=", - "https://bioregistry.io/abcd:", - "https://web.expasy.org/abcd/", - "https://web.expasy.org/cgi-bin/abcd/search_abcd.pl?input=" - ] - }, - { - "prefix": "abm", - "uri_prefix": "https://www.abmgood.com/search?query=", - "uri_prefix_synonyms": [ - "http://bioregistry.io/abm:", - "http://www.abmgood.com/catalogsearch/result/?cat=&q=", - "http://www.abmgood.com/search?query=", - "https://bioregistry.io/abm:", - "https://www.abmgood.com/catalogsearch/result/?cat=&q=" - ] - }, - { - "prefix": "abs", - "uri_prefix": "https://identifiers.org/abs:", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/abs:", - "http://bioregistry.io/abs:", - "http://identifiers.org/abs/", - "http://identifiers.org/abs:", - "http://n2t.net/abs:", - "https://bio2rdf.org/abs:", - 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"https://purl.obolibrary.org/obo/AEON_" - ] - }, - { + "pattern": "^\\d{7}$", "prefix": "AERO", "uri_prefix": "http://purl.obolibrary.org/obo/AERO_", "uri_prefix_synonyms": [ @@ -257,74 +131,7 @@ ] }, { - "prefix": "affy.probeset", - "uri_prefix": "https://www.affymetrix.com/LinkServlet?probeset=", - "uri_prefix_synonyms": [ - "http://bioregistry.io/affy.probeset:", - "http://cu.affymetrix.bio2rdf.org/describe/?url=http://bio2rdf.org/affymetrix:", - "http://identifiers.org/affy.probeset/", - "http://identifiers.org/affy.probeset:", - "http://n2t.net/affy.probeset:", - "http://www.affymetrix.com/LinkServlet?probeset=", - "https://bioregistry.io/affy.probeset:", - "https://cu.affymetrix.bio2rdf.org/describe/?url=http://bio2rdf.org/affymetrix:", - "https://identifiers.org/affy.probeset/", - "https://identifiers.org/affy.probeset:", - "https://n2t.net/affy.probeset:" - ] - }, - { - "prefix": "aftol.taxonomy", - "uri_prefix": "http://wasabi.lutzonilab.net/pub/displayTaxonInfo?aftol_id=", - 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"https://alliancegenome.org/gene/", - "https://bioregistry.io/AGR:", - "https://bioregistry.io/AGRICOLA_ID:", - "https://bioregistry.io/agricola:", - "https://ddr.nal.usda.gov/dspace/handle/10113/", - "https://identifiers.org/agricola/", - "https://identifiers.org/agricola:", - "https://n2t.net/agricola:" - ] - }, - { - "prefix": "agrkb", - "uri_prefix": "https://www.alliancegenome.org/accession/", - "uri_prefix_synonyms": [ - "http://bioregistry.io/agrkb:", - "http://www.alliancegenome.org/accession/", - "https://bioregistry.io/agrkb:" - ] - }, - { + "pattern": "^\\d{8}$", "prefix": "AGRO", "uri_prefix": "http://purl.obolibrary.org/obo/AGRO_", "uri_prefix_synonyms": [ @@ -338,37 +145,7 @@ ] }, { - "prefix": "agrovoc", - "uri_prefix": "http://aims.fao.org/aos/agrovoc/", - "uri_prefix_synonyms": [ - "http://aims.fao.org/aos/agrovoc/c_", - "http://bioregistry.io/agrovoc:", - "https://aims.fao.org/aos/agrovoc/", - "https://aims.fao.org/aos/agrovoc/c_", - "https://bioregistry.io/agrovoc:" 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"https://purl.obolibrary.org/obo/COB_", - "https://www.ebi.ac.uk/ols/ontologies/cob/terms?iri=http://purl.obolibrary.org/obo/COB_" + "http://bioregistry.io/cmpo:", + "https://bioregistry.io/cmpo:", + "https://www.ebi.ac.uk/cmpo/CMPO_" ] }, { + "pattern": "^CNP\\d{7}$", "prefix": "coconut", "uri_prefix": "https://coconut.naturalproducts.net/compound/coconut_id/", "uri_prefix_synonyms": [ @@ -3833,6 +8799,7 @@ ] }, { + "pattern": "^COG\\d+$", "prefix": "cog", "prefix_synonyms": [ "COG_Cluster" @@ -3842,12 +8809,16 @@ "http://bio2rdf.org/cog:", "http://bioregistry.io/COG_Cluster:", "http://bioregistry.io/cog:", + "http://identifiers.org/cog/", + "http://identifiers.org/cog:", "http://www.ncbi.nlm.nih.gov/COG/grace/cogenome.cgi?g=", "http://www.ncbi.nlm.nih.gov/COG/new/release/cow.cgi?cog=", "http://www.ncbi.nlm.nih.gov/research/cog/cog/", "https://bio2rdf.org/cog:", "https://bioregistry.io/COG_Cluster:", "https://bioregistry.io/cog:", + "https://identifiers.org/cog/", + "https://identifiers.org/cog:", "https://www.ncbi.nlm.nih.gov/COG/grace/cogenome.cgi?g=", "https://www.ncbi.nlm.nih.gov/COG/new/release/cow.cgi?cog=" ] @@ -3873,6 +8844,7 @@ ] }, { + "pattern": "^[23456789BCDFGHJKLMNPQRSTVWXYZ]{1,6}$", "prefix": "col", "uri_prefix": "https://www.checklistbank.org/dataset/3LR/taxon/", "uri_prefix_synonyms": [ @@ -3888,6 +8860,7 @@ ] }, { + "pattern": "^[1-9]\\d{5}$", "prefix": "col.taiwan", "uri_prefix": "https://taibnet.sinica.edu.tw/eng/taibnet_species_detail.php?name_code=", "uri_prefix_synonyms": [ @@ -3896,19 +8869,6 @@ "https://bioregistry.io/col.taiwan:" ] }, - { - "prefix": "COLAO", - "uri_prefix": "http://purl.obolibrary.org/obo/COLAO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/COLAO:", - "http://bioregistry.io/colao:", - "http://www.ebi.ac.uk/ols/ontologies/colao/terms?iri=http://purl.obolibrary.org/obo/COLAO_", - "https://bioregistry.io/COLAO:", - "https://bioregistry.io/colao:", - "https://purl.obolibrary.org/obo/COLAO_", - "https://www.ebi.ac.uk/ols/ontologies/colao/terms?iri=http://purl.obolibrary.org/obo/COLAO_" - ] - }, { "prefix": "colonatlas", "uri_prefix": "http://www.coloncanceratlas.org/search_cell_line?cell_line=", @@ -3919,6 +8879,7 @@ ] }, { + "pattern": "^\\w+(\\-|\\.|\\w)*$", "prefix": "combine.specifications", "uri_prefix": "https://identifiers.org/combine.specifications:", "uri_prefix_synonyms": [ @@ -3954,6 +8915,7 @@ ] }, { + "pattern": "^CPX-[0-9]+$", "prefix": "complexportal", "prefix_synonyms": [ "ComplexPortal" @@ -3974,6 +8936,7 @@ ] }, { + "pattern": "^DTXSID\\d+$", "prefix": "comptox", "uri_prefix": "https://comptox.epa.gov/dashboard/", "uri_prefix_synonyms": [ @@ -4000,6 +8963,7 @@ ] }, { + "pattern": "^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$", "prefix": "confident.event", "uri_prefix": "https://www.confident-conference.org/index.php/Event:", "uri_prefix_synonyms": [ @@ -4018,6 +8982,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "conoserver", "uri_prefix": "http://www.conoserver.org/?page=card&table=protein&id=", "uri_prefix_synonyms": [ @@ -4033,6 +8998,7 @@ ] }, { + "pattern": "^CONSO\\d{5}$", "prefix": "conso", "uri_prefix": "https://pharmacome.github.io/conso/", "uri_prefix_synonyms": [ @@ -4042,6 +9008,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "cordis.article", "uri_prefix": "https://cordis.europa.eu/article/id/", "uri_prefix_synonyms": [ @@ -4051,6 +9018,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "cordis.project", "uri_prefix": "https://cordis.europa.eu/project/id/", "uri_prefix_synonyms": [ @@ -4060,6 +9028,7 @@ ] }, { + "pattern": "^[A-Z]{2}\\d+$", "prefix": "coriell", "uri_prefix": "http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=", "uri_prefix_synonyms": [ @@ -4077,6 +9046,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "corrdb", "uri_prefix": "https://www.animalgenome.org/CorrDB/q/?id=CorrID:", "uri_prefix_synonyms": [ @@ -4090,6 +9060,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "corum", "uri_prefix": "https://mips.helmholtz-muenchen.de/corum/?id=", "uri_prefix_synonyms": [ @@ -4111,6 +9082,7 @@ ] }, { + "pattern": "^[A-Z0-9]+$", "prefix": "cosmic", "uri_prefix": "http://cancer.sanger.ac.uk/cosmic/gene/overview?ln=", "uri_prefix_synonyms": [ @@ -4130,6 +9102,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "cosmic.cell", "uri_prefix": "https://cancer.sanger.ac.uk/cell_lines/sample/overview?id=", "uri_prefix_synonyms": [ @@ -4139,6 +9112,7 @@ ] }, { + "pattern": "^\\w+_COVID19_[-\\w]+$", "prefix": "covid19", "uri_prefix": "https://covid19.sfb.uit.no/api/records/", "uri_prefix_synonyms": [ @@ -4152,6 +9126,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "covoc", "uri_prefix": "http://purl.obolibrary.org/obo/COVOC_", "uri_prefix_synonyms": [ @@ -4161,6 +9136,7 @@ ] }, { + "pattern": "^([A-H,Y]|[A-H, Y]\\d{2}|[A-H, Y]\\d{2}[A-Z]|[A-H, Y]\\d{2}[A-Z]\\d{1,3}|[A-H, Y]\\d{2}[A-Z]\\d{1,3}(\\/)?\\d{2,})$", "prefix": "cpc", "uri_prefix": "https://worldwide.espacenet.com/classification?locale=en_EP#!/CPC=", "uri_prefix_synonyms": [ @@ -4176,6 +9152,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "cpt", "prefix_synonyms": [ "ama-cpt" @@ -4190,6 +9167,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "crisprdb", "uri_prefix": "http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]=", "uri_prefix_synonyms": [ @@ -4205,19 +9183,7 @@ ] }, { - "prefix": "CRO", - "uri_prefix": "http://purl.obolibrary.org/obo/CRO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/CRO:", - "http://bioregistry.io/cro:", - "http://www.ebi.ac.uk/ols/ontologies/cro/terms?iri=http://purl.obolibrary.org/obo/CRO_", - "https://bioregistry.io/CRO:", - "https://bioregistry.io/cro:", - "https://purl.obolibrary.org/obo/CRO_", - "https://www.ebi.ac.uk/ols/ontologies/cro/terms?iri=http://purl.obolibrary.org/obo/CRO_" - ] - }, - { + "pattern": "^[0-9]{9}$", "prefix": "crop2ml", "uri_prefix": "http://www.crop2ml.org/cropmdb/", "uri_prefix_synonyms": [ @@ -4231,6 +9197,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "cryoem", "uri_prefix": "http://scipion.i2pc.es/ontology/CRYOEM_", "uri_prefix_synonyms": [ @@ -4240,6 +9207,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "cryptodb", "uri_prefix": "https://cryptodb.org/cryptodb/app/record/gene/", "uri_prefix_synonyms": [ @@ -4259,6 +9227,7 @@ ] }, { + "pattern": "^[0-9][A-Za-z0-9]{3}$", "prefix": "csa", "uri_prefix": "https://www.ebi.ac.uk/thornton-srv/databases/CSA/SearchResults.php?PDBID=", "uri_prefix_synonyms": [ @@ -4278,6 +9247,7 @@ ] }, { + "pattern": "^[A-Z]{6}(\\d{2})?$", "prefix": "csd", "uri_prefix": "https://identifiers.org/csd:", "uri_prefix_synonyms": [ @@ -4312,6 +9282,7 @@ ] }, { + "pattern": "^[A-Za-z0-9_-]+$", "prefix": "cst", "uri_prefix": "https://identifiers.org/cst:", "uri_prefix_synonyms": [ @@ -4325,6 +9296,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "cst.ab", "uri_prefix": "https://identifiers.org/cst.ab:", "uri_prefix_synonyms": [ @@ -4340,6 +9312,7 @@ ] }, { + "pattern": "^\\w{5}\\.\\d{2}\\..*$", "prefix": "cstr", "uri_prefix": "https://cstr.cn/", "uri_prefix_synonyms": [ @@ -4353,19 +9326,7 @@ ] }, { - "prefix": "CTENO", - "uri_prefix": "http://purl.obolibrary.org/obo/CTENO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/CTENO:", - "http://bioregistry.io/cteno:", - "http://www.ebi.ac.uk/ols/ontologies/cteno/terms?iri=http://purl.obolibrary.org/obo/CTENO_", - "https://bioregistry.io/CTENO:", - "https://bioregistry.io/cteno:", - "https://purl.obolibrary.org/obo/CTENO_", - "https://www.ebi.ac.uk/ols/ontologies/cteno/terms?iri=http://purl.obolibrary.org/obo/CTENO_" - ] - }, - { + "pattern": "^\\d{4}-\\d+-\\d+-\\d+$", "prefix": "ctis", "uri_prefix": "https://euclinicaltrials.eu/app/#/view/", "uri_prefix_synonyms": [ @@ -4375,19 +9336,7 @@ ] }, { - "prefix": "CTO", - "uri_prefix": "http://purl.obolibrary.org/obo/CTO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/CTO:", - "http://bioregistry.io/cto:", - "http://www.ebi.ac.uk/ols/ontologies/cto/terms?iri=http://purl.obolibrary.org/obo/CTO_", - "https://bioregistry.io/CTO:", - "https://bioregistry.io/cto:", - "https://purl.obolibrary.org/obo/CTO_", - "https://www.ebi.ac.uk/ols/ontologies/cto/terms?iri=http://purl.obolibrary.org/obo/CTO_" - ] - }, - { + "pattern": "^[A-Za-z_0-9]+$", "prefix": "cubedb", "uri_prefix": "https://identifiers.org/cubedb:", "uri_prefix_synonyms": [ @@ -4401,19 +9350,17 @@ ] }, { - "prefix": "CVDO", - "uri_prefix": "http://purl.obolibrary.org/obo/CVDO_", + "pattern": "^\\d+$", + "prefix": "cvx", + "uri_prefix": "https://biopragmatics.github.io/providers/cvx/", "uri_prefix_synonyms": [ - "http://bioregistry.io/CVDO:", - "http://bioregistry.io/cvdo:", - "http://www.ebi.ac.uk/ols/ontologies/cvdo/terms?iri=http://purl.obolibrary.org/obo/CVDO_", - "https://bioregistry.io/CVDO:", - "https://bioregistry.io/cvdo:", - "https://purl.obolibrary.org/obo/CVDO_", - "https://www.ebi.ac.uk/ols/ontologies/cvdo/terms?iri=http://purl.obolibrary.org/obo/CVDO_" + "http://biopragmatics.github.io/providers/cvx/", + "http://bioregistry.io/cvx:", + "https://bioregistry.io/cvx:" ] }, { + "pattern": "^\\S+$", "prefix": "d1id", "uri_prefix": "https://identifiers.org/d1id:", "uri_prefix_synonyms": [ @@ -4427,6 +9374,7 @@ ] }, { + "pattern": "^[A-Za-z0-9-]+$", "prefix": "dailymed", "uri_prefix": "https://dailymed.nlm.nih.gov/dailymed/drugInfo.cfm?setid=", "uri_prefix_synonyms": [ @@ -4446,6 +9394,7 @@ ] }, { + "pattern": "^\\d{6}(\\/\\d+\\.\\d+\\.\\d+)?$", "prefix": "dandi", "uri_prefix": "https://dandiarchive.org/dandiset/", "uri_prefix_synonyms": [ @@ -4459,6 +9408,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "darc", "uri_prefix": "http://darcsite.genzentrum.lmu.de/darc/view.php?id=", "uri_prefix_synonyms": [ @@ -4474,6 +9424,7 @@ ] }, { + "pattern": "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$", "prefix": "dashr", "uri_prefix": "http://lisanwanglab.org/DASHR/entry/", "uri_prefix_synonyms": [ @@ -4489,6 +9440,7 @@ ] }, { + "pattern": "^(hsa-(let|mir)-\\w+(-\\w+)?)|(piR-\\d+)|(chr\\w+.tRNA\\d+-\\w+)|(chr\\w+.tRNA\\d+-\\w+-tRF\\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\\w+)|(HY\\d\\+(-L\\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\\d+)?)$", "prefix": "dashr.expression", "uri_prefix": "https://identifiers.org/dashr.expression:", "uri_prefix_synonyms": [ @@ -4501,17 +9453,6 @@ "https://n2t.net/dashr.expression:" ] }, - { - "prefix": "DataCite", - "uri_prefix": "http://purl.org/spar/datacite/", - "uri_prefix_synonyms": [ - "http://bioregistry.io/DataCite:", - "http://bioregistry.io/datacite:", - "https://bioregistry.io/DataCite:", - "https://bioregistry.io/datacite:", - "https://purl.org/spar/datacite/" - ] - }, { "prefix": "datacommons", "uri_prefix": "https://datacommons.org/browser/", @@ -4522,6 +9463,7 @@ ] }, { + "pattern": "^K[0-9]+$", "prefix": "datanator.gene", "uri_prefix": "https://www.datanator.info/gene/", "uri_prefix_synonyms": [ @@ -4535,6 +9477,7 @@ ] }, { + "pattern": "^[A-Z\\-]+$", "prefix": "datanator.metabolite", "uri_prefix": "https://www.datanator.info/metabolite/", "uri_prefix_synonyms": [ @@ -4548,6 +9491,7 @@ ] }, { + "pattern": "^.*?--%3E.*?$", "prefix": "datanator.reaction", "uri_prefix": "https://datanator.info/reaction/", "uri_prefix_synonyms": [ @@ -4561,6 +9505,7 @@ ] }, { + "pattern": "^AT[1-5]G\\d{5}(\\.\\d+)?$", "prefix": "datf", "uri_prefix": "http://planttfdb.cbi.pku.edu.cn/tf.php?sp=Ath&did=", "uri_prefix_synonyms": [ @@ -4580,6 +9525,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "dbd", "uri_prefix": "https://identifiers.org/dbd:", "uri_prefix_synonyms": [ @@ -4597,6 +9543,7 @@ ] }, { + "pattern": "^([A-Z]+)?\\d+(\\.\\d+)?$", "prefix": "dbest", "prefix_synonyms": [ "bdgp.est" @@ -4629,6 +9576,7 @@ ] }, { + "pattern": "^\\w{1,2}\\.(\\w{1,2}\\.)?[A-Za-z0-9]+$", "prefix": "dbg2introns", "uri_prefix": "http://webapps2.ucalgary.ca/~groupii/cgi-bin/intron.cgi?name=", "uri_prefix_synonyms": [ @@ -4646,6 +9594,7 @@ ] }, { + "pattern": "^phs[0-9]{6}(.v\\d+.p\\d+)?$", "prefix": "dbgap", "uri_prefix": "https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=", "uri_prefix_synonyms": [ @@ -4670,6 +9619,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "dbprobe", "uri_prefix": "https://www.ncbi.nlm.nih.gov/probe/?term=", "uri_prefix_synonyms": [ @@ -4689,6 +9639,7 @@ ] }, { + "pattern": "^rs\\d+$", "prefix": "dbsnp", "prefix_synonyms": [ "snp2tfbs" @@ -4766,17 +9717,6 @@ "https://purl.org/dc/elements/1.1/" ] }, - { - "prefix": "DC_CL", - "uri_prefix": "http://purl.obolibrary.org/obo/DC_CL_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/DC_CL:", - "http://bioregistry.io/dc_cl:", - "https://bioregistry.io/DC_CL:", - "https://bioregistry.io/dc_cl:", - "https://purl.obolibrary.org/obo/DC_CL_" - ] - }, { "prefix": "dcat", "uri_prefix": "http://www.w3.org/ns/dcat#", @@ -4813,21 +9753,7 @@ ] }, { - "prefix": "DDANAT", - "uri_prefix": "http://purl.obolibrary.org/obo/DDANAT_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/ddanat:", - "http://bioregistry.io/DDANAT:", - "http://bioregistry.io/ddanat:", - "http://www.ebi.ac.uk/ols/ontologies/ddanat/terms?iri=http://purl.obolibrary.org/obo/DDANAT_", - "https://bio2rdf.org/ddanat:", - "https://bioregistry.io/DDANAT:", - "https://bioregistry.io/ddanat:", - "https://purl.obolibrary.org/obo/DDANAT_", - "https://www.ebi.ac.uk/ols/ontologies/ddanat/terms?iri=http://purl.obolibrary.org/obo/DDANAT_" - ] - }, - { + "pattern": "^DDInter\\d+$", "prefix": "ddinter.drug", "uri_prefix": "http://ddinter.scbdd.com/ddinter/drug-detail/", "uri_prefix_synonyms": [ @@ -4837,6 +9763,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ddinter.interaction", "uri_prefix": "http://ddinter.scbdd.com/ddinter/interact/", "uri_prefix_synonyms": [ @@ -4846,20 +9773,11 @@ ] }, { - "prefix": "DDPHENO", - "uri_prefix": "http://purl.obolibrary.org/obo/DDPHENO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/DDPHENO:", - "http://bioregistry.io/ddpheno:", - "http://www.ebi.ac.uk/ols/ontologies/ddpheno/terms?iri=http://purl.obolibrary.org/obo/DDPHENO_", - "https://bioregistry.io/DDPHENO:", - "https://bioregistry.io/ddpheno:", - "https://purl.obolibrary.org/obo/DDPHENO_", - "https://www.ebi.ac.uk/ols/ontologies/ddpheno/terms?iri=http://purl.obolibrary.org/obo/DDPHENO_" - ] - }, - { - "prefix": "DeBiO", + "pattern": "^\\d{7}$", + "prefix": "debio", + "prefix_synonyms": [ + "DeBiO" + ], "uri_prefix": "https://biopragmatics.github.io/debio/", "uri_prefix_synonyms": [ "http://biopragmatics.github.io/debio/", @@ -4872,6 +9790,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "decipher", "uri_prefix": "https://www.deciphergenomics.org/syndrome/", "uri_prefix_synonyms": [ @@ -4881,6 +9800,7 @@ ] }, { + "pattern": "^[AMCST][0-9x][0-9]$", "prefix": "degradome", "uri_prefix": "http://degradome.uniovi.es/cgi-bin/protease/", "uri_prefix_synonyms": [ @@ -4896,17 +9816,7 @@ ] }, { - "prefix": "DEO", - "uri_prefix": "http://purl.org/spar/deo/", - "uri_prefix_synonyms": [ - "http://bioregistry.io/DEO:", - "http://bioregistry.io/deo:", - "https://bioregistry.io/DEO:", - "https://bioregistry.io/deo:", - "https://purl.org/spar/deo/" - ] - }, - { + "pattern": "^ACH-\\d+$", "prefix": "depmap", "uri_prefix": "https://depmap.org/portal/cell_line/", "uri_prefix_synonyms": [ @@ -4916,6 +9826,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "dermo", "uri_prefix": "http://purl.obolibrary.org/obo/DERMO_", "uri_prefix_synonyms": [ @@ -4925,6 +9836,7 @@ ] }, { + "pattern": "^[a-zA-Z0-9\\-:#\\.]+$", "prefix": "dev.ga4ghdos", "uri_prefix": "https://dos-gdc.ucsc-cgp-dev.org/ga4gh/dos/v1/dataobjects/", "uri_prefix_synonyms": [ @@ -4940,6 +9852,7 @@ ] }, { + "pattern": "^[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", "prefix": "dg.4503", "uri_prefix": "https://gen3.biodatacatalyst.nhlbi.nih.gov/ga4gh/drs/v1/objects/", "uri_prefix_synonyms": [ @@ -4953,6 +9866,7 @@ ] }, { + "pattern": "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", "prefix": "dg.4dfc", "uri_prefix": "https://nci-crdc.datacommons.io/ga4gh/drs/v1/objects/", "uri_prefix_synonyms": [ @@ -4966,6 +9880,7 @@ ] }, { + "pattern": "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", "prefix": "dg.6vts", "uri_prefix": "https://jcoin.datacommons.io/ga4gh/drs/v1/objects/", "uri_prefix_synonyms": [ @@ -4979,6 +9894,7 @@ ] }, { + "pattern": "^[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}$", "prefix": "dg.anv0", "uri_prefix": "https://gen3.theanvil.io/ga4gh/drs/v1/objects/", "uri_prefix_synonyms": [ @@ -4992,6 +9908,7 @@ ] }, { + "pattern": "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", "prefix": "dg.f82a1a", "uri_prefix": "https://data.kidsfirstdrc.org/ga4gh/drs/v1/objects/", "uri_prefix_synonyms": [ @@ -5005,6 +9922,7 @@ ] }, { + "pattern": "^[0-9a-fA-F]{8}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{4}\\-[0-9a-fA-F]{12}$", "prefix": "dg5b0d", "uri_prefix": "https://data.bloodpac.org/ga4gh/drs/v1/objects/", "uri_prefix_synonyms": [ @@ -5018,6 +9936,19 @@ ] }, { + "pattern": "^\\d+$", + "prefix": "dggr", + "uri_prefix": "https://kyotofly.kit.jp/cgi-bin/stocks/search_res_det.cgi?DB_NUM=1&DG_NUM=", + "uri_prefix_synonyms": [ + "http://bioregistry.io/dggr:", + "http://kyotofly.kit.jp/cgi-bin/stocks/search_res_det.cgi?DB_NUM=1&DG_NUM=", + "http://scicrunch.org/resolver/RRID:DGGR_", + "https://bioregistry.io/dggr:", + "https://scicrunch.org/resolver/RRID:DGGR_" + ] + }, + { + "pattern": "^\\d+$", "prefix": "dgrc", "uri_prefix": "https://dgrc.bio.indiana.edu/product/View?product=", "uri_prefix_synonyms": [ @@ -5027,17 +9958,7 @@ ] }, { - "prefix": "DHBA", - "uri_prefix": "https://biopragmatics.github.io/providers/dhba/", - "uri_prefix_synonyms": [ - "http://biopragmatics.github.io/providers/dhba/", - "http://bioregistry.io/DHBA:", - "http://bioregistry.io/dhba:", - "https://bioregistry.io/DHBA:", - "https://bioregistry.io/dhba:" - ] - }, - { + "pattern": "^\\d+$", "prefix": "dicom", "uri_prefix": "http://dicom.nema.org/resources/ontology/DCM/", "uri_prefix_synonyms": [ @@ -5074,6 +9995,7 @@ ] }, { + "pattern": "^DDB\\d+$", "prefix": "dictybase.est", "uri_prefix": "http://dictybase.org/db/cgi-bin/feature_page.pl?primary_id=", "uri_prefix_synonyms": [ @@ -5089,6 +10011,7 @@ ] }, { + "pattern": "^[a-z0-9]+:[A-Za-z0-9.\\-:]+$", "prefix": "did", "uri_prefix": "https://uniresolver.io/#did:", "uri_prefix_synonyms": [ @@ -5106,30 +10029,7 @@ ] }, { - "prefix": "DIDEO", - "uri_prefix": "http://purl.obolibrary.org/obo/DIDEO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/DIDEO:", - "http://bioregistry.io/dideo:", - "http://www.ebi.ac.uk/ols/ontologies/dideo/terms?iri=http://purl.obolibrary.org/obo/DIDEO_", - "https://bioregistry.io/DIDEO:", - "https://bioregistry.io/dideo:", - "https://purl.obolibrary.org/obo/DIDEO_", - "https://www.ebi.ac.uk/ols/ontologies/dideo/terms?iri=http://purl.obolibrary.org/obo/DIDEO_" - ] - }, - { - "prefix": "DINTO", - "uri_prefix": "http://purl.obolibrary.org/obo/DINTO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/DINTO:", - "http://bioregistry.io/dinto:", - "https://bioregistry.io/DINTO:", - "https://bioregistry.io/dinto:", - "https://purl.obolibrary.org/obo/DINTO_" - ] - }, - { + "pattern": "^DIP(\\:)?\\-\\d{1,}[ENXS]$", "prefix": "dip", "uri_prefix": "https://dip.doe-mbi.ucla.edu/dip/DIPview.cgi?ID=", "uri_prefix_synonyms": [ @@ -5149,19 +10049,7 @@ ] }, { - "prefix": "DISDRIV", - "uri_prefix": "http://purl.obolibrary.org/obo/DISDRIV_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/DISDRIV:", - "http://bioregistry.io/disdriv:", - "http://www.ebi.ac.uk/ols/ontologies/disdriv/terms?iri=http://purl.obolibrary.org/obo/DISDRIV_", - "https://bioregistry.io/DISDRIV:", - "https://bioregistry.io/disdriv:", - "https://purl.obolibrary.org/obo/DISDRIV_", - "https://www.ebi.ac.uk/ols/ontologies/disdriv/terms?iri=http://purl.obolibrary.org/obo/DISDRIV_" - ] - }, - { + "pattern": "^\\d{7}$", "prefix": "diseaseclass", "uri_prefix": "https://biopragmatics.github.io/providers/diseaseclass/", "uri_prefix_synonyms": [ @@ -5171,6 +10059,7 @@ ] }, { + "pattern": "^DP\\d{5}$", "prefix": "disprot", "prefix_synonyms": [ "disprot.region" @@ -5201,6 +10090,7 @@ ] }, { + "pattern": "^[A-Z0-9]{6,7}$", "prefix": "dlxb", "uri_prefix": "https://doulix.com/biomodules/", "uri_prefix_synonyms": [ @@ -5214,6 +10104,7 @@ ] }, { + "pattern": "^[A-Z0-9]{6,7}$", "prefix": "dlxc", "uri_prefix": "https://doulix.com/constructs/", "uri_prefix_synonyms": [ @@ -5226,17 +10117,6 @@ "https://identifiers.org/dlxc:" ] }, - { - "prefix": "DMBA", - "uri_prefix": "https://biopragmatics.github.io/providers/dmba/", - "uri_prefix_synonyms": [ - "http://biopragmatics.github.io/providers/dmba/", - "http://bioregistry.io/DMBA:", - "http://bioregistry.io/dmba:", - "https://bioregistry.io/DMBA:", - "https://bioregistry.io/dmba:" - ] - }, { "prefix": "doap", "uri_prefix": "http://usefulinc.com/ns/doap#", @@ -5247,17 +10127,7 @@ ] }, { - "prefix": "DoCO", - "uri_prefix": "http://purl.org/spar/doco/", - "uri_prefix_synonyms": [ - "http://bioregistry.io/DoCO:", - "http://bioregistry.io/doco:", - "https://bioregistry.io/DoCO:", - "https://bioregistry.io/doco:", - "https://purl.org/spar/doco/" - ] - }, - { + "pattern": "^10.\\d{2,9}/.*$", "prefix": "doi", "uri_prefix": "http://dx.doi.org/", "uri_prefix_synonyms": [ @@ -5283,44 +10153,7 @@ ] }, { - "prefix": "DOID", - "prefix_synonyms": [ - "do" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/DOID_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/do:", - "http://bioregistry.io/DOID:", - "http://bioregistry.io/do:", - "http://bioregistry.io/doid:", - "http://disease-ontology.org/term/", - "http://disease-ontology.org/term/DOID:", - "http://identifiers.org/DOID/", - "http://identifiers.org/DOID:", - "http://identifiers.org/doid/DOID:", - "http://n2t.net/doid:", - "http://purl.org/obo/owl/DOID#DOID_", - "http://www.disease-ontology.org/?id=", - "http://www.ebi.ac.uk/ols/ontologies/doid/terms?iri=http://purl.obolibrary.org/obo/DOID_", - "http://www.ebi.ac.uk/ols4/ontologies/doid/terms?obo_id=DOID:", - "https://bio2rdf.org/do:", - "https://bioregistry.io/DOID:", - "https://bioregistry.io/do:", - "https://bioregistry.io/doid:", - "https://disease-ontology.org/term/", - "https://disease-ontology.org/term/DOID:", - "https://identifiers.org/DOID/", - "https://identifiers.org/DOID:", - "https://identifiers.org/doid/DOID:", - "https://n2t.net/doid:", - "https://purl.obolibrary.org/obo/DOID_", - "https://purl.org/obo/owl/DOID#DOID_", - "https://www.disease-ontology.org/?id=", - "https://www.ebi.ac.uk/ols/ontologies/doid/terms?iri=http://purl.obolibrary.org/obo/DOID_", - "https://www.ebi.ac.uk/ols4/ontologies/doid/terms?obo_id=DOID:" - ] - }, - { + "pattern": "^[0-9][A-Za-z0-9]{3}$", "prefix": "dommino", "uri_prefix": "http://orion.rnet.missouri.edu/~nz953/DOMMINO/index.php/result/show_network/", "uri_prefix_synonyms": [ @@ -5336,6 +10169,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "door", "uri_prefix": "http://csbl.bmb.uga.edu/DOOR/operon.php?id=", "uri_prefix_synonyms": [ @@ -5355,6 +10189,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "doqcs.model", "uri_prefix": "http://doqcs.ncbs.res.in/template.php?&y=accessiondetails&an=", "uri_prefix_synonyms": [ @@ -5372,6 +10207,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "doqcs.pathway", "uri_prefix": "http://doqcs.ncbs.res.in/template.php?&y=pathwaydetails&pn=", "uri_prefix_synonyms": [ @@ -5389,19 +10225,7 @@ ] }, { - "prefix": "FBcv", - "uri_prefix": "http://purl.obolibrary.org/obo/FBcv_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/DPO:", - "http://bioregistry.io/dpo:", - "http://www.ebi.ac.uk/ols/ontologies/dpo/terms?iri=http://purl.obolibrary.org/obo/FBcv_", - "https://bioregistry.io/DPO:", - "https://bioregistry.io/dpo:", - "https://purl.obolibrary.org/obo/FBcv_", - "https://www.ebi.ac.uk/ols/ontologies/dpo/terms?iri=http://purl.obolibrary.org/obo/FBcv_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "dpv", "uri_prefix": "http://www.dpvweb.net/dpv/showdpv.php?dpvno=", "uri_prefix_synonyms": [ @@ -5419,6 +10243,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "dragondb.allele", "uri_prefix": "https://identifiers.org/dragondb.allele:", "uri_prefix_synonyms": [ @@ -5432,6 +10257,7 @@ ] }, { + "pattern": "^\\d\\w+$", "prefix": "dragondb.dna", "uri_prefix": "https://identifiers.org/dragondb.dna:", "uri_prefix_synonyms": [ @@ -5445,6 +10271,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "dragondb.locus", "uri_prefix": "https://identifiers.org/dragondb.locus:", "uri_prefix_synonyms": [ @@ -5458,6 +10285,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "dragondb.protein", "uri_prefix": "https://identifiers.org/dragondb.protein:", "uri_prefix_synonyms": [ @@ -5480,6 +10308,7 @@ ] }, { + "pattern": "^DRKS\\d+$", "prefix": "drks", "uri_prefix": "https://drks.de/search/en/trial/", "uri_prefix_synonyms": [ @@ -5493,19 +10322,7 @@ ] }, { - "prefix": "DRON", - "uri_prefix": "http://purl.obolibrary.org/obo/DRON_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/DRON:", - "http://bioregistry.io/dron:", - "http://www.ebi.ac.uk/ols/ontologies/dron/terms?iri=http://purl.obolibrary.org/obo/DRON_", - "https://bioregistry.io/DRON:", - "https://bioregistry.io/dron:", - "https://purl.obolibrary.org/obo/DRON_", - "https://www.ebi.ac.uk/ols/ontologies/dron/terms?iri=http://purl.obolibrary.org/obo/DRON_" - ] - }, - { + "pattern": "^v2_[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}$", "prefix": "drsanv0", "uri_prefix": "https://data.terra.bio/ga4gh/drs/v1/objects/", "uri_prefix_synonyms": [ @@ -5519,6 +10336,7 @@ ] }, { + "pattern": "^DRSC\\d+$", "prefix": "drsc", "uri_prefix": "http://www.flyrnai.org/cgi-bin/RNAi_gene_lookup_public.pl?gname=", "uri_prefix_synonyms": [ @@ -5534,6 +10352,7 @@ ] }, { + "pattern": "^DB\\d{5}$", "prefix": "drugbank", "prefix_synonyms": [ "DRUGBANK_ID", @@ -5563,6 +10382,33 @@ ] }, { + "pattern": "^BE\\d{7}$", + "prefix": "drugbank.bioentity", + "prefix_synonyms": [ + "drugbank.target", + "drugbankv4.target" + ], + "uri_prefix": "https://go.drugbank.com/bio_entities/", + "uri_prefix_synonyms": [ + "http://bioregistry.io/drugbank.bioentity:", + "http://bioregistry.io/drugbank.target:", + "http://bioregistry.io/drugbankv4.target:", + "http://go.drugbank.com/bio_entities/", + "http://identifiers.org/drugbankv4.target/", + "http://identifiers.org/drugbankv4.target:", + "http://n2t.net/drugbankv4.target:", + "http://www.drugbank.ca/biodb/bio_entities/", + "https://bioregistry.io/drugbank.bioentity:", + "https://bioregistry.io/drugbank.target:", + "https://bioregistry.io/drugbankv4.target:", + "https://identifiers.org/drugbankv4.target/", + "https://identifiers.org/drugbankv4.target:", + "https://n2t.net/drugbankv4.target:", + "https://www.drugbank.ca/biodb/bio_entities/" + ] + }, + { + "pattern": "^DBCAT\\d+$", "prefix": "drugbank.category", "uri_prefix": "https://www.drugbank.ca/categories/", "uri_prefix_synonyms": [ @@ -5572,35 +10418,47 @@ ] }, { - "prefix": "drugbank.salt", - "prefix_synonyms": [ - "drugbank.target" - ], - "uri_prefix": "https://go.drugbank.com/salts/", + "pattern": "^DBCOND\\d+$", + "prefix": "drugbank.condition", + "uri_prefix": "https://go.drugbank.com/indications/", "uri_prefix_synonyms": [ - "http://bioregistry.io/drugbank.salt:", - "http://bioregistry.io/drugbank.target:", - "http://go.drugbank.com/salts/", - "https://bioregistry.io/drugbank.salt:", - "https://bioregistry.io/drugbank.target:" + "http://bioregistry.io/drugbank.condition:", + "http://go.drugbank.com/indications/", + "https://bioregistry.io/drugbank.condition:" ] }, { - "prefix": "drugbankv4.target", - "uri_prefix": "http://www.drugbank.ca/biodb/bio_entities/", + "pattern": "^DBMET\\d+$", + "prefix": "drugbank.metabolite", + "uri_prefix": "https://go.drugbank.com/metabolites/", "uri_prefix_synonyms": [ - "http://bioregistry.io/drugbankv4.target:", - "http://identifiers.org/drugbankv4.target/", - "http://identifiers.org/drugbankv4.target:", - "http://n2t.net/drugbankv4.target:", - "https://bioregistry.io/drugbankv4.target:", - "https://identifiers.org/drugbankv4.target/", - "https://identifiers.org/drugbankv4.target:", - "https://n2t.net/drugbankv4.target:", - "https://www.drugbank.ca/biodb/bio_entities/" + "http://bioregistry.io/drugbank.metabolite:", + "http://go.drugbank.com/metabolites/", + "https://bioregistry.io/drugbank.metabolite:" + ] + }, + { + "pattern": "^\\d+$", + "prefix": "drugbank.reaction", + "uri_prefix": "https://go.drugbank.com/reactions/", + "uri_prefix_synonyms": [ + "http://bioregistry.io/drugbank.reaction:", + "http://go.drugbank.com/reactions/", + "https://bioregistry.io/drugbank.reaction:" + ] + }, + { + "pattern": "^DBSALT\\d{6}$", + "prefix": "drugbank.salt", + "uri_prefix": "https://go.drugbank.com/salts/", + "uri_prefix_synonyms": [ + "http://bioregistry.io/drugbank.salt:", + "http://go.drugbank.com/salts/", + "https://bioregistry.io/drugbank.salt:" ] }, { + "pattern": "^\\d+$", "prefix": "drugcentral", "prefix_synonyms": [ "Drug_Central" @@ -5621,6 +10479,7 @@ ] }, { + "pattern": "^(ACC|DSM|NC|PC|RT|AS|PV)-\\d+$", "prefix": "dsmz", "prefix_synonyms": [ "DSMZCellDive" @@ -5629,9 +10488,11 @@ "uri_prefix_synonyms": [ "http://bioregistry.io/DSMZCellDive:", "http://bioregistry.io/dsmz:", + "http://celldive.dsmz.de/cellline/", "http://www.dsmz.de/collection/catalogue/details/culture/", "https://bioregistry.io/DSMZCellDive:", - "https://bioregistry.io/dsmz:" + "https://bioregistry.io/dsmz:", + "https://celldive.dsmz.de/cellline/" ] }, { @@ -5644,6 +10505,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "dto", "uri_prefix": "http://www.drugtargetontology.org/dto/DTO_", "uri_prefix_synonyms": [ @@ -5652,19 +10514,6 @@ "https://www.drugtargetontology.org/dto/DTO_" ] }, - { - "prefix": "DUO", - "uri_prefix": "http://purl.obolibrary.org/obo/DUO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/DUO:", - "http://bioregistry.io/duo:", - "http://www.ebi.ac.uk/ols/ontologies/duo/terms?iri=http://purl.obolibrary.org/obo/DUO_", - "https://bioregistry.io/DUO:", - "https://bioregistry.io/duo:", - "https://purl.obolibrary.org/obo/DUO_", - "https://www.ebi.ac.uk/ols/ontologies/duo/terms?iri=http://purl.obolibrary.org/obo/DUO_" - ] - }, { "prefix": "eaglei", "uri_prefix": "http://hawaii.eagle-i.net/i/", @@ -5684,6 +10533,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "easychair.topic", "uri_prefix": "https://easychair.org/cfp/topic.cgi?tid=", "uri_prefix_synonyms": [ @@ -5693,6 +10543,7 @@ ] }, { + "pattern": "^E(S|D)i\\d+-\\w$", "prefix": "ebisc", "uri_prefix": "https://cells.ebisc.org/", "uri_prefix_synonyms": [ @@ -5702,6 +10553,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ecacc", "uri_prefix": "https://www.phe-culturecollections.org.uk/products/celllines/generalcell/detail.jsp?collection=ecacc_gc&refId=", "uri_prefix_synonyms": [ @@ -5711,19 +10563,7 @@ ] }, { - "prefix": "ECAO", - "uri_prefix": "http://purl.obolibrary.org/obo/ECAO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ECAO:", - "http://bioregistry.io/ecao:", - "http://www.ebi.ac.uk/ols/ontologies/ecao/terms?iri=http://purl.obolibrary.org/obo/ECAO_", - "https://bioregistry.io/ECAO:", - "https://bioregistry.io/ecao:", - "https://purl.obolibrary.org/obo/ECAO_", - "https://www.ebi.ac.uk/ols/ontologies/ecao/terms?iri=http://purl.obolibrary.org/obo/ECAO_" - ] - }, - { + "pattern": "^\\d{1,2}(((\\.\\d{1,3}){1,3})|(\\.\\d+){2}\\.n\\d{1,3})?$", "prefix": "eccode", "prefix_synonyms": [ "EC", @@ -5807,6 +10647,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ecg", "prefix_synonyms": [ "ECGOntology" @@ -5821,6 +10662,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "echinobase", "uri_prefix": "https://www.echinobase.org/entry/gene/showgene.do?method=display&geneId=", "uri_prefix_synonyms": [ @@ -5830,6 +10672,7 @@ ] }, { + "pattern": "^EB\\d+$", "prefix": "echobase", "uri_prefix": "http://www.york.ac.uk/res/thomas/Gene.cfm?recordID=", "uri_prefix_synonyms": [ @@ -5849,6 +10692,7 @@ ] }, { + "pattern": "^ECMDB\\d+$", "prefix": "ecmdb", "prefix_synonyms": [ "ECMDB" @@ -5862,46 +10706,6 @@ "https://ecmdb.ca/compounds/" ] }, - { - "prefix": "ECO", - "uri_prefix": "http://purl.obolibrary.org/obo/ECO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/eco:", - "http://bioregistry.io/ECO:", - "http://bioregistry.io/eco:", - "http://identifiers.org/ECO/", - "http://identifiers.org/ECO:", - "http://identifiers.org/eco/ECO:", - "http://n2t.net/eco:", - "http://purl.bioontology.org/ontology/ECO/ECO:", - "http://www.ebi.ac.uk/ols/ontologies/eco/terms?iri=http://purl.obolibrary.org/obo/ECO_", - "http://www.evidenceontology.org/browse/#ECO_", - "https://bio2rdf.org/eco:", - "https://bioregistry.io/ECO:", - "https://bioregistry.io/eco:", - "https://identifiers.org/ECO/", - "https://identifiers.org/ECO:", - "https://identifiers.org/eco/ECO:", - "https://n2t.net/eco:", - "https://purl.bioontology.org/ontology/ECO/ECO:", - "https://purl.obolibrary.org/obo/ECO_", - "https://www.ebi.ac.uk/ols/ontologies/eco/terms?iri=http://purl.obolibrary.org/obo/ECO_", - "https://www.evidenceontology.org/browse/#ECO_" - ] - }, - { - "prefix": "ECOCORE", - "uri_prefix": "http://purl.obolibrary.org/obo/ECOCORE_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ECOCORE:", - "http://bioregistry.io/ecocore:", - "http://www.ebi.ac.uk/ols/ontologies/ecocore/terms?iri=http://purl.obolibrary.org/obo/ECOCORE_", - "https://bioregistry.io/ECOCORE:", - "https://bioregistry.io/ecocore:", - "https://purl.obolibrary.org/obo/ECOCORE_", - "https://www.ebi.ac.uk/ols/ontologies/ecocore/terms?iri=http://purl.obolibrary.org/obo/ECOCORE_" - ] - }, { "prefix": "ecocyc", "uri_prefix": "https://ecocyc.org/gene?id=", @@ -5914,6 +10718,7 @@ ] }, { + "pattern": "^EG\\d+$", "prefix": "ecogene", "uri_prefix": "http://www.ecogene.org/gene/", "uri_prefix_synonyms": [ @@ -5935,6 +10740,7 @@ ] }, { + "pattern": "^[A-Za-z0-9-]+$", "prefix": "ecoliwiki", "uri_prefix": "https://identifiers.org/ecoliwiki:", "uri_prefix_synonyms": [ @@ -5948,6 +10754,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ecso", "uri_prefix": "http://purl.dataone.org/odo/ECSO_", "uri_prefix_synonyms": [ @@ -5957,19 +10764,7 @@ ] }, { - "prefix": "ECTO", - "uri_prefix": "http://purl.obolibrary.org/obo/ECTO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ECTO:", - "http://bioregistry.io/ecto:", - "http://www.ebi.ac.uk/ols/ontologies/ecto/terms?iri=http://purl.obolibrary.org/obo/ECTO_", - "https://bioregistry.io/ECTO:", - "https://bioregistry.io/ecto:", - "https://purl.obolibrary.org/obo/ECTO_", - "https://www.ebi.ac.uk/ols/ontologies/ecto/terms?iri=http://purl.obolibrary.org/obo/ECTO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "ecyano.entity", "uri_prefix": "https://www.e-cyanobacterium.org/bcs/entity/", "uri_prefix_synonyms": [ @@ -5985,6 +10780,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ecyano.experiment", "uri_prefix": "https://www.e-cyanobacterium.org/experiments-repository/?action=detail&id=", "uri_prefix_synonyms": [ @@ -5998,6 +10794,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ecyano.model", "uri_prefix": "https://e-cyanobacterium.org/models/model/", "uri_prefix_synonyms": [ @@ -6013,6 +10810,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ecyano.rule", "uri_prefix": "https://e-cyanobacterium.org/bcs/rule/", "uri_prefix_synonyms": [ @@ -6028,8 +10826,9 @@ ] }, { + "pattern": "^(data|topic|operation|format)\\_\\d{4}$", "prefix": "edam", - "uri_prefix": "https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http://edamontology.org/", + "uri_prefix": "http://edamontology.org/", "uri_prefix_synonyms": [ "http://bio2rdf.org/edam:", "http://bioregistry.io/edam:", @@ -6040,13 +10839,16 @@ "http://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http://edamontology.org/", "https://bio2rdf.org/edam:", "https://bioregistry.io/edam:", + "https://edamontology.org/", "https://identifiers.org/edam/", "https://identifiers.org/edam:", "https://n2t.net/edam:", - "https://purl.bioontology.org/ontology/EDAM/" + "https://purl.bioontology.org/ontology/EDAM/", + "https://www.ebi.ac.uk/ols/ontologies/edam/terms?iri=http://edamontology.org/" ] }, { + "pattern": "^\\d+$", "prefix": "edam.data", "uri_prefix": "http://edamontology.org/data_", "uri_prefix_synonyms": [ @@ -6056,6 +10858,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "edam.format", "uri_prefix": "http://edamontology.org/format_", "uri_prefix_synonyms": [ @@ -6065,6 +10868,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "edam.operation", "uri_prefix": "http://edamontology.org/operation_", "uri_prefix_synonyms": [ @@ -6074,6 +10878,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "edam.topic", "uri_prefix": "http://edamontology.org/topic_", "uri_prefix_synonyms": [ @@ -6092,27 +10897,7 @@ ] }, { - "prefix": "EFO", - "uri_prefix": "http://www.ebi.ac.uk/efo/EFO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/EFO:", - "http://bioregistry.io/efo:", - "http://identifiers.org/efo/", - "http://identifiers.org/efo:", - "http://n2t.net/efo:", - "http://purl.bioontology.org/ontology/EFO/efo:EFO_", - "http://www.ebi.ac.uk/efo/", - "https://bioregistry.io/EFO:", - "https://bioregistry.io/efo:", - "https://identifiers.org/efo/", - "https://identifiers.org/efo:", - "https://n2t.net/efo:", - "https://purl.bioontology.org/ontology/EFO/efo:EFO_", - "https://www.ebi.ac.uk/efo/", - "https://www.ebi.ac.uk/efo/EFO_" - ] - }, - { + "pattern": "^EGAD\\d{11}$", "prefix": "ega.dataset", "uri_prefix": "https://www.ebi.ac.uk/ega/datasets/", "uri_prefix_synonyms": [ @@ -6130,6 +10915,7 @@ ] }, { + "pattern": "^EGAS\\d{11}$", "prefix": "ega.study", "uri_prefix": "https://www.ebi.ac.uk/ega/studies/", "uri_prefix_synonyms": [ @@ -6140,139 +10926,46 @@ "http://www.ebi.ac.uk/ega/studies/", "https://bioregistry.io/ega.study:", "https://identifiers.org/ega.study/", - "https://identifiers.org/ega.study:", - "https://n2t.net/ega.study:" - ] - }, - { - "prefix": "eggnog", - "uri_prefix": "http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0=", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/eggnog:", - "http://bioregistry.io/eggnog:", - "http://identifiers.org/eggnog/", - "http://identifiers.org/eggnog:", - "http://n2t.net/eggnog:", - "https://bio2rdf.org/eggnog:", - "https://bioregistry.io/eggnog:", - "https://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0=", - "https://identifiers.org/eggnog/", - "https://identifiers.org/eggnog:", - "https://n2t.net/eggnog:" - ] - }, - { - "prefix": "EHDA", - "uri_prefix": "http://purl.obolibrary.org/obo/EHDA_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/ehda:", - "http://bioregistry.io/EHDA:", - "http://bioregistry.io/ehda:", - "https://bio2rdf.org/ehda:", - "https://bioregistry.io/EHDA:", - "https://bioregistry.io/ehda:", - "https://purl.obolibrary.org/obo/EHDA_" - ] - }, - { - "prefix": "EHDAA", - "uri_prefix": "http://purl.obolibrary.org/obo/EHDAA_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/ehdaa:", - "http://bioregistry.io/EHDAA:", - "http://bioregistry.io/ehdaa:", - "https://bio2rdf.org/ehdaa:", - "https://bioregistry.io/EHDAA:", - "https://bioregistry.io/ehdaa:", - "https://purl.obolibrary.org/obo/EHDAA_" - ] - }, - { - "prefix": "EHDAA2", - "prefix_synonyms": [ - "EHDAA2_RETIRED", - "HDAA2", - "RETIRED_EHDAA2" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/EHDAA2_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/EHDAA2:", - "http://bioregistry.io/EHDAA2_RETIRED:", - "http://bioregistry.io/HDAA2:", - "http://bioregistry.io/RETIRED_EHDAA2:", - "http://bioregistry.io/ehdaa2:", - "http://www.ebi.ac.uk/ols/ontologies/ehdaa2/terms?iri=http://purl.obolibrary.org/obo/EHDAA2_", - "https://bioregistry.io/EHDAA2:", - "https://bioregistry.io/EHDAA2_RETIRED:", - "https://bioregistry.io/HDAA2:", - "https://bioregistry.io/RETIRED_EHDAA2:", - "https://bioregistry.io/ehdaa2:", - "https://purl.obolibrary.org/obo/EHDAA2_", - "https://www.ebi.ac.uk/ols/ontologies/ehdaa2/terms?iri=http://purl.obolibrary.org/obo/EHDAA2_" - ] - }, - { - "prefix": "elm", - "uri_prefix": "https://identifiers.org/elm:", - "uri_prefix_synonyms": [ - "http://bioregistry.io/elm:", - "http://elm.eu.org/instances.html?q=", - "http://identifiers.org/elm/", - "http://identifiers.org/elm:", - "http://n2t.net/elm:", - "https://bioregistry.io/elm:", - "https://elm.eu.org/instances.html?q=", - "https://identifiers.org/elm/", - "https://n2t.net/elm:" - ] - }, - { - "prefix": "EMAP", - "uri_prefix": "http://purl.obolibrary.org/obo/EMAP_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/emap.ontology:", - "http://bioregistry.io/EMAP:", - "http://bioregistry.io/emap:", - "http://www.ebi.ac.uk/ols/ontologies/emap/terms?iri=http://purl.obolibrary.org/obo/EMAP_", - "https://bio2rdf.org/emap.ontology:", - "https://bioregistry.io/EMAP:", - "https://bioregistry.io/emap:", - "https://purl.obolibrary.org/obo/EMAP_", - "https://www.ebi.ac.uk/ols/ontologies/emap/terms?iri=http://purl.obolibrary.org/obo/EMAP_" - ] - }, - { - "prefix": "EMAPA", - "prefix_synonyms": [ - "EMAPA_RETIRED" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/EMAPA_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/EMAPA:", - "http://bioregistry.io/EMAPA_RETIRED:", - "http://bioregistry.io/emapa:", - "http://www.ebi.ac.uk/ols/ontologies/emapa/terms?iri=http://purl.obolibrary.org/obo/EMAPA_", - "http://www.informatics.jax.org/vocab/gxd/anatomy/EMAPA:", - "https://bioregistry.io/EMAPA:", - "https://bioregistry.io/EMAPA_RETIRED:", - "https://bioregistry.io/emapa:", - "https://purl.obolibrary.org/obo/EMAPA_", - "https://www.ebi.ac.uk/ols/ontologies/emapa/terms?iri=http://purl.obolibrary.org/obo/EMAPA_", - "https://www.informatics.jax.org/vocab/gxd/anatomy/EMAPA:" + "https://identifiers.org/ega.study:", + "https://n2t.net/ega.study:" ] }, { - "prefix": "EMAPS", - "uri_prefix": "https://www.informatics.jax.org/vocab/gxd/anatomy/EMAPS:", + "pattern": "^\\w+$", + "prefix": "eggnog", + "uri_prefix": "http://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0=", "uri_prefix_synonyms": [ - "http://bioregistry.io/EMAPS:", - "http://bioregistry.io/emaps:", - "http://www.informatics.jax.org/vocab/gxd/anatomy/EMAPS:", - "https://bioregistry.io/EMAPS:", - "https://bioregistry.io/emaps:" + "http://bio2rdf.org/eggnog:", + "http://bioregistry.io/eggnog:", + "http://identifiers.org/eggnog/", + "http://identifiers.org/eggnog:", + "http://n2t.net/eggnog:", + "https://bio2rdf.org/eggnog:", + "https://bioregistry.io/eggnog:", + "https://eggnog.embl.de/version_3.0/cgi/search.py?search_term_0=", + "https://identifiers.org/eggnog/", + "https://identifiers.org/eggnog:", + "https://n2t.net/eggnog:" + ] + }, + { + "pattern": "^[A-Za-z_0-9]+$", + "prefix": "elm", + "uri_prefix": "https://identifiers.org/elm:", + "uri_prefix_synonyms": [ + "http://bioregistry.io/elm:", + "http://elm.eu.org/instances.html?q=", + "http://identifiers.org/elm/", + "http://identifiers.org/elm:", + "http://n2t.net/elm:", + "https://bioregistry.io/elm:", + "https://elm.eu.org/instances.html?q=", + "https://identifiers.org/elm/", + "https://n2t.net/elm:" ] }, { + "pattern": "^EMD-\\d{4,5}$", "prefix": "emdb", "uri_prefix": "https://www.ebi.ac.uk/pdbe/entry/emdb/", "uri_prefix_synonyms": [ @@ -6306,6 +10999,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "emolecules", "uri_prefix": "https://reaxys.emolecules.com/cgi-bin/more?vid=", "uri_prefix_synonyms": [ @@ -6315,6 +11009,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "empiar", "uri_prefix": "https://www.ebi.ac.uk/pdbe/emdb/empiar/entry/", "uri_prefix_synonyms": [ @@ -6332,6 +11027,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "emsl.project", "uri_prefix": "https://www.emsl.pnnl.gov/project/", "uri_prefix_synonyms": [ @@ -6341,46 +11037,7 @@ ] }, { - "prefix": "ena.embl", - "prefix_synonyms": [ - "bioproject", - "ena", - "insdc.run" - ], - "uri_prefix": "https://www.ebi.ac.uk/ena/browser/view/", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/ena:", - "http://bioregistry.io/bioproject:", - "http://bioregistry.io/ena.embl:", - "http://bioregistry.io/ena:", - "http://bioregistry.io/insdc.run:", - "http://identifiers.org/bioproject/", - "http://identifiers.org/bioproject:", - "http://identifiers.org/ena.embl/", - "http://identifiers.org/ena.embl:", - "http://n2t.net/bioproject:", - "http://n2t.net/ena.embl:", - "http://trace.ddbj.nig.ac.jp/BPSearch/bioproject?acc=", - "http://www.ebi.ac.uk/ena/browser/view/", - "http://www.ncbi.nlm.nih.gov/bioproject/?term=", - "http://www.ncbi.nlm.nih.gov/bioproject?term=", - "https://bio2rdf.org/ena:", - "https://bioregistry.io/bioproject:", - "https://bioregistry.io/ena.embl:", - "https://bioregistry.io/ena:", - "https://bioregistry.io/insdc.run:", - "https://identifiers.org/bioproject/", - "https://identifiers.org/bioproject:", - "https://identifiers.org/ena.embl/", - "https://identifiers.org/ena.embl:", - "https://n2t.net/bioproject:", - "https://n2t.net/ena.embl:", - "https://trace.ddbj.nig.ac.jp/BPSearch/bioproject?acc=", - "https://www.ncbi.nlm.nih.gov/bioproject/?term=", - "https://www.ncbi.nlm.nih.gov/bioproject?term=" - ] - }, - { + "pattern": "^ENC[A-Za-z]{2}[0-9]{3}[A-Za-z]{3}$", "prefix": "encode", "uri_prefix": "https://www.encodeproject.org/", "uri_prefix_synonyms": [ @@ -6398,6 +11055,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "enm", "uri_prefix": "http://purl.enanomapper.org/onto/ENM_", "uri_prefix_synonyms": [ @@ -6407,81 +11065,7 @@ ] }, { - "prefix": "ENSEMBL", - "prefix_synonyms": [ - "Ensembl", - "astd", - "ensembl.bacteria", - "ensembl.fungi" - ], - "uri_prefix": "http://rdf.ebi.ac.uk/resource/ensembl/", - "uri_prefix_synonyms": [ - "http://asia.ensembl.org/id/", - "http://bacteria.ensembl.org/[?species_name]/Gene/Summary?g=", - "http://bacteria.ensembl.org/id/", - "http://bgee.org/?page=gene&gene_id=", - "http://bio2rdf.org/astd:", - "http://bio2rdf.org/ensembl.bacteria:", - "http://bio2rdf.org/ensembl.fungi:", - "http://bio2rdf.org/ensembl:", - "http://bioregistry.io/Ensembl:", - "http://bioregistry.io/astd:", - "http://bioregistry.io/ensembl.bacteria:", - "http://bioregistry.io/ensembl.fungi:", - "http://bioregistry.io/ensembl:", - "http://ensembl.org/id/", - "http://fungi.ensembl.org/[?species_name]/Gene/Summary?g=", - "http://fungi.ensembl.org/id/", - "http://genetics.opentargets.org/gene/", - "http://gnomad.broadinstitute.org/gene/", - "http://identifiers.org/ensembl.bacteria/", - "http://identifiers.org/ensembl.bacteria:", - "http://identifiers.org/ensembl.fungi/", - "http://identifiers.org/ensembl.fungi:", - "http://identifiers.org/ensembl/", - "http://identifiers.org/ensembl:", - "http://n2t.net/ensembl.bacteria:", - "http://n2t.net/ensembl.fungi:", - "http://n2t.net/ensembl:", - "http://useast.ensembl.org/id/", - "http://uswest.ensembl.org/id/", - "http://www.ebi.ac.uk/astd/geneview.html?acc=", - "http://www.ensembl.org/id/", - "https://asia.ensembl.org/id/", - "https://bacteria.ensembl.org/[?species_name]/Gene/Summary?g=", - "https://bacteria.ensembl.org/id/", - "https://bgee.org/?page=gene&gene_id=", - "https://bio2rdf.org/astd:", - "https://bio2rdf.org/ensembl.bacteria:", - "https://bio2rdf.org/ensembl.fungi:", - "https://bio2rdf.org/ensembl:", - "https://bioregistry.io/Ensembl:", - "https://bioregistry.io/astd:", - "https://bioregistry.io/ensembl.bacteria:", - "https://bioregistry.io/ensembl.fungi:", - "https://bioregistry.io/ensembl:", - "https://ensembl.org/id/", - "https://fungi.ensembl.org/[?species_name]/Gene/Summary?g=", - "https://fungi.ensembl.org/id/", - "https://genetics.opentargets.org/gene/", - "https://gnomad.broadinstitute.org/gene/", - "https://identifiers.org/ensembl.bacteria/", - "https://identifiers.org/ensembl.bacteria:", - "https://identifiers.org/ensembl.fungi/", - "https://identifiers.org/ensembl.fungi:", - "https://identifiers.org/ensembl/", - "https://identifiers.org/ensembl:", - "https://n2t.net/ensembl.bacteria:", - "https://n2t.net/ensembl.fungi:", - "https://n2t.net/ensembl:", - "https://rdf.ebi.ac.uk/resource/ensembl/", - "https://useast.ensembl.org/id/", - "https://uswest.ensembl.org/id/", - "https://www.ebi.ac.uk/astd/geneview.html?acc=", - "https://www.ensembl.org/id/" - ] - }, - { + "pattern": "^\\w+(\\.)?\\d+$", "prefix": "ensembl.metazoa", "uri_prefix": "https://metazoa.ensembl.org/id/", "uri_prefix_synonyms": [ @@ -6503,6 +11087,7 @@ ] }, { + "pattern": "^\\w+(\\.\\d+)?(\\.\\d+)?$", "prefix": "ensembl.plant", "uri_prefix": "https://plants.ensembl.org/id/", "uri_prefix_synonyms": [ @@ -6522,6 +11107,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "ensembl.protist", "uri_prefix": "https://protists.ensembl.org/id/", "uri_prefix_synonyms": [ @@ -6541,6 +11127,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "ensemblglossary", "uri_prefix": "http://ensembl.org/glossary/ENSGLOSSARY_", "uri_prefix_synonyms": [ @@ -6550,6 +11137,7 @@ ] }, { + "pattern": "^[\\w^_]{8}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{12}\\/[\\w-]+\\/[\\w^_]{8}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{4}-[\\w^_]{12}$", "prefix": "envipath", "uri_prefix": "https://envipath.org/package/", "uri_prefix_synonyms": [ @@ -6562,29 +11150,6 @@ "https://identifiers.org/envipath:" ] }, - { - "prefix": "ENVO", - "uri_prefix": "http://purl.obolibrary.org/obo/ENVO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ENVO:", - "http://bioregistry.io/envo:", - "http://identifiers.org/ENVO/", - "http://identifiers.org/ENVO:", - "http://identifiers.org/envo/ENVO:", - "http://n2t.net/envo:", - "http://purl.bioontology.org/ontology/ENVO/ENVO:", - "http://www.ebi.ac.uk/ols/ontologies/envo/terms?iri=http://purl.obolibrary.org/obo/ENVO_", - "https://bioregistry.io/ENVO:", - "https://bioregistry.io/envo:", - "https://identifiers.org/ENVO/", - "https://identifiers.org/ENVO:", - "https://identifiers.org/envo/ENVO:", - "https://n2t.net/envo:", - "https://purl.bioontology.org/ontology/ENVO/ENVO:", - "https://purl.obolibrary.org/obo/ENVO_", - "https://www.ebi.ac.uk/ols/ontologies/envo/terms?iri=http://purl.obolibrary.org/obo/ENVO_" - ] - }, { "prefix": "enzo", "prefix_synonyms": [ @@ -6600,31 +11165,7 @@ ] }, { - "prefix": "EO", - "uri_prefix": "http://purl.obolibrary.org/obo/EO_", - "uri_prefix_synonyms": [ - "http://archive.gramene.org/db/ontology/search?query=EO:", - "http://bio2rdf.org/eo:", - "http://bioregistry.io/EO:", - "http://bioregistry.io/eo:", - "http://identifiers.org/EO/", - "http://identifiers.org/EO:", - "http://identifiers.org/eo/EO:", - "http://n2t.net/eo:", - "http://purl.bioontology.org/ontology/PECO/EO:", - "https://archive.gramene.org/db/ontology/search?query=EO:", - "https://bio2rdf.org/eo:", - "https://bioregistry.io/EO:", - "https://bioregistry.io/eo:", - "https://identifiers.org/EO/", - "https://identifiers.org/EO:", - "https://identifiers.org/eo/EO:", - "https://n2t.net/eo:", - "https://purl.bioontology.org/ontology/PECO/EO:", - "https://purl.obolibrary.org/obo/EO_" - ] - }, - { + "pattern": "^\\d{7}$", "prefix": "eol", "uri_prefix": "http://purl.org/obo/owlEOL_", "uri_prefix_synonyms": [ @@ -6634,6 +11175,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "eolife", "uri_prefix": "https://eol.org/pages/", "uri_prefix_synonyms": [ @@ -6643,6 +11185,7 @@ ] }, { + "pattern": "^[A-Z-_0-9]+$", "prefix": "epd", "uri_prefix": "https://epd.expasy.org/cgi-bin/epd/query_result.pl?out_format=NICE&Entry_0=", "uri_prefix_synonyms": [ @@ -6662,28 +11205,7 @@ ] }, { - "prefix": "EPIO", - "uri_prefix": "http://purl.obolibrary.org/obo/EPIO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/EPIO:", - "http://bioregistry.io/epio:", - "https://bioregistry.io/EPIO:", - "https://bioregistry.io/epio:", - "https://purl.obolibrary.org/obo/EPIO_" - ] - }, - { - "prefix": "EPO", - "uri_prefix": "http://purl.obolibrary.org/obo/EPO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/EPO:", - "http://bioregistry.io/epo:", - "https://bioregistry.io/EPO:", - "https://bioregistry.io/epo:", - "https://purl.obolibrary.org/obo/EPO_" - ] - }, - { + "pattern": "^\\d{7}$", "prefix": "epso", "uri_prefix": "http://www.case.edu/EpilepsyOntology.owl#", "uri_prefix_synonyms": [ @@ -6693,6 +11215,7 @@ ] }, { + "pattern": "^ERM[0-9]{8}$", "prefix": "erm", "uri_prefix": "https://nanocommons.github.io/identifiers/registry#", "uri_prefix_synonyms": [ @@ -6707,19 +11230,6 @@ "https://n2t.net/erm:" ] }, - { - "prefix": "ERO", - "uri_prefix": "http://purl.obolibrary.org/obo/ERO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ERO:", - "http://bioregistry.io/ero:", - "http://www.ebi.ac.uk/ols/ontologies/ero/terms?iri=http://purl.obolibrary.org/obo/ERO_", - "https://bioregistry.io/ERO:", - "https://bioregistry.io/ero:", - "https://purl.obolibrary.org/obo/ERO_", - "https://www.ebi.ac.uk/ols/ontologies/ero/terms?iri=http://purl.obolibrary.org/obo/ERO_" - ] - }, { "prefix": "eropmoscow", "uri_prefix": "http://erop.inbi.ras.ru/result2.php?PepName=", @@ -6732,6 +11242,7 @@ ] }, { + "pattern": "^[A-Za-z0-9\\-\\_]+$", "prefix": "erv", "uri_prefix": "https://herv.img.cas.cz/s/", "uri_prefix_synonyms": [ @@ -6758,6 +11269,7 @@ ] }, { + "pattern": "^\\d{3}$", "prefix": "estdab", "uri_prefix": "https://www.ebi.ac.uk/cgi-bin/ipd/estdab/print_cell.cgi?ESTDAB-", "uri_prefix_synonyms": [ @@ -6769,6 +11281,7 @@ ] }, { + "pattern": "^[a-z0-9\\-_]+$", "prefix": "eu89h", "uri_prefix": "http://data.europa.eu/89h/", "uri_prefix_synonyms": [ @@ -6784,6 +11297,7 @@ ] }, { + "pattern": "^\\d{4}\\-\\d{6}\\-\\d{2}$", "prefix": "euclinicaltrials", "prefix_synonyms": [ "EUCTR" @@ -6804,45 +11318,18 @@ ] }, { - "prefix": "eugenes", - "uri_prefix": "http://eugenes.org:7072/.bin/fbidq.html?", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/eugenes:", - "http://bioregistry.io/eugenes:", - "https://bio2rdf.org/eugenes:", - "https://bioregistry.io/eugenes:", - "https://eugenes.org:7072/.bin/fbidq.html?" - ] - }, - { - "prefix": "EUPATH", - "uri_prefix": "http://purl.obolibrary.org/obo/EUPATH_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/EUPATH:", - "http://bioregistry.io/eupath:", - "http://www.ebi.ac.uk/ols/ontologies/eupath/terms?iri=http://purl.obolibrary.org/obo/EUPATH_", - "https://bioregistry.io/EUPATH:", - "https://bioregistry.io/eupath:", - "https://purl.obolibrary.org/obo/EUPATH_", - "https://www.ebi.ac.uk/ols/ontologies/eupath/terms?iri=http://purl.obolibrary.org/obo/EUPATH_" - ] - }, - { - "prefix": "EV", - "uri_prefix": "http://purl.obolibrary.org/obo/EV_", + "prefix": "eugenes", + "uri_prefix": "http://eugenes.org:7072/.bin/fbidq.html?", "uri_prefix_synonyms": [ - "http://bio2rdf.org/evoc:", - "http://bioregistry.io/EV:", - "http://bioregistry.io/ev:", - "http://www.evocontology.org/site/Main/BrowseEvoc?x_termid=", - "https://bio2rdf.org/evoc:", - "https://bioregistry.io/EV:", - "https://bioregistry.io/ev:", - "https://purl.obolibrary.org/obo/EV_", - "https://www.evocontology.org/site/Main/BrowseEvoc?x_termid=" + "http://bio2rdf.org/eugenes:", + "http://bioregistry.io/eugenes:", + "https://bio2rdf.org/eugenes:", + "https://bioregistry.io/eugenes:", + "https://eugenes.org:7072/.bin/fbidq.html?" ] }, { + "pattern": "^ENSG\\d{11}$", "prefix": "exac.gene", "uri_prefix": "http://exac.broadinstitute.org/gene/", "uri_prefix_synonyms": [ @@ -6858,6 +11345,7 @@ ] }, { + "pattern": "^ENST\\d{11}$", "prefix": "exac.transcript", "uri_prefix": "http://exac.broadinstitute.org/transcript/", "uri_prefix_synonyms": [ @@ -6873,6 +11361,7 @@ ] }, { + "pattern": "^\\d{1,2}\\-\\d+\\-[GATC]\\-[GATC]$", "prefix": "exac.variant", "uri_prefix": "http://exac.broadinstitute.org/variant/", "uri_prefix_synonyms": [ @@ -6887,19 +11376,6 @@ "https://n2t.net/exac.variant:" ] }, - { - "prefix": "ExO", - "uri_prefix": "http://purl.obolibrary.org/obo/ExO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ExO:", - "http://bioregistry.io/exo:", - "http://www.ebi.ac.uk/ols/ontologies/exo/terms?iri=http://purl.obolibrary.org/obo/ExO_", - "https://bioregistry.io/ExO:", - "https://bioregistry.io/exo:", - "https://purl.obolibrary.org/obo/ExO_", - "https://www.ebi.ac.uk/ols/ontologies/exo/terms?iri=http://purl.obolibrary.org/obo/ExO_" - ] - }, { "prefix": "fabio", "uri_prefix": "https://sparontologies.github.io/fabio/current/fabio.html#", @@ -6912,6 +11388,7 @@ ] }, { + "pattern": "^FB\\d{8}$", "prefix": "facebase", "uri_prefix": "https://www.facebase.org/data/record/#1/isa:dataset/accession=", "uri_prefix_synonyms": [ @@ -6927,6 +11404,7 @@ ] }, { + "pattern": "^(bsg-[dscp]?\\d{6})|(FAIRsharing\\.\\w+)$", "prefix": "fairsharing", "uri_prefix": "https://fairsharing.org/", "uri_prefix_synonyms": [ @@ -6942,6 +11420,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "fairsharing.organization", "uri_prefix": "https://fairsharing.org/organisations/", "uri_prefix_synonyms": [ @@ -6951,6 +11430,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "fairsharing.user", "uri_prefix": "https://fairsharing.org/users/", "uri_prefix_synonyms": [ @@ -6969,21 +11449,7 @@ ] }, { - "prefix": "FAO", - "uri_prefix": "http://purl.obolibrary.org/obo/FAO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/fao:", - "http://bioregistry.io/FAO:", - "http://bioregistry.io/fao:", - "http://www.ebi.ac.uk/ols/ontologies/fao/terms?iri=http://purl.obolibrary.org/obo/FAO_", - "https://bio2rdf.org/fao:", - "https://bioregistry.io/FAO:", - "https://bioregistry.io/fao:", - "https://purl.obolibrary.org/obo/FAO_", - "https://www.ebi.ac.uk/ols/ontologies/fao/terms?iri=http://purl.obolibrary.org/obo/FAO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "fao.asfis", "prefix_synonyms": [ "asfis" @@ -6998,60 +11464,7 @@ ] }, { - "prefix": "FBbi", - "uri_prefix": "http://purl.obolibrary.org/obo/FBbi_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/fbbi:", - "http://bioregistry.io/FBbi:", - "http://bioregistry.io/fbbi:", - "http://www.ebi.ac.uk/ols/ontologies/fbbi/terms?iri=http://purl.obolibrary.org/obo/FBbi_", - "https://bio2rdf.org/fbbi:", - "https://bioregistry.io/FBbi:", - "https://bioregistry.io/fbbi:", - "https://purl.obolibrary.org/obo/FBbi_", - "https://www.ebi.ac.uk/ols/ontologies/fbbi/terms?iri=http://purl.obolibrary.org/obo/FBbi_" - ] - }, - { - "prefix": "FBbt", - "prefix_synonyms": [ - "FBbt_root" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/FBbt_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/fbbt:", - "http://bioregistry.io/FBbt:", - "http://bioregistry.io/FBbt_root:", - "http://bioregistry.io/fbbt:", - "http://flybase.org/cgi-bin/cvreport.pl?id=FBbt:", - "http://flybase.org/cgi-bin/fbcvq.html?query=FBbt:", - "http://www.ebi.ac.uk/ols/ontologies/fbbt/terms?iri=http://purl.obolibrary.org/obo/FBbt_", - "https://bio2rdf.org/fbbt:", - "https://bioregistry.io/FBbt:", - "https://bioregistry.io/FBbt_root:", - "https://bioregistry.io/fbbt:", - "https://flybase.org/cgi-bin/cvreport.pl?id=FBbt:", - "https://flybase.org/cgi-bin/fbcvq.html?query=FBbt:", - "https://purl.obolibrary.org/obo/FBbt_", - "https://www.ebi.ac.uk/ols/ontologies/fbbt/terms?iri=http://purl.obolibrary.org/obo/FBbt_" - ] - }, - { - "prefix": "FBdv", - "uri_prefix": "http://purl.obolibrary.org/obo/FBdv_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/fbdv:", - "http://bioregistry.io/FBdv:", - "http://bioregistry.io/fbdv:", - "http://www.ebi.ac.uk/ols/ontologies/fbdv/terms?iri=http://purl.obolibrary.org/obo/FBdv_", - "https://bio2rdf.org/fbdv:", - "https://bioregistry.io/FBdv:", - "https://bioregistry.io/fbdv:", - "https://purl.obolibrary.org/obo/FBdv_", - "https://www.ebi.ac.uk/ols/ontologies/fbdv/terms?iri=http://purl.obolibrary.org/obo/FBdv_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "fbol", "uri_prefix": "https://identifiers.org/fbol:", "uri_prefix_synonyms": [ @@ -7065,6 +11478,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "fbrf", "uri_prefix": "https://flybase.org/reports/FBrf", "uri_prefix_synonyms": [ @@ -7074,19 +11488,7 @@ ] }, { - "prefix": "FBSP", - "uri_prefix": "http://purl.obolibrary.org/obo/FBSP_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/FBSP:", - "http://bioregistry.io/fbsp:", - "http://www.ebi.ac.uk/ols/ontologies/fbsp/terms?iri=http://purl.obolibrary.org/obo/FBSP_", - "https://bioregistry.io/FBSP:", - "https://bioregistry.io/fbsp:", - "https://purl.obolibrary.org/obo/FBSP_", - "https://www.ebi.ac.uk/ols/ontologies/fbsp/terms?iri=http://purl.obolibrary.org/obo/FBSP_" - ] - }, - { + "pattern": "^\\d{7}$", "prefix": "fbtc", "prefix_synonyms": [ "FlyBase_Cell_line" @@ -7101,6 +11503,7 @@ ] }, { + "pattern": "^FCB\\d{3}$", "prefix": "fcb", "uri_prefix": "https://w3id.org/faircookbook/", "uri_prefix_synonyms": [ @@ -7132,19 +11535,7 @@ ] }, { - "prefix": "FIDEO", - "uri_prefix": "http://purl.obolibrary.org/obo/FIDEO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/FIDEO:", - "http://bioregistry.io/fideo:", - "http://www.ebi.ac.uk/ols/ontologies/fideo/terms?iri=http://purl.obolibrary.org/obo/FIDEO_", - "https://bioregistry.io/FIDEO:", - "https://bioregistry.io/fideo:", - "https://purl.obolibrary.org/obo/FIDEO_", - "https://www.ebi.ac.uk/ols/ontologies/fideo/terms?iri=http://purl.obolibrary.org/obo/FIDEO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "fishbase.species", "prefix_synonyms": [ "fishbase" @@ -7159,34 +11550,7 @@ ] }, { - "prefix": "FIX", - "uri_prefix": "http://purl.obolibrary.org/obo/FIX_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/fix:", - "http://bioregistry.io/FIX:", - "http://bioregistry.io/fix:", - "http://www.ebi.ac.uk/ols/ontologies/fix/terms?iri=http://purl.obolibrary.org/obo/FIX_", - "https://bio2rdf.org/fix:", - "https://bioregistry.io/FIX:", - "https://bioregistry.io/fix:", - "https://purl.obolibrary.org/obo/FIX_", - "https://www.ebi.ac.uk/ols/ontologies/fix/terms?iri=http://purl.obolibrary.org/obo/FIX_" - ] - }, - { - "prefix": "FLOPO", - "uri_prefix": "http://purl.obolibrary.org/obo/FLOPO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/FLOPO:", - "http://bioregistry.io/flopo:", - "http://www.ebi.ac.uk/ols/ontologies/flopo/terms?iri=http://purl.obolibrary.org/obo/FLOPO_", - "https://bioregistry.io/FLOPO:", - "https://bioregistry.io/flopo:", - "https://purl.obolibrary.org/obo/FLOPO_", - "https://www.ebi.ac.uk/ols/ontologies/flopo/terms?iri=http://purl.obolibrary.org/obo/FLOPO_" - ] - }, - { + "pattern": "^FR\\-FCM\\-\\w{4}$", "prefix": "flowrepository", "uri_prefix": "https://flowrepository.org/id/", "uri_prefix_synonyms": [ @@ -7201,52 +11565,6 @@ "https://n2t.net/flowrepository:" ] }, - { - "prefix": "FLU", - "uri_prefix": "http://purl.obolibrary.org/obo/FLU_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/FLU:", - "http://bioregistry.io/flu:", - "https://bioregistry.io/FLU:", - "https://bioregistry.io/flu:", - "https://purl.obolibrary.org/obo/FLU_" - ] - }, - { - "prefix": "FlyBase", - "prefix_synonyms": [ - "FB", - "fbcv" - ], - "uri_prefix": "https://flybase.org/reports/", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/fbcv:", - "http://bio2rdf.org/flybase:", - "http://bioregistry.io/FB:", - "http://bioregistry.io/FBcv:", - "http://bioregistry.io/FlyBase:", - "http://bioregistry.io/fbcv:", - "http://bioregistry.io/flybase:", - "http://flybase.org/reports/", - "http://identifiers.org/fb/", - "http://identifiers.org/fb:", - "http://n2t.net/fb:", - "http://www.alliancegenome.org/gene/FB:", - "http://www.ebi.ac.uk/ols/ontologies/fbcv/terms?iri=http://purl.obolibrary.org/obo/FBcv_", - "https://bio2rdf.org/fbcv:", - "https://bio2rdf.org/flybase:", - "https://bioregistry.io/FB:", - "https://bioregistry.io/FBcv:", - "https://bioregistry.io/FlyBase:", - "https://bioregistry.io/fbcv:", - "https://bioregistry.io/flybase:", - "https://identifiers.org/fb/", - "https://identifiers.org/fb:", - "https://n2t.net/fb:", - "https://www.alliancegenome.org/gene/FB:", - "https://www.ebi.ac.uk/ols/ontologies/fbcv/terms?iri=http://purl.obolibrary.org/obo/FBcv_" - ] - }, { "prefix": "flymine.chromosome", "uri_prefix": "https://www.flymine.org/flymine/report/ChromosomeBand/", @@ -7257,69 +11575,20 @@ "http://www.flymine.org/release-25.0/objectDetails.do?id=", "https://bio2rdf.org/flymine:", "https://bioregistry.io/flymine.chromosome:", - "https://www.flymine.org/release-25.0/objectDetails.do?id=" - ] - }, - { - "prefix": "FMA", - "prefix_synonyms": [ - "FMAID", - "FMA_RETIRED" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/FMA_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/fma:", - "http://bioregistry.io/FMA:", - "http://bioregistry.io/FMAID:", - "http://bioregistry.io/FMA_RETIRED:", - "http://bioregistry.io/fma:", - "http://identifiers.org/FMA/", - "http://identifiers.org/FMA:", - "http://identifiers.org/fma/FMA:", - "http://n2t.net/fma:", - "http://purl.bioontology.org/ontology/FMA_subset/FMA:", - "http://purl.org/sig/ont/fma/fma", - "http://www.ebi.ac.uk/ols/ontologies/fma/terms?iri=http://purl.obolibrary.org/obo/FMA_", - "https://bio2rdf.org/fma:", - "https://bioregistry.io/FMA:", - "https://bioregistry.io/FMAID:", - "https://bioregistry.io/FMA_RETIRED:", - "https://bioregistry.io/fma:", - "https://identifiers.org/FMA/", - "https://identifiers.org/FMA:", - "https://identifiers.org/fma/FMA:", - "https://n2t.net/fma:", - "https://purl.bioontology.org/ontology/FMA_subset/FMA:", - "https://purl.obolibrary.org/obo/FMA_", - "https://purl.org/sig/ont/fma/fma", - "https://www.ebi.ac.uk/ols/ontologies/fma/terms?iri=http://purl.obolibrary.org/obo/FMA_" - ] - }, - { - "prefix": "foaf", - "uri_prefix": "http://xmlns.com/foaf/0.1/", - "uri_prefix_synonyms": [ - "http://bioregistry.io/foaf:", - "https://bioregistry.io/foaf:", - "https://xmlns.com/foaf/0.1/" - ] - }, - { - "prefix": "FOBI", - "uri_prefix": "http://purl.obolibrary.org/obo/FOBI_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/FOBI:", - "http://bioregistry.io/fobi:", - "http://purl.obolibrary.org/obo/fobi.owl#FOBI:", - "http://www.ebi.ac.uk/ols/ontologies/fobi/terms?iri=http://purl.obolibrary.org/obo/FOBI_", - "https://bioregistry.io/FOBI:", - "https://bioregistry.io/fobi:", - "https://purl.obolibrary.org/obo/FOBI_", - "https://purl.obolibrary.org/obo/fobi.owl#FOBI:", - "https://www.ebi.ac.uk/ols/ontologies/fobi/terms?iri=http://purl.obolibrary.org/obo/FOBI_" + "https://www.flymine.org/release-25.0/objectDetails.do?id=" + ] + }, + { + "prefix": "foaf", + "uri_prefix": "http://xmlns.com/foaf/0.1/", + "uri_prefix_synonyms": [ + "http://bioregistry.io/foaf:", + "https://bioregistry.io/foaf:", + "https://xmlns.com/foaf/0.1/" ] }, { + "pattern": "^FDB\\d+$", "prefix": "foodb.compound", "prefix_synonyms": [ "foodb" @@ -7340,6 +11609,7 @@ ] }, { + "pattern": "^FOOD\\d+$", "prefix": "foodb.food", "uri_prefix": "https://foodb.ca/foods/", "uri_prefix_synonyms": [ @@ -7358,31 +11628,7 @@ ] }, { - "prefix": "FOODON", - "uri_prefix": "http://purl.obolibrary.org/obo/FOODON_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/FOODON:", - "http://bioregistry.io/foodon:", - "http://identifiers.org/FOODON/", - "http://identifiers.org/FOODON:", - "http://identifiers.org/foodon/FOODON:", - "http://n2t.net/foodon:", - "http://www.ebi.ac.uk/ols/ontologies/foodon/terms?iri=http://purl.obolibrary.org/obo/FOODON_", - "http://www.ebi.ac.uk/ols/ontologies/foodon/terms?obo_id=FOODON:", - "http://www.ebi.ac.uk/ols4/ontologies/foodon/terms?obo_id=FOODON:", - "https://bioregistry.io/FOODON:", - "https://bioregistry.io/foodon:", - "https://identifiers.org/FOODON/", - "https://identifiers.org/FOODON:", - "https://identifiers.org/foodon/FOODON:", - "https://n2t.net/foodon:", - "https://purl.obolibrary.org/obo/FOODON_", - "https://www.ebi.ac.uk/ols/ontologies/foodon/terms?iri=http://purl.obolibrary.org/obo/FOODON_", - "https://www.ebi.ac.uk/ols/ontologies/foodon/terms?obo_id=FOODON:", - "https://www.ebi.ac.uk/ols4/ontologies/foodon/terms?obo_id=FOODON:" - ] - }, - { + "pattern": "^\\d+$", "prefix": "fossilworks.journal", "uri_prefix": "http://fossilworks.org/?a=referenceInfo&reference_no=", "uri_prefix_synonyms": [ @@ -7394,6 +11640,7 @@ ] }, { + "pattern": "^[1-9]\\d{0,5}$", "prefix": "fossilworks.taxon", "uri_prefix": "http://www.fossilworks.org/cgi-bin/bridge.pl?a=taxonInfo&taxon_no=", "uri_prefix_synonyms": [ @@ -7403,19 +11650,7 @@ ] }, { - "prefix": "FOVT", - "uri_prefix": "http://purl.obolibrary.org/obo/FOVT_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/FOVT:", - "http://bioregistry.io/fovt:", - "http://www.ebi.ac.uk/ols/ontologies/fovt/terms?iri=http://purl.obolibrary.org/obo/FOVT_", - "https://bioregistry.io/FOVT:", - "https://bioregistry.io/fovt:", - "https://purl.obolibrary.org/obo/FOVT_", - "https://www.ebi.ac.uk/ols/ontologies/fovt/terms?iri=http://purl.obolibrary.org/obo/FOVT_" - ] - }, - { + "pattern": "^[a-zA-Z0-9][A-Za-z0-9_]+$", "prefix": "fplx", "prefix_synonyms": [ "famplex" @@ -7437,28 +11672,6 @@ "https://n2t.net/fplx:" ] }, - { - "prefix": "FRAPO", - "uri_prefix": "http://purl.org/cerif/frapo/", - "uri_prefix_synonyms": [ - "http://bioregistry.io/FRAPO:", - "http://bioregistry.io/frapo:", - "https://bioregistry.io/FRAPO:", - "https://bioregistry.io/frapo:", - "https://purl.org/cerif/frapo/" - ] - }, - { - "prefix": "FRBR", - "uri_prefix": "http://purl.org/vocab/frbr/core#", - "uri_prefix_synonyms": [ - "http://bioregistry.io/FRBR:", - "http://bioregistry.io/frbr:", - "https://bioregistry.io/FRBR:", - "https://bioregistry.io/frbr:", - "https://purl.org/vocab/frbr/core#" - ] - }, { "prefix": "frbrer", "uri_prefix": "http://iflastandards.info/ns/fr/frbr/frbrer/", @@ -7469,6 +11682,7 @@ ] }, { + "pattern": "^rs\\d+$", "prefix": "fsnp", "uri_prefix": "http://compbio.cs.queensu.ca/cgi-bin/compbio/search/main.cgi?search_mode=id&id_type=snp_id&id_val=", "uri_prefix_synonyms": [ @@ -7486,6 +11700,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ftt", "uri_prefix": "https://apps.usgs.gov/thesaurus/term-simple.php?thcode=3&code=", "uri_prefix_synonyms": [ @@ -7495,6 +11710,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "funcbase.fly", "uri_prefix": "http://func.mshri.on.ca/fly/genes/list_functional_scores/", "uri_prefix_synonyms": [ @@ -7510,6 +11726,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "funcbase.human", "uri_prefix": "http://func.mshri.on.ca/human/genes/list_functional_scores/", "uri_prefix_synonyms": [ @@ -7525,6 +11742,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "funcbase.mouse", "uri_prefix": "http://func.mshri.on.ca/mouse/genes/list_functional_scores/", "uri_prefix_synonyms": [ @@ -7540,6 +11758,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "funcbase.yeast", "uri_prefix": "http://func.mshri.on.ca/yeast/genes/list_functional_scores/", "uri_prefix_synonyms": [ @@ -7555,6 +11774,7 @@ ] }, { + "pattern": "^\\d{9,9}$", "prefix": "funderregistry", "prefix_synonyms": [ "FundRef", @@ -7578,6 +11798,7 @@ ] }, { + "pattern": "^[A-Za-z_0-9]+$", "prefix": "fungidb", "uri_prefix": "https://fungidb.org/fungidb/app/record/gene/", "uri_prefix_synonyms": [ @@ -7593,6 +11814,7 @@ ] }, { + "pattern": "^[1-9]\\d{0,5}$", "prefix": "fungorum", "uri_prefix": "http://www.indexfungorum.org/names/NamesRecord.asp?RecordID=", "uri_prefix_synonyms": [ @@ -7602,19 +11824,7 @@ ] }, { - "prefix": "FYPO", - "uri_prefix": "http://purl.obolibrary.org/obo/FYPO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/FYPO:", - "http://bioregistry.io/fypo:", - "http://www.ebi.ac.uk/ols/ontologies/fypo/terms?iri=http://purl.obolibrary.org/obo/FYPO_", - "https://bioregistry.io/FYPO:", - "https://bioregistry.io/fypo:", - "https://purl.obolibrary.org/obo/FYPO_", - "https://www.ebi.ac.uk/ols/ontologies/fypo/terms?iri=http://purl.obolibrary.org/obo/FYPO_" - ] - }, - { + "pattern": "^[a-zA-Z0-9\\-:#/\\.]+$", "prefix": "ga4ghdos", "uri_prefix": "https://dataguids.org/ga4gh/dos/v1/dataobjects/", "uri_prefix_synonyms": [ @@ -7630,6 +11840,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "gabi", "uri_prefix": "https://identifiers.org/gabi:", "uri_prefix_synonyms": [ @@ -7663,6 +11874,7 @@ ] }, { + "pattern": "^[a-fA-F0-9]{8}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{4}-[a-fA-F0-9]{12}$", "prefix": "gateway", "uri_prefix": "https://web.www.healthdatagateway.org/dataset/", "uri_prefix_synonyms": [ @@ -7676,19 +11888,7 @@ ] }, { - "prefix": "GAZ", - "uri_prefix": "http://purl.obolibrary.org/obo/GAZ_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/GAZ:", - "http://bioregistry.io/gaz:", - "http://www.ebi.ac.uk/ols/ontologies/gaz/terms?iri=http://purl.obolibrary.org/obo/GAZ_", - "https://bioregistry.io/GAZ:", - "https://bioregistry.io/gaz:", - "https://purl.obolibrary.org/obo/GAZ_", - "https://www.ebi.ac.uk/ols/ontologies/gaz/terms?iri=http://purl.obolibrary.org/obo/GAZ_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "gbif", "uri_prefix": "https://www.gbif.org/species/", "uri_prefix_synonyms": [ @@ -7698,6 +11898,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "gc", "prefix_synonyms": [ "gc_id" @@ -7712,6 +11913,7 @@ ] }, { + "pattern": "^GCST\\d{6}\\d*$", "prefix": "gcst", "uri_prefix": "https://www.ebi.ac.uk/gwas/studies/", "uri_prefix_synonyms": [ @@ -7727,6 +11929,7 @@ ] }, { + "pattern": "^[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$", "prefix": "gdc", "uri_prefix": "https://portal.gdc.cancer.gov/cases/", "uri_prefix_synonyms": [ @@ -7742,6 +11945,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "gdsc", "uri_prefix": "https://www.cancerrxgene.org/translation/Drug/", "uri_prefix_synonyms": [ @@ -7759,6 +11963,7 @@ ] }, { + "pattern": "^[dp]\\.[a-z0-9]{8}$", "prefix": "gear", "uri_prefix": "https://umgear.org/p?id=", "uri_prefix_synonyms": [ @@ -7768,19 +11973,7 @@ ] }, { - "prefix": "GECKO", - "uri_prefix": "http://purl.obolibrary.org/obo/GECKO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/GECKO:", - "http://bioregistry.io/gecko:", - "http://www.ebi.ac.uk/ols/ontologies/gecko/terms?iri=http://purl.obolibrary.org/obo/GECKO_", - "https://bioregistry.io/GECKO:", - "https://bioregistry.io/gecko:", - "https://purl.obolibrary.org/obo/GECKO_", - "https://www.ebi.ac.uk/ols/ontologies/gecko/terms?iri=http://purl.obolibrary.org/obo/GECKO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "gemet", "uri_prefix": "https://www.eionet.europa.eu/gemet/en/concept/", "uri_prefix_synonyms": [ @@ -7790,6 +11983,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "genatlas", "uri_prefix": "http://genatlas.medecine.univ-paris5.fr/fiche.php?symbol=", "uri_prefix_synonyms": [ @@ -7842,6 +12036,7 @@ ] }, { + "pattern": "^[A-Za-z-0-9_]+(\\@)?$", "prefix": "genecards", "uri_prefix": "https://www.genecards.org/cgi-bin/carddisp.pl?gene=", "uri_prefix_synonyms": [ @@ -7870,6 +12065,7 @@ ] }, { + "pattern": "^[\\w\\d\\.-]*$", "prefix": "genedb", "uri_prefix": "https://www.genedb.org/gene/", "uri_prefix_synonyms": [ @@ -7889,6 +12085,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "genefarm", "uri_prefix": "https://urgi.versailles.inra.fr/Genefarm/Gene/display_gene.htpl?GENE_ID=", "uri_prefix_synonyms": [ @@ -7906,19 +12103,7 @@ ] }, { - "prefix": "GENEPIO", - "uri_prefix": "http://purl.obolibrary.org/obo/GENEPIO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/GENEPIO:", - "http://bioregistry.io/genepio:", - "http://www.ebi.ac.uk/ols/ontologies/genepio/terms?iri=http://purl.obolibrary.org/obo/GENEPIO_", - "https://bioregistry.io/GENEPIO:", - "https://bioregistry.io/genepio:", - "https://purl.obolibrary.org/obo/GENEPIO_", - "https://www.ebi.ac.uk/ols/ontologies/genepio/terms?iri=http://purl.obolibrary.org/obo/GENEPIO_" - ] - }, - { + "pattern": "^ENSGT\\d+$", "prefix": "genetree", "uri_prefix": "http://www.ensembl.org/Multi/GeneTree/Image?db=core;gt=", "uri_prefix_synonyms": [ @@ -7938,19 +12123,7 @@ ] }, { - "prefix": "GENO", - "uri_prefix": "http://purl.obolibrary.org/obo/GENO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/GENO:", - "http://bioregistry.io/geno:", - "http://www.ebi.ac.uk/ols/ontologies/geno/terms?iri=http://purl.obolibrary.org/obo/GENO_", - "https://bioregistry.io/GENO:", - "https://bioregistry.io/geno:", - "https://purl.obolibrary.org/obo/GENO_", - "https://www.ebi.ac.uk/ols/ontologies/geno/terms?iri=http://purl.obolibrary.org/obo/GENO_" - ] - }, - { + "pattern": "^\\w{3}\\d{5}(\\.\\d+)?$", "prefix": "genpept", "uri_prefix": "https://identifiers.org/genpept:", "uri_prefix_synonyms": [ @@ -7964,6 +12137,7 @@ ] }, { + "pattern": "^GenProp\\d+$", "prefix": "genprop", "uri_prefix": "https://www.ebi.ac.uk/interpro/genomeproperties/#", "uri_prefix_synonyms": [ @@ -7983,6 +12157,7 @@ ] }, { + "pattern": "^G(PL|SM|SE|DS)\\d+$", "prefix": "geo", "uri_prefix": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=", "uri_prefix_synonyms": [ @@ -8002,25 +12177,7 @@ ] }, { - "prefix": "GEO", - "uri_prefix": "http://purl.obolibrary.org/obo/GEO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/GEOGEO:", - "http://bioregistry.io/geogeo:", - "http://identifiers.org/GEOGEO/", - "http://identifiers.org/GEOGEO:", - "http://identifiers.org/geogeo/GEO_", - "http://www.ebi.ac.uk/ols/ontologies/geo/terms?iri=http://purl.obolibrary.org/obo/GEO_", - "https://bioregistry.io/GEOGEO:", - "https://bioregistry.io/geogeo:", - "https://identifiers.org/GEOGEO/", - "https://identifiers.org/GEOGEO:", - "https://identifiers.org/geogeo/GEO_", - "https://purl.obolibrary.org/obo/GEO_", - "https://www.ebi.ac.uk/ols/ontologies/geo/terms?iri=http://purl.obolibrary.org/obo/GEO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "geonames", "prefix_synonyms": [ "Geomames", @@ -8056,6 +12213,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "giardiadb", "uri_prefix": "https://giardiadb.org/giardiadb/app/record/gene/", "uri_prefix_synonyms": [ @@ -8075,6 +12233,7 @@ ] }, { + "pattern": "^[a-zA-Z0-9-_]+(/[a-zA-Z0-9-_]+)?$", "prefix": "github", "uri_prefix": "https://github.com/", "uri_prefix_synonyms": [ @@ -8106,6 +12265,7 @@ ] }, { + "pattern": "^.*/.*$", "prefix": "gitlab", "uri_prefix": "https://gitlab.com/", "uri_prefix_synonyms": [ @@ -8119,6 +12279,7 @@ ] }, { + "pattern": "^[A-Z-_0-9]+$", "prefix": "glida.gpcr", "uri_prefix": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/gpcr_information.php?id=", "uri_prefix_synonyms": [ @@ -8134,6 +12295,7 @@ ] }, { + "pattern": "^L\\d+$", "prefix": "glida.ligand", "uri_prefix": "http://pharminfo.pharm.kyoto-u.ac.jp/services/glida/ligand_information.php?id=", "uri_prefix_synonyms": [ @@ -8149,6 +12311,7 @@ ] }, { + "pattern": "^EP\\d{4}$", "prefix": "glycoepitope", "uri_prefix": "https://www.glycoepitope.jp/epitopes/", "uri_prefix_synonyms": [ @@ -8175,6 +12338,7 @@ ] }, { + "pattern": "^GN_[A-Za-z0-9_:]+$", "prefix": "glyconavi", "uri_prefix": "https://glyconavi.org/hub/?id=", "uri_prefix_synonyms": [ @@ -8188,6 +12352,7 @@ ] }, { + "pattern": "^GPST[0-9]{6}$", "prefix": "glycopost", "uri_prefix": "https://glycopost.glycosmos.org/entry/", "uri_prefix_synonyms": [ @@ -8201,6 +12366,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "glycosciencesdb", "prefix_synonyms": [ "glycosciences.db" @@ -8224,6 +12390,7 @@ ] }, { + "pattern": "^G[0-9]{5}[A-Z]{2}$", "prefix": "glytoucan", "prefix_synonyms": [ "glycomedb" @@ -8254,6 +12421,7 @@ ] }, { + "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "prefix": "gmd", "uri_prefix": "https://identifiers.org/gmd:", "uri_prefix_synonyms": [ @@ -8267,6 +12435,7 @@ ] }, { + "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "prefix": "gmd.analyte", "uri_prefix": "http://gmd.mpimp-golm.mpg.de/Analytes/", "uri_prefix_synonyms": [ @@ -8282,6 +12451,7 @@ ] }, { + "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "prefix": "gmd.gcms", "uri_prefix": "http://gmd.mpimp-golm.mpg.de/Spectrums/", "uri_prefix_synonyms": [ @@ -8297,6 +12467,7 @@ ] }, { + "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "prefix": "gmd.profile", "uri_prefix": "http://gmd.mpimp-golm.mpg.de/profile/default.aspx?XemlId=", "uri_prefix_synonyms": [ @@ -8312,6 +12483,7 @@ ] }, { + "pattern": "^([0-9a-fA-F]){8}(-([0-9a-fA-F]){4}){3}-([0-9a-fA-F]){12}$", "prefix": "gmd.ref", "uri_prefix": "http://gmd.mpimp-golm.mpg.de/ReferenceSubstances/", "uri_prefix_synonyms": [ @@ -8327,6 +12499,7 @@ ] }, { + "pattern": "^[0-9X\\-]+$", "prefix": "gnd", "uri_prefix": "https://lobid.org/gnd/", "uri_prefix_synonyms": [ @@ -8339,28 +12512,6 @@ "https://identifiers.org/gnd:" ] }, - { - "prefix": "GNO", - "prefix_synonyms": [ - "gnome" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/GNO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/GNO:", - "http://bioregistry.io/gno:", - "http://bioregistry.io/gnome:", - "http://gnome.glyomics.org/CompositionBrowser.html?focus=", - "http://gnome.glyomics.org/StructureBrowser.html?focus=", - "http://www.ebi.ac.uk/ols/ontologies/gno/terms?iri=http://purl.obolibrary.org/obo/GNO_", - "https://bioregistry.io/GNO:", - "https://bioregistry.io/gno:", - "https://bioregistry.io/gnome:", - "https://gnome.glyomics.org/CompositionBrowser.html?focus=", - "https://gnome.glyomics.org/StructureBrowser.html?focus=", - "https://purl.obolibrary.org/obo/GNO_", - "https://www.ebi.ac.uk/ols/ontologies/gno/terms?iri=http://purl.obolibrary.org/obo/GNO_" - ] - }, { "prefix": "gnomad", "uri_prefix": "https://gnomad.broadinstitute.org/variant/", @@ -8371,92 +12522,29 @@ ] }, { + "pattern": "^[A-Za-z0-9]+$", "prefix": "gnpis", "uri_prefix": "https://urgi.versailles.inra.fr/gnpis/#result/term=", "uri_prefix_synonyms": [ "http://bioregistry.io/gnpis:", "http://identifiers.org/gnpis/", "http://identifiers.org/gnpis:", - "http://n2t.net/gnpis:", - "http://urgi.versailles.inra.fr/gnpis/#result/term=", - "https://bioregistry.io/gnpis:", - "https://identifiers.org/gnpis/", - "https://identifiers.org/gnpis:", - "https://n2t.net/gnpis:" - ] - }, - { - "prefix": "gnps.task", - "uri_prefix": "https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=", - "uri_prefix_synonyms": [ - "http://bioregistry.io/gnps.task:", - "http://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=", - "https://bioregistry.io/gnps.task:" - ] - }, - { - "prefix": "GO", - "prefix_synonyms": [ - "gobp", - "gobpid", - "gocc", - "goccid", - "gomf", - "gomfid" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/GO_", - "uri_prefix_synonyms": [ - "http://amigo.geneontology.org/amigo/term/", - "http://amigo.geneontology.org/amigo/term/GO:", - "http://amigo.geneontology.org/cgi-bin/amigo/term-details.cgi?term=GO:", - "http://bio2rdf.org/go:", - "http://bioregistry.io/GO:", - "http://bioregistry.io/go:", - "http://bioregistry.io/gobp:", - "http://bioregistry.io/gobpid:", - "http://bioregistry.io/gocc:", - "http://bioregistry.io/goccid:", - "http://bioregistry.io/gomf:", - "http://bioregistry.io/gomfid:", - "http://identifiers.org/GO/", - "http://identifiers.org/GO:", - "http://identifiers.org/go/GO:", - "http://identifiers.org/obo.go/GO:", - "http://n2t.net/go:", - "http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:", - "http://www.ebi.ac.uk/QuickGO/term/", - "http://www.ebi.ac.uk/ols/ontologies/go/terms?iri=http://purl.obolibrary.org/obo/GO_", - "http://www.geneontology.org/GO:", - "http://www.informatics.jax.org/searches/GO.cgi?id=GO:", - "http://www.informatics.jax.org/vocab/gene_ontology/GO:", - "http://www.nextprot.org/term/GO:", - "http://www.pantherdb.org/panther/category.do?categoryAcc=GO:", - "https://amigo.geneontology.org/amigo/term/", - "https://amigo.geneontology.org/amigo/term/GO:", - "https://amigo.geneontology.org/cgi-bin/amigo/term-details.cgi?term=GO:", - "https://bio2rdf.org/go:", - "https://bioregistry.io/GO:", - "https://bioregistry.io/go:", - "https://bioregistry.io/gobp:", - "https://bioregistry.io/gobpid:", - "https://bioregistry.io/gocc:", - "https://bioregistry.io/goccid:", - "https://bioregistry.io/gomf:", - "https://bioregistry.io/gomfid:", - "https://identifiers.org/GO/", - "https://identifiers.org/GO:", - "https://identifiers.org/go/GO:", - "https://identifiers.org/obo.go/GO:", - "https://n2t.net/go:", - "https://purl.obolibrary.org/obo/GO_", - "https://www.ebi.ac.uk/QuickGO/GTerm?id=GO:", - "https://www.ebi.ac.uk/QuickGO/term/", - "https://www.ebi.ac.uk/ols/ontologies/go/terms?iri=http://purl.obolibrary.org/obo/GO_", - "https://www.geneontology.org/GO:", - "https://www.informatics.jax.org/searches/GO.cgi?id=GO:", - "https://www.informatics.jax.org/vocab/gene_ontology/GO:", - "https://www.nextprot.org/term/GO:", - "https://www.pantherdb.org/panther/category.do?categoryAcc=GO:" + "http://n2t.net/gnpis:", + "http://urgi.versailles.inra.fr/gnpis/#result/term=", + "https://bioregistry.io/gnpis:", + "https://identifiers.org/gnpis/", + "https://identifiers.org/gnpis:", + "https://n2t.net/gnpis:" + ] + }, + { + "pattern": "^[a-f0-9]+$", + "prefix": "gnps.task", + "uri_prefix": "https://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=", + "uri_prefix_synonyms": [ + "http://bioregistry.io/gnps.task:", + "http://gnps.ucsd.edu/ProteoSAFe/status.jsp?task=", + "https://bioregistry.io/gnps.task:" ] }, { @@ -8480,6 +12568,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "go.ref", "uri_prefix": "https://github.com/geneontology/go-site/blob/master/metadata/gorefs/README.md#goref", "uri_prefix_synonyms": [ @@ -8510,28 +12599,7 @@ ] }, { - "prefix": "GOCHE", - "prefix_synonyms": [ - "go.chebi", - "go.chemical", - "go.chemicals" - ], - "uri_prefix": "https://biopragmatics.github.io/providers/goche/", - "uri_prefix_synonyms": [ - "http://biopragmatics.github.io/providers/goche/", - "http://bioregistry.io/GOCHE:", - "http://bioregistry.io/go.chebi:", - "http://bioregistry.io/go.chemical:", - "http://bioregistry.io/go.chemicals:", - "http://bioregistry.io/goche:", - "https://bioregistry.io/GOCHE:", - "https://bioregistry.io/go.chebi:", - "https://bioregistry.io/go.chemical:", - "https://bioregistry.io/go.chemicals:", - "https://bioregistry.io/goche:" - ] - }, - { + "pattern": "^[A-Z][a-z][0-9]+$", "prefix": "gold", "prefix_synonyms": [ "gold.meta" @@ -8560,6 +12628,7 @@ ] }, { + "pattern": "^(Gi|Gc)\\d+$", "prefix": "gold.genome", "uri_prefix": "http://www.genomesonline.org/cgi-bin/GOLD/GOLDCards.cgi?goldstamp=", "uri_prefix_synonyms": [ @@ -8575,6 +12644,7 @@ ] }, { + "pattern": "^[A-Z]{1,2}\\d{5}$", "prefix": "goldbook", "uri_prefix": "http://dx.doi.org/10.1351/goldbook.", "uri_prefix_synonyms": [ @@ -8595,6 +12665,7 @@ ] }, { + "pattern": "^[A-Z]{2,4}\\d+([A-Z])?([0-9])?$", "prefix": "google.patent", "prefix_synonyms": [ "patent" @@ -8617,6 +12688,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "gorel", "uri_prefix": "http://purl.obolibrary.org/obo/GOREL_", "uri_prefix_synonyms": [ @@ -8626,6 +12698,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "gpcrdb", "uri_prefix": "https://gpcrdb.org/protein/", "uri_prefix_synonyms": [ @@ -8656,6 +12729,7 @@ ] }, { + "pattern": "^GPM\\d+$", "prefix": "gpmdb", "uri_prefix": "http://gpmdb.thegpm.org/~/dblist_gpmnum/gpmnum=", "uri_prefix_synonyms": [ @@ -8691,6 +12765,7 @@ ] }, { + "pattern": "^GR\\:\\d+$", "prefix": "gramene.gene", "prefix_synonyms": [ "GR_GENE" @@ -8711,39 +12786,7 @@ ] }, { - "prefix": "GRO", - "prefix_synonyms": [ - "cpga", - "gro-cpga" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/GRO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/gramene.po:", - "http://bioregistry.io/GRO:", - "http://bioregistry.io/cpga:", - "http://bioregistry.io/gramene.growthstage:", - "http://bioregistry.io/gro-cpga:", - "http://identifiers.org/GRO/", - "http://identifiers.org/GRO:", - "http://identifiers.org/gro/GRO:", - "http://n2t.net/gramene.growthstage:", - "http://www.gramene.org/db/ontology/search?id=", - "http://www.gramene.org/db/ontology/search?id=GRO:", - "https://bio2rdf.org/gramene.po:", - "https://bioregistry.io/GRO:", - "https://bioregistry.io/cpga:", - "https://bioregistry.io/gramene.growthstage:", - "https://bioregistry.io/gro-cpga:", - "https://identifiers.org/GRO/", - "https://identifiers.org/GRO:", - "https://identifiers.org/gro/GRO:", - "https://n2t.net/gramene.growthstage:", - "https://purl.obolibrary.org/obo/GRO_", - "https://www.gramene.org/db/ontology/search?id=", - "https://www.gramene.org/db/ontology/search?id=GRO:" - ] - }, - { + "pattern": "^\\d+$", "prefix": "gramene.protein", "prefix_synonyms": [ "GR_PROTEIN" @@ -8766,6 +12809,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "gramene.qtl", "prefix_synonyms": [ "GR_QTL" @@ -8786,6 +12830,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "gramene.reference", "prefix_synonyms": [ "gramene.ref" @@ -8800,6 +12845,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "gramene.taxonomy", "uri_prefix": "https://archive.gramene.org/db/ontology/search?id=GR_tax:", "uri_prefix_synonyms": [ @@ -8817,6 +12863,7 @@ ] }, { + "pattern": "^(imp|gen)\\d{5}$", "prefix": "grassbase", "uri_prefix": "https://www.kew.org/data/grasses-db/www/", "uri_prefix_synonyms": [ @@ -8826,6 +12873,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "greengenes", "uri_prefix": "http://greengenes.lbl.gov/cgi-bin/show_one_record_v2.pl?prokMSA_id=", "uri_prefix_synonyms": [ @@ -8843,6 +12891,7 @@ ] }, { + "pattern": "^grid\\.[0-9]+\\.[a-f0-9]{1,2}$", "prefix": "grid", "uri_prefix": "https://www.grid.ac/institutes/", "uri_prefix_synonyms": [ @@ -8869,6 +12918,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "grin.taxonomy", "uri_prefix": "http://www.ars-grin.gov/cgi-bin/npgs/html/taxon.pl?", "uri_prefix_synonyms": [ @@ -8895,6 +12945,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "grsdb", "uri_prefix": "http://bioinformatics.ramapo.edu/GRSDB2/geneview.php?geneID=", "uri_prefix_synonyms": [ @@ -8912,6 +12963,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "gsfa", "prefix_synonyms": [ "FAO/WHO_standards" @@ -8926,25 +12978,7 @@ ] }, { - "prefix": "GSSO", - "uri_prefix": "http://purl.obolibrary.org/obo/GSSO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/GSSO:", - "http://bioregistry.io/gsso:", - "http://identifiers.org/GSSO/", - "http://identifiers.org/GSSO:", - "http://identifiers.org/gsso/GSSO:", - "http://www.ebi.ac.uk/ols/ontologies/gsso/terms?iri=http://purl.obolibrary.org/obo/GSSO_", - "https://bioregistry.io/GSSO:", - "https://bioregistry.io/gsso:", - "https://identifiers.org/GSSO/", - "https://identifiers.org/GSSO:", - "https://identifiers.org/gsso/GSSO:", - "https://purl.obolibrary.org/obo/GSSO_", - "https://www.ebi.ac.uk/ols/ontologies/gsso/terms?iri=http://purl.obolibrary.org/obo/GSSO_" - ] - }, - { + "pattern": "^\\w.+$", "prefix": "gtex", "uri_prefix": "https://www.gtexportal.org/home/gene/", "uri_prefix_synonyms": [ @@ -8974,6 +13008,7 @@ ] }, { + "pattern": "^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$", "prefix": "gudmap", "uri_prefix": "https://gudmap.org/id/", "uri_prefix_synonyms": [ @@ -8989,6 +13024,7 @@ ] }, { + "pattern": "^HGVM\\d+$", "prefix": "gwascentral.marker", "uri_prefix": "https://www.gwascentral.org/marker/", "uri_prefix_synonyms": [ @@ -9004,6 +13040,7 @@ ] }, { + "pattern": "^HGVPM\\d+$", "prefix": "gwascentral.phenotype", "uri_prefix": "https://www.gwascentral.org/phenotype/", "uri_prefix_synonyms": [ @@ -9019,6 +13056,7 @@ ] }, { + "pattern": "^HGVST\\d+$", "prefix": "gwascentral.study", "uri_prefix": "https://www.gwascentral.org/study/", "uri_prefix_synonyms": [ @@ -9038,6 +13076,7 @@ ] }, { + "pattern": "^[AEP]-\\w{4}-\\d+$", "prefix": "gxa.expt", "uri_prefix": "https://www.ebi.ac.uk/gxa/experiments/", "uri_prefix_synonyms": [ @@ -9055,6 +13094,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "gxa.gene", "uri_prefix": "https://www.ebi.ac.uk/gxa/genes/", "uri_prefix_synonyms": [ @@ -9069,17 +13109,6 @@ "https://n2t.net/gxa.gene:" ] }, - { - "prefix": "HABRONATTUS", - "uri_prefix": "http://purl.obolibrary.org/obo/HABRONATTUS_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/HABRONATTUS:", - "http://bioregistry.io/habronattus:", - "https://bioregistry.io/HABRONATTUS:", - "https://bioregistry.io/habronattus:", - "https://purl.obolibrary.org/obo/HABRONATTUS_" - ] - }, { "prefix": "hagr.genage", "uri_prefix": "http://genomics.senescence.info/genes/details.php?id=", @@ -9103,6 +13132,7 @@ ] }, { + "pattern": "^MF_\\d+$", "prefix": "hamap", "uri_prefix": "https://hamap.expasy.org/unirule/", "uri_prefix_synonyms": [ @@ -9124,34 +13154,7 @@ ] }, { - "prefix": "HANCESTRO", - "uri_prefix": "http://purl.obolibrary.org/obo/HANCESTRO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/HANCESTRO:", - "http://bioregistry.io/hancestro:", - "http://www.ebi.ac.uk/ancestro/ancestro_", - "http://www.ebi.ac.uk/ols/ontologies/hancestro/terms?iri=http://purl.obolibrary.org/obo/HANCESTRO_", - "https://bioregistry.io/HANCESTRO:", - "https://bioregistry.io/hancestro:", - "https://purl.obolibrary.org/obo/HANCESTRO_", - "https://www.ebi.ac.uk/ancestro/ancestro_", - "https://www.ebi.ac.uk/ols/ontologies/hancestro/terms?iri=http://purl.obolibrary.org/obo/HANCESTRO_" - ] - }, - { - "prefix": "HAO", - "uri_prefix": "http://purl.obolibrary.org/obo/HAO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/HAO:", - "http://bioregistry.io/hao:", - "http://www.ebi.ac.uk/ols/ontologies/hao/terms?iri=http://purl.obolibrary.org/obo/HAO_", - "https://bioregistry.io/HAO:", - "https://bioregistry.io/hao:", - "https://purl.obolibrary.org/obo/HAO_", - "https://www.ebi.ac.uk/ols/ontologies/hao/terms?iri=http://purl.obolibrary.org/obo/HAO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "hathitrust", "uri_prefix": "https://catalog.hathitrust.org/Record/", "uri_prefix_synonyms": [ @@ -9160,17 +13163,6 @@ "https://bioregistry.io/hathitrust:" ] }, - { - "prefix": "HBA", - "uri_prefix": "https://biopragmatics.github.io/providers/hba/", - "uri_prefix_synonyms": [ - "http://biopragmatics.github.io/providers/hba/", - "http://bioregistry.io/HBA:", - "http://bioregistry.io/hba:", - "https://bioregistry.io/HBA:", - "https://bioregistry.io/hba:" - ] - }, { "prefix": "hbvar", "uri_prefix": "http://globin.bx.psu.edu/cgi-bin/hbvar/query_vars3?mode=output&display_format=page&i=", @@ -9183,6 +13175,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hc.npn", "uri_prefix": "http://webprod.hc-sc.gc.ca/nhpid-bdipsn/ingredReq.do?id=", "uri_prefix_synonyms": [ @@ -9191,6 +13184,16 @@ "https://webprod.hc-sc.gc.ca/nhpid-bdipsn/ingredReq.do?id=" ] }, + { + "pattern": "^\\d+$", + "prefix": "hc.trial", + "uri_prefix": "https://health-products.canada.ca/ctdb-bdec/brand/?submissionNo=", + "uri_prefix_synonyms": [ + "http://bioregistry.io/hc.trial:", + "http://health-products.canada.ca/ctdb-bdec/brand/?submissionNo=", + "https://bioregistry.io/hc.trial:" + ] + }, { "prefix": "hcpcs", "uri_prefix": "http://purl.bioontology.org/ontology/HCPCS/", @@ -9201,6 +13204,7 @@ ] }, { + "pattern": "^M\\d{5}$", "prefix": "hcvdb", "uri_prefix": "https://euhcvdb.ibcp.fr/euHCVdb/do/displayHCVEntry?primaryAC=", "uri_prefix_synonyms": [ @@ -9220,6 +13224,7 @@ ] }, { + "pattern": "^\\d+/.+$", "prefix": "hdl", "prefix_synonyms": [ "handle" @@ -9234,6 +13239,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hdr", "uri_prefix": "http://research.nhgri.nih.gov/apps/homeodomain/web/index.cgi?mode=view&view=proteins&id=", "uri_prefix_synonyms": [ @@ -9253,17 +13259,7 @@ ] }, { - "prefix": "HEPRO", - "uri_prefix": "http://purl.obolibrary.org/obo/HEPRO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/HEPRO:", - "http://bioregistry.io/hepro:", - "https://bioregistry.io/HEPRO:", - "https://bioregistry.io/hepro:", - "https://purl.obolibrary.org/obo/HEPRO_" - ] - }, - { + "pattern": "^[A-Z_0-9]+$", "prefix": "hgmd", "uri_prefix": "http://www.hgmd.cf.ac.uk/ac/gene.php?gene=", "uri_prefix_synonyms": [ @@ -9279,6 +13275,7 @@ ] }, { + "pattern": "^\\d{1,5}$", "prefix": "hgnc", "uri_prefix": "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/", "uri_prefix_synonyms": [ @@ -9304,6 +13301,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hgnc.genegroup", "prefix_synonyms": [ "GFAM", @@ -9337,6 +13335,7 @@ ] }, { + "pattern": "^[A-Za-z-0-9_]+(\\@)?$", "prefix": "hgnc.symbol", "prefix_synonyms": [ "collagenmutdb", @@ -9396,6 +13395,7 @@ ] }, { + "pattern": "^HIX\\d{7}(\\.\\d+)?$", "prefix": "hinv.locus", "uri_prefix": "http://h-invitational.jp/hinv/spsoup/locus_view?hix_id=", "uri_prefix_synonyms": [ @@ -9411,6 +13411,7 @@ ] }, { + "pattern": "^HIP\\d{9}(\\.\\d+)?$", "prefix": "hinv.protein", "uri_prefix": "http://h-invitational.jp/hinv/protein/protein_view.cgi?hip_id=", "uri_prefix_synonyms": [ @@ -9426,6 +13427,7 @@ ] }, { + "pattern": "^HIT\\d{9}(\\.\\d+)?$", "prefix": "hinv.transcript", "uri_prefix": "http://h-invitational.jp/hinv/spsoup/transcript_view?hit_id=", "uri_prefix_synonyms": [ @@ -9450,6 +13452,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hl7.v2codesystem", "uri_prefix": "http://terminology.hl7.org/CodeSystem/v2-", "uri_prefix_synonyms": [ @@ -9459,6 +13462,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "hl7.v3codesystem", "uri_prefix": "https://terminology.hl7.org/CodeSystem-v3-", "uri_prefix_synonyms": [ @@ -9468,6 +13472,7 @@ ] }, { + "pattern": "^HMDB\\d+$", "prefix": "hmdb", "prefix_synonyms": [ "HMDB" @@ -9490,6 +13495,7 @@ ] }, { + "pattern": "^8\\d{4}$", "prefix": "hms.lincs.antibody", "uri_prefix": "https://lincs.hms.harvard.edu/db/antibodies/", "uri_prefix_synonyms": [ @@ -9499,6 +13505,7 @@ ] }, { + "pattern": "^5\\d{4}$", "prefix": "hms.lincs.cell", "uri_prefix": "https://lincs.hms.harvard.edu/db/cells/", "uri_prefix_synonyms": [ @@ -9508,6 +13515,7 @@ ] }, { + "pattern": "^1\\d{4}-\\d{3}$", "prefix": "hms.lincs.compound", "prefix_synonyms": [ "HMS-LINCS", @@ -9525,6 +13533,7 @@ ] }, { + "pattern": "^2\\d{4}$", "prefix": "hms.lincs.dataset", "uri_prefix": "https://lincs.hms.harvard.edu/db/datasets/", "uri_prefix_synonyms": [ @@ -9534,6 +13543,21 @@ ] }, { + "prefix": "hoelzel", + "prefix_synonyms": [ + "hölzel" + ], + "uri_prefix": "https://www.hoelzel-biotech.com/de/catalogsearch/result/?q=", + "uri_prefix_synonyms": [ + "http://bioregistry.io/hoelzel:", + "http://bioregistry.io/hölzel:", + "http://www.hoelzel-biotech.com/de/catalogsearch/result/?q=", + "https://bioregistry.io/hoelzel:", + "https://bioregistry.io/hölzel:" + ] + }, + { + "pattern": "^\\d{7}$", "prefix": "hog", "uri_prefix": "https://biopragmatics.github.io/providers/hog/", "uri_prefix_synonyms": [ @@ -9543,6 +13567,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "hogenom", "uri_prefix": "http://pbil.univ-lyon1.fr/cgi-bin/view-tree.pl?db=HOGENOM5&query=", "uri_prefix_synonyms": [ @@ -9562,6 +13587,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "hoip", "uri_prefix": "http://purl.bioontology.org/ontology/HOIP/HOIP_", "uri_prefix_synonyms": [ @@ -9571,19 +13597,7 @@ ] }, { - "prefix": "HOM", - "uri_prefix": "http://purl.obolibrary.org/obo/HOM_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/HOM:", - "http://bioregistry.io/hom:", - "http://www.ebi.ac.uk/ols/ontologies/hom/terms?iri=http://purl.obolibrary.org/obo/HOM_", - "https://bioregistry.io/HOM:", - "https://bioregistry.io/hom:", - "https://purl.obolibrary.org/obo/HOM_", - "https://www.ebi.ac.uk/ols/ontologies/hom/terms?iri=http://purl.obolibrary.org/obo/HOM_" - ] - }, - { + "pattern": "^SEQF\\d+$", "prefix": "homd.seq", "uri_prefix": "http://www.homd.org/modules.php?op=modload&name=GenomeList&file=index&link=detailinfo&seqid=", "uri_prefix_synonyms": [ @@ -9601,6 +13615,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "homd.taxon", "uri_prefix": "http://www.homd.org/modules.php?op=modload&name=HOMD&view=dynamic&oraltaxonid=", "uri_prefix_synonyms": [ @@ -9618,6 +13633,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "homologene", "uri_prefix": "https://www.ncbi.nlm.nih.gov/homologene/", "uri_prefix_synonyms": [ @@ -9648,6 +13664,7 @@ ] }, { + "pattern": "^HBG\\d+$", "prefix": "hovergen", "uri_prefix": "https://identifiers.org/hovergen:", "uri_prefix_synonyms": [ @@ -9663,40 +13680,7 @@ ] }, { - "prefix": "HP", - "prefix_synonyms": [ - "hpo" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/HP_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/HP:", - "http://bioregistry.io/hp:", - "http://bioregistry.io/hpo:", - "http://compbio.charite.de/hpoweb/showterm?id=HP:", - "http://hpo.jax.org/app/browse/term/", - "http://hpo.jax.org/app/browse/term/HP:", - "http://human-phenotype-ontology.org/", - "http://identifiers.org/HP/", - "http://identifiers.org/HP:", - "http://identifiers.org/hp/HP:", - "http://n2t.net/hp:", - "http://www.ebi.ac.uk/ols/ontologies/hp/terms?iri=http://purl.obolibrary.org/obo/HP_", - "https://bioregistry.io/HP:", - "https://bioregistry.io/hp:", - "https://bioregistry.io/hpo:", - "https://compbio.charite.de/hpoweb/showterm?id=HP:", - "https://hpo.jax.org/app/browse/term/", - "https://hpo.jax.org/app/browse/term/HP:", - "https://human-phenotype-ontology.org/", - "https://identifiers.org/HP/", - "https://identifiers.org/HP:", - "https://identifiers.org/hp/HP:", - "https://n2t.net/hp:", - "https://purl.obolibrary.org/obo/HP_", - "https://www.ebi.ac.uk/ols/ontologies/hp/terms?iri=http://purl.obolibrary.org/obo/HP_" - ] - }, - { + "pattern": "^ENSG\\d{11}$", "prefix": "hpa", "uri_prefix": "http://www.proteinatlas.org/", "uri_prefix_synonyms": [ @@ -9718,6 +13702,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hpath", "prefix_synonyms": [ "MC" @@ -9732,6 +13717,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hpm.peptide", "uri_prefix": "http://www.humanproteomemap.org/spectrum.php?pep_id=", "uri_prefix_synonyms": [ @@ -9747,6 +13733,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hpm.protein", "uri_prefix": "http://www.humanproteomemap.org/protein.php?hpm_id=", "uri_prefix_synonyms": [ @@ -9762,6 +13749,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "hprd", "uri_prefix": "http://www.hprd.org/protein/", "uri_prefix_synonyms": [ @@ -9779,6 +13767,7 @@ ] }, { + "pattern": "^[A-Z]{2,6}(e|i)[A-Za-z0-9]{3}-[A-Z]{1,2}(-[A-Za-z0-9]{1,2})?$", "prefix": "hpscreg", "uri_prefix": "https://hpscreg.eu/cell-line/", "uri_prefix_synonyms": [ @@ -9794,19 +13783,7 @@ ] }, { - "prefix": "HsapDv", - "uri_prefix": "http://purl.obolibrary.org/obo/HsapDv_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/HsapDv:", - "http://bioregistry.io/hsapdv:", - "http://www.ebi.ac.uk/ols/ontologies/hsapdv/terms?iri=http://purl.obolibrary.org/obo/HsapDv_", - "https://bioregistry.io/HsapDv:", - "https://bioregistry.io/hsapdv:", - "https://purl.obolibrary.org/obo/HsapDv_", - "https://www.ebi.ac.uk/ols/ontologies/hsapdv/terms?iri=http://purl.obolibrary.org/obo/HsapDv_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "hsdb", "uri_prefix": "https://pubchem.ncbi.nlm.nih.gov/source/hsdb/", "uri_prefix_synonyms": [ @@ -9816,49 +13793,23 @@ ] }, { - "prefix": "HSO", - "uri_prefix": "http://purl.obolibrary.org/obo/HSO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/HSO:", - "http://bioregistry.io/hso:", - "http://purl.obolibrary.org/obo/hso.owl#HSO_", - "http://www.ebi.ac.uk/ols/ontologies/hso/terms?iri=http://purl.obolibrary.org/obo/HSO_", - "https://bioregistry.io/HSO:", - "https://bioregistry.io/hso:", - "https://purl.obolibrary.org/obo/HSO_", - "https://purl.obolibrary.org/obo/hso.owl#HSO_", - "https://www.ebi.ac.uk/ols/ontologies/hso/terms?iri=http://purl.obolibrary.org/obo/HSO_" - ] - }, - { + "pattern": "^\\w{4}$", "prefix": "hssp", "uri_prefix": "https://identifiers.org/hssp:", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/hssp:", - "http://bioregistry.io/hssp:", - "http://identifiers.org/hssp/", - "http://identifiers.org/hssp:", - "http://n2t.net/hssp:", - "https://bio2rdf.org/hssp:", - "https://bioregistry.io/hssp:", - "https://identifiers.org/hssp/", - "https://n2t.net/hssp:" - ] - }, - { - "prefix": "HTN", - "uri_prefix": "http://purl.obolibrary.org/obo/HTN_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/HTN:", - "http://bioregistry.io/htn:", - "http://www.ebi.ac.uk/ols/ontologies/htn/terms?iri=http://purl.obolibrary.org/obo/HTN_", - "https://bioregistry.io/HTN:", - "https://bioregistry.io/htn:", - "https://purl.obolibrary.org/obo/HTN_", - "https://www.ebi.ac.uk/ols/ontologies/htn/terms?iri=http://purl.obolibrary.org/obo/HTN_" + "uri_prefix_synonyms": [ + "http://bio2rdf.org/hssp:", + "http://bioregistry.io/hssp:", + "http://identifiers.org/hssp/", + "http://identifiers.org/hssp:", + "http://n2t.net/hssp:", + "https://bio2rdf.org/hssp:", + "https://bioregistry.io/hssp:", + "https://identifiers.org/hssp/", + "https://n2t.net/hssp:" ] }, { + "pattern": "^KIAA\\d{4}$", "prefix": "huge", "uri_prefix": "https://www.kazusa.or.jp/huge/gfpage/", "uri_prefix_synonyms": [ @@ -9878,71 +13829,7 @@ ] }, { - "prefix": "IAO", - "uri_prefix": "http://purl.obolibrary.org/obo/IAO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/IAO:", - "http://bioregistry.io/iao:", - "http://identifiers.org/iao/", - "http://identifiers.org/iao:", - "http://n2t.net/iao:", - "http://www.ebi.ac.uk/ols/ontologies/iao/terms?iri=http://purl.obolibrary.org/obo/IAO_", - "http://www.semanticweb.org/ontologies/2011/9/Ontology1317751904226.owl#IAO_", - "https://bioregistry.io/IAO:", - "https://bioregistry.io/iao:", - "https://identifiers.org/iao/", - "https://identifiers.org/iao:", - "https://n2t.net/iao:", - "https://purl.obolibrary.org/obo/IAO_", - "https://www.ebi.ac.uk/ols/ontologies/iao/terms?iri=http://purl.obolibrary.org/obo/IAO_", - "https://www.semanticweb.org/ontologies/2011/9/Ontology1317751904226.owl#IAO_" - ] - }, - { - "prefix": "ICD10WHO", - "prefix_synonyms": [ - "ICD", - "ICD-10", - "ICD10" - ], - "uri_prefix": "https://icd.who.int/browse10/2019/en#/", - "uri_prefix_synonyms": [ - "http://apps.who.int/classifications/icd10/browse/2010/en#/", - "http://bio2rdf.org/icd:", - "http://bioregistry.io/ICD-10:", - "http://bioregistry.io/ICD10:", - "http://bioregistry.io/ICD10WHO:", - "http://bioregistry.io/ICD:", - "http://bioregistry.io/icd10:", - "http://icd.who.int/browse10/2008/en#/", - "http://icd.who.int/browse10/2010/en#/", - "http://icd.who.int/browse10/2014/en#/", - "http://icd.who.int/browse10/2015/en#/", - "http://icd.who.int/browse10/2016/en#/", - "http://icd.who.int/browse10/2019/en#/", - "http://icdcodelookup.com/icd-10/codes/", - "http://identifiers.org/icd/", - "http://identifiers.org/icd:", - "http://n2t.net/icd:", - "https://apps.who.int/classifications/icd10/browse/2010/en#/", - "https://bio2rdf.org/icd:", - "https://bioregistry.io/ICD-10:", - "https://bioregistry.io/ICD10:", - "https://bioregistry.io/ICD10WHO:", - "https://bioregistry.io/ICD:", - "https://bioregistry.io/icd10:", - "https://icd.who.int/browse10/2008/en#/", - "https://icd.who.int/browse10/2010/en#/", - "https://icd.who.int/browse10/2014/en#/", - "https://icd.who.int/browse10/2015/en#/", - "https://icd.who.int/browse10/2016/en#/", - "https://icdcodelookup.com/icd-10/codes/", - "https://identifiers.org/icd/", - "https://identifiers.org/icd:", - "https://n2t.net/icd:" - ] - }, - { + "pattern": "^([A-Z][0-9][0-9AB]((-[A-Z][0-9][0-9AB])|(\\.[0-9A-KXZ]([0-9A-EXYZ]([0-9A-HX][0-59A-HJKMNP-S]?)?)?)?))$", "prefix": "icd10cm", "prefix_synonyms": [ "ICD10CM" @@ -9968,6 +13855,7 @@ ] }, { + "pattern": "^[1-9]\\d*$", "prefix": "icd11", "prefix_synonyms": [ "ICD-11" @@ -9984,6 +13872,7 @@ ] }, { + "pattern": "^([\\dA-Z]\\d{2}(\\.\\d{1,3}|))|(\\d{2}(\\.\\d{1,2}|))$", "prefix": "icd9cm", "prefix_synonyms": [ "IC9CM", @@ -10010,6 +13899,7 @@ ] }, { + "pattern": "^\\d{6}$", "prefix": "icdc", "uri_prefix": "https://caninecommons.cancer.gov/#/study/", "uri_prefix_synonyms": [ @@ -10023,6 +13913,7 @@ ] }, { + "pattern": "^[8-9]\\d{3}(/[0-3])?$", "prefix": "icdo", "prefix_synonyms": [ "ICD-O", @@ -10042,6 +13933,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "iceberg.element", "prefix_synonyms": [ "iceberg.ice" @@ -10064,6 +13956,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "iceberg.family", "uri_prefix": "https://bioinfo-mml.sjtu.edu.cn/ICEberg2/browse_result.php?type=fam&fam_id=", "uri_prefix_synonyms": [ @@ -10081,19 +13974,7 @@ ] }, { - "prefix": "ICEO", - "uri_prefix": "http://purl.obolibrary.org/obo/ICEO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ICEO:", - "http://bioregistry.io/iceo:", - "http://www.ebi.ac.uk/ols/ontologies/iceo/terms?iri=http://purl.obolibrary.org/obo/ICEO_", - "https://bioregistry.io/ICEO:", - "https://bioregistry.io/iceo:", - "https://purl.obolibrary.org/obo/ICEO_", - "https://www.ebi.ac.uk/ols/ontologies/iceo/terms?iri=http://purl.obolibrary.org/obo/ICEO_" - ] - }, - { + "pattern": "^\\d{7}$", "prefix": "icepo", "uri_prefix": "https://biopragmatics.github.io/providers/icepo/", "uri_prefix_synonyms": [ @@ -10103,6 +13984,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "icf", "uri_prefix": "http://id.who.int/icd/entity/", "uri_prefix_synonyms": [ @@ -10112,6 +13994,7 @@ ] }, { + "pattern": "^\\w{3}\\d+$", "prefix": "iclc", "uri_prefix": "http://www.iclc.it/details/det_list.php?line_id=", "uri_prefix_synonyms": [ @@ -10130,19 +14013,7 @@ ] }, { - "prefix": "ICO", - "uri_prefix": "http://purl.obolibrary.org/obo/ICO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ICO:", - "http://bioregistry.io/ico:", - "http://www.ebi.ac.uk/ols/ontologies/ico/terms?iri=http://purl.obolibrary.org/obo/ICO_", - "https://bioregistry.io/ICO:", - "https://bioregistry.io/ico:", - "https://purl.obolibrary.org/obo/ICO_", - "https://www.ebi.ac.uk/ols/ontologies/ico/terms?iri=http://purl.obolibrary.org/obo/ICO_" - ] - }, - { + "pattern": "^IID\\d+$", "prefix": "ideal", "uri_prefix": "http://idp1.force.cs.is.nagoya-u.ac.jp/IDEAL/ideal.php?id=", "uri_prefix_synonyms": [ @@ -10162,31 +14033,7 @@ ] }, { - "prefix": "IDO", - "uri_prefix": "http://purl.obolibrary.org/obo/IDO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/IDO:", - "http://bioregistry.io/ido:", - "http://identifiers.org/ido/", - "http://identifiers.org/ido:", - "http://n2t.net/ido:", - "http://purl.obolibrary.org/obo/ido.owl/IDO_", - "http://www.ebi.ac.uk/ols/ontologies/ido/terms?iri=http://purl.obolibrary.org/obo/IDO_", - "http://www.ebi.ac.uk/ols/ontologies/ido/terms?obo_id=IDO:", - "http://www.ebi.ac.uk/ols4/ontologies/ido/terms?obo_id=IDO:", - "https://bioregistry.io/IDO:", - "https://bioregistry.io/ido:", - "https://identifiers.org/ido/", - "https://identifiers.org/ido:", - "https://n2t.net/ido:", - "https://purl.obolibrary.org/obo/IDO_", - "https://purl.obolibrary.org/obo/ido.owl/IDO_", - "https://www.ebi.ac.uk/ols/ontologies/ido/terms?iri=http://purl.obolibrary.org/obo/IDO_", - "https://www.ebi.ac.uk/ols/ontologies/ido/terms?obo_id=IDO:", - "https://www.ebi.ac.uk/ols4/ontologies/ido/terms?obo_id=IDO:" - ] - }, - { + "pattern": "^\\d{7}$", "prefix": "idocovid19", "uri_prefix": "http://purl.obolibrary.org/obo/COVIDO_", "uri_prefix_synonyms": [ @@ -10198,6 +14045,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "idoden", "uri_prefix": "http://purl.bioontology.org/ontology/IDODEN_", "uri_prefix_synonyms": [ @@ -10207,6 +14055,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "idog", "uri_prefix": "https://ngdc.cncb.ac.cn/idog/breed/getBreedDetail.action?breedId=", "uri_prefix_synonyms": [ @@ -10216,19 +14065,7 @@ ] }, { - "prefix": "IDOMAL", - "uri_prefix": "http://purl.obolibrary.org/obo/IDOMAL_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/IDOMAL:", - "http://bioregistry.io/idomal:", - "http://www.ebi.ac.uk/ols/ontologies/idomal/terms?iri=http://purl.obolibrary.org/obo/IDOMAL_", - "https://bioregistry.io/IDOMAL:", - "https://bioregistry.io/idomal:", - "https://purl.obolibrary.org/obo/IDOMAL_", - "https://www.ebi.ac.uk/ols/ontologies/idomal/terms?iri=http://purl.obolibrary.org/obo/IDOMAL_" - ] - }, - { + "pattern": "^[0-9a-zA-Z]+$", "prefix": "idoo", "uri_prefix": "http://registry.api.hq.identifiers.org/semanticApi/getRegistryOntology#", "uri_prefix_synonyms": [ @@ -10244,6 +14081,7 @@ ] }, { + "pattern": "^[A-Za-z]+$", "prefix": "idot", "uri_prefix": "https://biomodels.net/vocab/idot.rdf#", "uri_prefix_synonyms": [ @@ -10259,6 +14097,7 @@ ] }, { + "pattern": "^\\d{5}$", "prefix": "idpo", "uri_prefix": "https://www.disprot.org/idpo/IDPO:", "uri_prefix_synonyms": [ @@ -10268,6 +14107,7 @@ ] }, { + "pattern": "^[0-9]{4}$", "prefix": "idr", "uri_prefix": "https://idr.openmicroscopy.org/search/?query=Name:idr", "uri_prefix_synonyms": [ @@ -10281,6 +14121,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "iedb", "uri_prefix": "https://www.iedb.org/reference/", "uri_prefix_synonyms": [ @@ -10297,21 +14138,6 @@ "https://www.iedb.org/epId/" ] }, - { - "prefix": "IEV", - "uri_prefix": "http://purl.obolibrary.org/obo/IEV_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/iev:", - "http://bioregistry.io/IEV:", - "http://bioregistry.io/iev:", - "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IEV&id=", - "https://bio2rdf.org/iev:", - "https://bioregistry.io/IEV:", - "https://bioregistry.io/iev:", - "https://purl.obolibrary.org/obo/IEV_", - "https://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IEV&id=" - ] - }, { "prefix": "igrhcellid", "uri_prefix": "http://igrcid.ibms.sinica.edu.tw/cgi-bin/cell_line_view.cgi?cl_name=", @@ -10322,6 +14148,7 @@ ] }, { + "pattern": "^[A-Za-z]{2,4}[A-Za-z0-9.-]{1,71}$", "prefix": "igsn", "uri_prefix": "http://igsn.org/", "uri_prefix_synonyms": [ @@ -10356,6 +14183,7 @@ ] }, { + "pattern": "^\\d+(-\\d+)?$", "prefix": "imex", "uri_prefix": "https://www.ebi.ac.uk/intact/imex/main.xhtml?query=IM-", "uri_prefix_synonyms": [ @@ -10381,6 +14209,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "img.gene", "uri_prefix": "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=GeneDetail&gene_oid=", "uri_prefix_synonyms": [ @@ -10398,6 +14227,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "img.taxon", "uri_prefix": "http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&taxon_oid=", "uri_prefix_synonyms": [ @@ -10417,6 +14247,7 @@ ] }, { + "pattern": "^[A-Z0-9*:]+$", "prefix": "imgt.hla", "prefix_synonyms": [ "IPD-IMGT/HLA" @@ -10441,6 +14272,7 @@ ] }, { + "pattern": "^M\\d+$", "prefix": "imgt.ligm", "uri_prefix": "http://www.imgt.org/ligmdb/view?id=", "uri_prefix_synonyms": [ @@ -10469,21 +14301,40 @@ ] }, { - "prefix": "IMR", - "uri_prefix": "http://purl.obolibrary.org/obo/IMR_", + "pattern": "^\\d+$", + "prefix": "imsr.apb", + "uri_prefix": "https://pb.apf.edu.au/phenbank/strain.html?id=", "uri_prefix_synonyms": [ - "http://bio2rdf.org/imr:", - "http://bioregistry.io/IMR:", - "http://bioregistry.io/imr:", - "http://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IMR&id=", - "https://bio2rdf.org/imr:", - "https://bioregistry.io/IMR:", - "https://bioregistry.io/imr:", - "https://purl.obolibrary.org/obo/IMR_", - "https://www.inoh.org/ontology-viewer/cgi-bin/InohOVAttr.php?type=IMR&id=" + "http://bioregistry.io/imsr.apb:", + "http://pb.apf.edu.au/phenbank/strain.html?id=", + "http://scicrunch.org/resolver/RRID:IMSR_APB_", + "https://bioregistry.io/imsr.apb:", + "https://scicrunch.org/resolver/RRID:IMSR_APB_" + ] + }, + { + "pattern": "^\\d+$", + "prefix": "imsr_em", + "uri_prefix": "https://www.infrafrontier.eu/emma/strain-search/straindetails/?q=", + "uri_prefix_synonyms": [ + "http://bioregistry.io/imsr_em:", + "http://scicrunch.org/resolver/RRID:IMSR_EM_", + "http://www.infrafrontier.eu/emma/strain-search/straindetails/?q=", + "https://bioregistry.io/imsr_em:", + "https://scicrunch.org/resolver/RRID:IMSR_EM_" ] }, { + "prefix": "imsr_tac", + "uri_prefix": "https://scicrunch.org/resolver/RRID:IMSR_TAC_", + "uri_prefix_synonyms": [ + "http://bioregistry.io/imsr_tac:", + "http://scicrunch.org/resolver/RRID:IMSR_TAC_", + "https://bioregistry.io/imsr_tac:" + ] + }, + { + "pattern": "^[1-9]\\d*$", "prefix": "inaturalist.observation", "uri_prefix": "https://www.inaturalist.org/observations/", "uri_prefix_synonyms": [ @@ -10493,6 +14344,7 @@ ] }, { + "pattern": "^[1-9]\\d*$", "prefix": "inaturalist.place", "uri_prefix": "https://www.inaturalist.org/places/", "uri_prefix_synonyms": [ @@ -10502,15 +14354,19 @@ ] }, { + "pattern": "^[1-9]\\d{0,6}$", "prefix": "inaturalist.taxon", "uri_prefix": "https://www.inaturalist.org/taxa/", "uri_prefix_synonyms": [ "http://bioregistry.io/inaturalist.taxon:", + "http://inaturalist.org/taxa/", "http://www.inaturalist.org/taxa/", - "https://bioregistry.io/inaturalist.taxon:" + "https://bioregistry.io/inaturalist.taxon:", + "https://inaturalist.org/taxa/" ] }, { + "pattern": "^[1-9]\\d*$", "prefix": "inaturalist.user", "uri_prefix": "https://www.inaturalist.org/users/", "uri_prefix_synonyms": [ @@ -10520,6 +14376,7 @@ ] }, { + "pattern": "^InChI\\=1S?\\/[A-Za-z0-9\\.]+(\\+[0-9]+)?(\\/[cnpqbtmsih][A-Za-z0-9\\-\\+\\(\\)\\,\\/\\?\\;\\.]+)*$", "prefix": "inchi", "uri_prefix": "http://www.chemspider.com/", "uri_prefix_synonyms": [ @@ -10543,6 +14400,7 @@ ] }, { + "pattern": "^[A-Z]{14}\\-[A-Z]{10}(\\-[A-Z])$", "prefix": "inchikey", "uri_prefix": "http://www.chemspider.com/inchikey=", "uri_prefix_synonyms": [ @@ -10585,19 +14443,7 @@ ] }, { - "prefix": "INO", - "uri_prefix": "http://purl.obolibrary.org/obo/INO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/INO:", - "http://bioregistry.io/ino:", - "http://www.ebi.ac.uk/ols/ontologies/ino/terms?iri=http://purl.obolibrary.org/obo/INO_", - "https://bioregistry.io/INO:", - "https://bioregistry.io/ino:", - "https://purl.obolibrary.org/obo/INO_", - "https://www.ebi.ac.uk/ols/ontologies/ino/terms?iri=http://purl.obolibrary.org/obo/INO_" - ] - }, - { + "pattern": "^([A-Z]\\d{5}|[A-Z]{2}\\d{6}|[A-Z]{4,6}\\d{8,10}|[A-J][A-Z]{2}\\d{5})(\\.\\d+)?$", "prefix": "insdc", "prefix_synonyms": [ "nucleotide" @@ -10625,23 +14471,51 @@ ] }, { + "pattern": "^(E|D|S)RR[0-9]{6,}$", + "prefix": "insdc.run", + "prefix_synonyms": [ + "ena", + "ena.embl" + ], + "uri_prefix": "https://www.ebi.ac.uk/ena/browser/view/", + "uri_prefix_synonyms": [ + "http://bio2rdf.org/ena:", + "http://bioregistry.io/ena.embl:", + "http://bioregistry.io/ena:", + "http://bioregistry.io/insdc.run:", + "http://identifiers.org/ena.embl/", + "http://identifiers.org/ena.embl:", + "http://n2t.net/ena.embl:", + "http://www.ebi.ac.uk/ena/browser/view/", + "https://bio2rdf.org/ena:", + "https://bioregistry.io/ena.embl:", + "https://bioregistry.io/ena:", + "https://bioregistry.io/insdc.run:", + "https://identifiers.org/ena.embl/", + "https://identifiers.org/ena.embl:", + "https://n2t.net/ena.embl:" + ] + }, + { + "pattern": "^[SED]R[APRSXZ]\\d+$", "prefix": "insdc.sra", "uri_prefix": "https://www.ncbi.nlm.nih.gov/sra/", "uri_prefix_synonyms": [ "http://bioregistry.io/insdc.sra:", + "http://ddbj.nig.ac.jp/resource/sra-experiment/", "http://identifiers.org/insdc.sra/", "http://identifiers.org/insdc.sra:", "http://n2t.net/insdc.sra:", - "http://trace.ddbj.nig.ac.jp/DRASearch/experiment?acc=", "http://www.ncbi.nlm.nih.gov/sra/", "https://bioregistry.io/insdc.sra:", + "https://ddbj.nig.ac.jp/resource/sra-experiment/", "https://identifiers.org/insdc.sra/", "https://identifiers.org/insdc.sra:", - "https://n2t.net/insdc.sra:", - "https://trace.ddbj.nig.ac.jp/DRASearch/experiment?acc=" + "https://n2t.net/insdc.sra:" ] }, { + "pattern": "^EBI\\-[0-9]+$", "prefix": "intact", "uri_prefix": "https://www.ebi.ac.uk/intact/interaction/", "uri_prefix_synonyms": [ @@ -10661,6 +14535,7 @@ ] }, { + "pattern": "^EBI\\-[0-9]+$", "prefix": "intact.molecule", "uri_prefix": "https://www.ebi.ac.uk/intact/search?query=", "uri_prefix_synonyms": [ @@ -10688,55 +14563,23 @@ "https://www.interfil.org/details.php?id=" ] }, - { - "prefix": "interlex", - "prefix_synonyms": [ - "ILX" - ], - "uri_prefix": "https://scicrunch.org/scicrunch/interlex/view/ilx_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ILX:", - "http://bioregistry.io/interlex:", - "http://identifiers.org/ilx/", - "http://identifiers.org/ilx:", - "http://scicrunch.org/scicrunch/interlex/view/ilx_", - "https://bioregistry.io/ILX:", - "https://bioregistry.io/interlex:", - "https://identifiers.org/ilx/", - "https://identifiers.org/ilx:" - ] - }, - { - "prefix": "IPR", - "prefix_synonyms": [ - "IP", - "InterPro" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/IPR_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/interpro:", - "http://bioregistry.io/IP:", - "http://bioregistry.io/IPR:", - "http://bioregistry.io/InterPro:", - "http://bioregistry.io/interpro:", - "http://identifiers.org/interpro/", - "http://identifiers.org/interpro:", - "http://interpro.bio2rdf.org/describe/?url=http://bio2rdf.org/interpro:", - "http://n2t.net/interpro:", - "http://www.ebi.ac.uk/interpro/IEntry?ac=", - "http://www.ebi.ac.uk/interpro/entry/", - "https://bio2rdf.org/interpro:", - "https://bioregistry.io/IP:", - "https://bioregistry.io/IPR:", - "https://bioregistry.io/InterPro:", - "https://bioregistry.io/interpro:", - "https://identifiers.org/interpro/", - "https://identifiers.org/interpro:", - "https://interpro.bio2rdf.org/describe/?url=http://bio2rdf.org/interpro:", - "https://n2t.net/interpro:", - "https://purl.obolibrary.org/obo/IPR_", - "https://www.ebi.ac.uk/interpro/IEntry?ac=", - "https://www.ebi.ac.uk/interpro/entry/" + { + "pattern": "^[0-9]+$", + "prefix": "interlex", + "prefix_synonyms": [ + "ILX" + ], + "uri_prefix": "https://scicrunch.org/scicrunch/interlex/view/ilx_", + "uri_prefix_synonyms": [ + "http://bioregistry.io/ILX:", + "http://bioregistry.io/interlex:", + "http://identifiers.org/ilx/", + "http://identifiers.org/ilx:", + "http://scicrunch.org/scicrunch/interlex/view/ilx_", + "https://bioregistry.io/ILX:", + "https://bioregistry.io/interlex:", + "https://identifiers.org/ilx/", + "https://identifiers.org/ilx:" ] }, { @@ -10749,6 +14592,7 @@ ] }, { + "pattern": "^\\w+(\\_)?\\d+(\\.\\d+)?$", "prefix": "ird.segment", "uri_prefix": "http://www.fludb.org/brc/fluSegmentDetails.do?ncbiGenomicAccession=", "uri_prefix_synonyms": [ @@ -10766,6 +14610,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "irefweb", "uri_prefix": "http://wodaklab.org/iRefWeb/interaction/show/", "uri_prefix_synonyms": [ @@ -10794,6 +14639,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "iro", "uri_prefix": "https://legacy.vectorbase.org/ontology-browser?cv=MIRO&t=IRO:", "uri_prefix_synonyms": [ @@ -10803,6 +14649,7 @@ ] }, { + "pattern": "^(ISBN)?(-13|-10)?[:]?[ ]?(\\d{2,3}[ -]?)?\\d{1,5}[ -]?\\d{1,7}[ -]?\\d{1,6}[ -]?(\\d|X)$", "prefix": "isbn", "prefix_synonyms": [ "ISBN-10", @@ -10834,6 +14681,7 @@ ] }, { + "pattern": "^IS\\w+(\\-\\d)?$", "prefix": "isfinder", "uri_prefix": "https://www-is.biotoul.fr/scripts/ficheIS.php?name=", "uri_prefix_synonyms": [ @@ -10853,6 +14701,7 @@ ] }, { + "pattern": "^[0-9]{15}[0-9X]{1}$", "prefix": "isni", "uri_prefix": "http://www.isni.org/isni/", "uri_prefix_synonyms": [ @@ -10877,6 +14726,7 @@ ] }, { + "pattern": "^ISRCTN\\d+$", "prefix": "isrctn", "uri_prefix": "https://www.isrctn.com/", "uri_prefix_synonyms": [ @@ -10888,6 +14738,7 @@ ] }, { + "pattern": "^\\d{4}-\\d{3}[\\dX]$", "prefix": "issn", "uri_prefix": "https://portal.issn.org/resource/ISSN/", "uri_prefix_synonyms": [ @@ -10903,6 +14754,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "itis", "uri_prefix": "https://www.itis.gov/servlet/SingleRpt/SingleRpt?search_topic=TSN&search_value=", "uri_prefix_synonyms": [ @@ -10912,6 +14764,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ito", "uri_prefix": "https://bioportal.bioontology.org/ontologies/ITO/?p=classes&conceptid=https://identifiers.org/ito:ITO_", "uri_prefix_synonyms": [ @@ -10929,6 +14782,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "iuphar.family", "prefix_synonyms": [ "IUPHARfam" @@ -10953,6 +14807,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "iuphar.ligand", "prefix_synonyms": [ "IUPHAR_LIGAND", @@ -10976,6 +14831,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "iuphar.receptor", "prefix_synonyms": [ "IUPHAR_GPCR", @@ -11010,17 +14866,21 @@ ] }, { + "pattern": "^\\d{6}$", "prefix": "jax", "uri_prefix": "https://www.jax.org/strain/", "uri_prefix_synonyms": [ "http://bioregistry.io/jax:", "http://jaxmice.jax.org/strain/", + "http://scicrunch.org/resolver/RRID:IMSR_JAX_", "http://www.jax.org/strain/", "https://bioregistry.io/jax:", - "https://jaxmice.jax.org/strain/" + "https://jaxmice.jax.org/strain/", + "https://scicrunch.org/resolver/RRID:IMSR_JAX_" ] }, { + "pattern": "^\\d+$", "prefix": "jaxmice", "uri_prefix": "https://identifiers.org/jaxmice:", "uri_prefix_synonyms": [ @@ -11034,6 +14894,7 @@ ] }, { + "pattern": "^JCGG-STR\\d{6}$", "prefix": "jcggdb", "uri_prefix": "http://jcggdb.jp/idb/jcggdb/", "uri_prefix_synonyms": [ @@ -11049,6 +14910,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "jcm", "uri_prefix": "http://www.jcm.riken.go.jp/cgi-bin/jcm/jcm_number?JCM=", "uri_prefix_synonyms": [ @@ -11066,6 +14928,7 @@ ] }, { + "pattern": "^JCRB\\d+$", "prefix": "jcrb", "uri_prefix": "https://cellbank.nibiohn.go.jp/~cellbank/en/search_res_det.cgi?RNO=", "uri_prefix_synonyms": [ @@ -11077,6 +14940,7 @@ ] }, { + "pattern": "^J\\d{1,3}(\\.\\d{3})?(\\.\\d{1,3})?[A-Za-z]$", "prefix": "jcsd", "uri_prefix": "http://jglobal.jst.go.jp/en/redirect?Nikkaji_No=", "uri_prefix_synonyms": [ @@ -11096,6 +14960,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "jgi.proposal", "uri_prefix": "https://genome.jgi.doe.gov/portal/lookup?keyName=proposalId&groupOnly=1&app=Info&keyValue=", "uri_prefix_synonyms": [ @@ -11105,6 +14970,7 @@ ] }, { + "pattern": "^jRCT\\w?\\d+$", "prefix": "jrct", "uri_prefix": "https://jrct.niph.go.jp/en-latest-detail/", "uri_prefix_synonyms": [ @@ -11116,6 +14982,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "jstor", "uri_prefix": "http://www.jstor.org/stable/", "uri_prefix_synonyms": [ @@ -11131,6 +14998,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "jws", "uri_prefix": "https://jjj.bio.vu.nl/models/", "uri_prefix_synonyms": [ @@ -11152,6 +15020,7 @@ ] }, { + "pattern": "^[0-9a-zA-Z\\-]+\\/[0-9a-zA-Z\\-]+$", "prefix": "kaggle", "uri_prefix": "https://www.kaggle.com/", "uri_prefix_synonyms": [ @@ -11178,6 +15047,7 @@ ] }, { + "pattern": "^([CHDEGTMKR]\\d+)|(\\w+:[\\w\\d\\.-]*)|([a-z]{3,5})|(\\w{2,4}\\d{5})$", "prefix": "kegg", "prefix_synonyms": [ "KEGG", @@ -11394,6 +15264,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "kestrelo", "uri_prefix": "http://purl.obolibrary.org/obo/kestrelo_", "uri_prefix_synonyms": [ @@ -11403,6 +15274,7 @@ ] }, { + "pattern": "^C\\d{8}$", "prefix": "knapsack", "uri_prefix": "http://www.knapsackfamily.com/knapsack_core/information.php?word=", "uri_prefix_synonyms": [ @@ -11422,19 +15294,7 @@ ] }, { - "prefix": "LABO", - "uri_prefix": "http://purl.obolibrary.org/obo/LABO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/LABO:", - "http://bioregistry.io/labo:", - "http://www.ebi.ac.uk/ols/ontologies/labo/terms?iri=http://purl.obolibrary.org/obo/LABO_", - "https://bioregistry.io/LABO:", - "https://bioregistry.io/labo:", - "https://purl.obolibrary.org/obo/LABO_", - "https://www.ebi.ac.uk/ols/ontologies/labo/terms?iri=http://purl.obolibrary.org/obo/LABO_" - ] - }, - { + "pattern": "^B\\d+$", "prefix": "langual", "uri_prefix": "https://www.langual.org/langual_thesaurus.asp?termid=", "uri_prefix_synonyms": [ @@ -11444,6 +15304,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "lbo", "uri_prefix": "http://purl.obolibrary.org/obo/LBO_", "uri_prefix_synonyms": [ @@ -11453,6 +15314,7 @@ ] }, { + "pattern": "^\\w{1,2}\\d{8,10}$", "prefix": "lcsh", "prefix_synonyms": [ "lcnaf", @@ -11472,6 +15334,7 @@ ] }, { + "pattern": "^[0-9A-Z]{4}[0-9A-Z]{14}[0-9A-Z]{2}$", "prefix": "lei", "uri_prefix": "https://www.gleif.org/lei/", "uri_prefix_synonyms": [ @@ -11487,19 +15350,7 @@ ] }, { - "prefix": "LEPAO", - "uri_prefix": "http://purl.obolibrary.org/obo/LEPAO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/LEPAO:", - "http://bioregistry.io/lepao:", - "http://www.ebi.ac.uk/ols/ontologies/lepao/terms?iri=http://purl.obolibrary.org/obo/LEPAO_", - "https://bioregistry.io/LEPAO:", - "https://bioregistry.io/lepao:", - "https://purl.obolibrary.org/obo/LEPAO_", - "https://www.ebi.ac.uk/ols/ontologies/lepao/terms?iri=http://purl.obolibrary.org/obo/LEPAO_" - ] - }, - { + "pattern": "^LGCEDe-S-\\d{9}$", "prefix": "lgai.cede", "uri_prefix": "https://s3.us-east-2.amazonaws.com/lg.cede/", "uri_prefix_synonyms": [ @@ -11513,6 +15364,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "lgic", "uri_prefix": "https://identifiers.org/lgic:", "uri_prefix_synonyms": [ @@ -11528,6 +15380,7 @@ ] }, { + "pattern": "^[A-Za-z0-9\\-\\/]+$", "prefix": "licebase", "uri_prefix": "https://licebase.org/?q=", "uri_prefix_synonyms": [ @@ -11543,6 +15396,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "ligandbook", "uri_prefix": "https://ligandbook.org/package/", "uri_prefix_synonyms": [ @@ -11558,6 +15412,7 @@ ] }, { + "pattern": "^(HTS|KSH)[0-9]{4}-[0-9]{8}|PDB_[0-9,A-Z]{2,3}|[CD][0-9]{5}$", "prefix": "ligandbox", "uri_prefix": "http://www.mypresto5.com/ligandbox/cgi-bin/liginf.cgi?id=", "uri_prefix_synonyms": [ @@ -11575,6 +15430,7 @@ ] }, { + "pattern": "^(\\w){3}$", "prefix": "ligandexpo", "uri_prefix": "https://identifiers.org/ligandexpo:", "uri_prefix_synonyms": [ @@ -11608,6 +15464,7 @@ ] }, { + "pattern": "^(LCL|LDC|ES|LSC|LPC)-\\d+$", "prefix": "lincs.cell", "prefix_synonyms": [ "LINCS_LDP" @@ -11628,6 +15485,7 @@ ] }, { + "pattern": "^[EL]D[SG]-\\d+$", "prefix": "lincs.data", "uri_prefix": "http://lincsportal.ccs.miami.edu/datasets/#/view/", "uri_prefix_synonyms": [ @@ -11645,6 +15503,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "lincs.protein", "uri_prefix": "https://lincs.hms.harvard.edu/db/proteins/", "uri_prefix_synonyms": [ @@ -11660,6 +15519,7 @@ ] }, { + "pattern": "^LSM-\\d+$", "prefix": "lincs.smallmolecule", "prefix_synonyms": [ "lincs" @@ -11680,6 +15540,7 @@ ] }, { + "pattern": "^[a-zA-Z0-9 +#'*]+$", "prefix": "linguist", "uri_prefix": "https://raw.githubusercontent.com/github/linguist/master/lib/linguist/languages.yml#", "uri_prefix_synonyms": [ @@ -11702,6 +15563,7 @@ ] }, { + "pattern": "^\\w+\\d+$", "prefix": "lipidbank", "uri_prefix": "http://lipidbank.jp/cgi-bin/detail.cgi?id=", "uri_prefix_synonyms": [ @@ -11719,6 +15581,7 @@ ] }, { + "pattern": "^LM(FA|GL|GP|SP|ST|PR|SL|PK)[0-9]{4}([0-9a-zA-Z]{4,6})?$", "prefix": "lipidmaps", "prefix_synonyms": [ "LIPID MAPS", @@ -11753,28 +15616,7 @@ ] }, { - "prefix": "LIPRO", - "uri_prefix": "http://purl.obolibrary.org/obo/LIPRO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/LIPRO:", - "http://bioregistry.io/lipro:", - "https://bioregistry.io/LIPRO:", - "https://bioregistry.io/lipro:", - "https://purl.obolibrary.org/obo/LIPRO_" - ] - }, - { - "prefix": "LOGGERHEAD", - "uri_prefix": "http://purl.obolibrary.org/obo/LOGGERHEAD_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/LOGGERHEAD:", - "http://bioregistry.io/loggerhead:", - "https://bioregistry.io/LOGGERHEAD:", - "https://bioregistry.io/loggerhead:", - "https://purl.obolibrary.org/obo/LOGGERHEAD_" - ] - }, - { + "pattern": "^(\\d|\\w)+-\\d$", "prefix": "loinc", "prefix_synonyms": [ "LNC" @@ -11791,6 +15633,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "lonza", "uri_prefix": "https://knowledge.lonza.com/cell?id=", "uri_prefix_synonyms": [ @@ -11811,6 +15654,7 @@ ] }, { + "pattern": "^LTS\\d{7}$", "prefix": "lotus", "uri_prefix": "https://lotus.naturalproducts.net/compound/lotus_id/", "uri_prefix_synonyms": [ @@ -11820,6 +15664,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "lpt", "uri_prefix": "http://purl.obolibrary.org/obo/LPT_", "uri_prefix_synonyms": [ @@ -11829,6 +15674,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "lrg", "uri_prefix": "https://identifiers.org/lrg:", "uri_prefix_synonyms": [ @@ -11852,6 +15698,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "lspci", "uri_prefix": "https://labsyspharm.github.io/lspci/", "uri_prefix_synonyms": [ @@ -11861,6 +15708,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "lter", "uri_prefix": "https://vocab.lternet.edu/vocab/vocab/index.php?tema=", "uri_prefix_synonyms": [ @@ -11870,31 +15718,17 @@ ] }, { - "prefix": "MA", - "uri_prefix": "http://purl.obolibrary.org/obo/MA_", + "pattern": "^\\w+$", + "prefix": "m4i", + "uri_prefix": "http://w3id.org/nfdi4ing/metadata4ing#", "uri_prefix_synonyms": [ - "http://bio2rdf.org/ma:", - "http://bioregistry.io/MA:", - "http://bioregistry.io/ma:", - "http://identifiers.org/MA/", - "http://identifiers.org/MA:", - "http://identifiers.org/ma/MA:", - "http://n2t.net/ma:", - "http://www.ebi.ac.uk/ols/ontologies/ma/terms?iri=http://purl.obolibrary.org/obo/MA_", - "http://www.informatics.jax.org/searches/AMA.cgi?id=MA:", - "https://bio2rdf.org/ma:", - "https://bioregistry.io/MA:", - "https://bioregistry.io/ma:", - "https://identifiers.org/MA/", - "https://identifiers.org/MA:", - "https://identifiers.org/ma/MA:", - "https://n2t.net/ma:", - "https://purl.obolibrary.org/obo/MA_", - "https://www.ebi.ac.uk/ols/ontologies/ma/terms?iri=http://purl.obolibrary.org/obo/MA_", - "https://www.informatics.jax.org/searches/AMA.cgi?id=MA:" + "http://bioregistry.io/m4i:", + "https://bioregistry.io/m4i:", + "https://w3id.org/nfdi4ing/metadata4ing#" ] }, { + "pattern": "^M\\d{4}$", "prefix": "macie", "uri_prefix": "https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/MACiE/entry/getPage.pl?id=", "uri_prefix_synonyms": [ @@ -11914,6 +15748,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "maizegdb.locus", "prefix_synonyms": [ "MaizeGDB" @@ -11939,31 +15774,6 @@ "https://www.maizegdb.org/gene_center/gene/" ] }, - { - "prefix": "MAMO", - "uri_prefix": "http://purl.obolibrary.org/obo/MAMO_", - "uri_prefix_synonyms": [ - "http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/", - "http://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/MAMO_", - "http://bioregistry.io/MAMO:", - "http://bioregistry.io/mamo:", - "http://identifiers.org/mamo/", - "http://identifiers.org/mamo/MAMO_", - "http://identifiers.org/mamo:", - "http://n2t.net/mamo:", - "http://www.ebi.ac.uk/ols/ontologies/mamo/terms?iri=http://purl.obolibrary.org/obo/MAMO_", - "https://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/", - "https://bioportal.bioontology.org/ontologies/MAMO/?p=classes&conceptid=http://identifiers.org/mamo/MAMO_", - "https://bioregistry.io/MAMO:", - "https://bioregistry.io/mamo:", - "https://identifiers.org/mamo/", - "https://identifiers.org/mamo/MAMO_", - "https://identifiers.org/mamo:", - "https://n2t.net/mamo:", - "https://purl.obolibrary.org/obo/MAMO_", - "https://www.ebi.ac.uk/ols/ontologies/mamo/terms?iri=http://purl.obolibrary.org/obo/MAMO_" - ] - }, { "prefix": "mampol", "uri_prefix": "http://mampol.uab.es/cgi-bin/MamPol_s2.pl?Accession=", @@ -11976,19 +15786,7 @@ ] }, { - "prefix": "MAO", - "uri_prefix": "http://purl.obolibrary.org/obo/MAO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/mao:", - "http://bioregistry.io/MAO:", - "http://bioregistry.io/mao:", - "https://bio2rdf.org/mao:", - "https://bioregistry.io/MAO:", - "https://bioregistry.io/mao:", - "https://purl.obolibrary.org/obo/MAO_" - ] - }, - { + "pattern": "^MSBNK-[0-9a-zA-Z_]+-[A-Z0-9_]+$", "prefix": "massbank", "uri_prefix": "https://massbank.jp/RecordDisplay?id=", "uri_prefix_synonyms": [ @@ -12008,6 +15806,7 @@ ] }, { + "pattern": "^MSV\\d+$", "prefix": "massive", "uri_prefix": "https://massive.ucsd.edu/ProteoSAFe/QueryMSV?id=", "uri_prefix_synonyms": [ @@ -12026,17 +15825,6 @@ "https://www.omicsdi.org/dataset/massive/" ] }, - { - "prefix": "MAT", - "uri_prefix": "http://purl.obolibrary.org/obo/MAT_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MAT:", - "http://bioregistry.io/mat:", - "https://bioregistry.io/MAT:", - "https://bioregistry.io/mat:", - "https://purl.obolibrary.org/obo/MAT_" - ] - }, { "prefix": "matrixdb", "uri_prefix": "http://matrixdb.univ-lyon1.fr/cgi-bin/current/newPort?type=biomolecule&value=", @@ -12049,6 +15837,7 @@ ] }, { + "pattern": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$", "prefix": "matrixdb.association", "uri_prefix": "https://identifiers.org/matrixdb.association:", "uri_prefix_synonyms": [ @@ -12061,30 +15850,6 @@ "https://n2t.net/matrixdb.association:" ] }, - { - "prefix": "MAXO", - "uri_prefix": "http://purl.obolibrary.org/obo/MAXO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MAXO:", - "http://bioregistry.io/maxo:", - "http://www.ebi.ac.uk/ols/ontologies/maxo/terms?iri=http://purl.obolibrary.org/obo/MAXO_", - "https://bioregistry.io/MAXO:", - "https://bioregistry.io/maxo:", - "https://purl.obolibrary.org/obo/MAXO_", - "https://www.ebi.ac.uk/ols/ontologies/maxo/terms?iri=http://purl.obolibrary.org/obo/MAXO_" - ] - }, - { - "prefix": "MBA", - "uri_prefix": "https://biopragmatics.github.io/providers/mba/", - "uri_prefix_synonyms": [ - "http://biopragmatics.github.io/providers/mba/", - "http://bioregistry.io/MBA:", - "http://bioregistry.io/mba:", - "https://bioregistry.io/MBA:", - "https://bioregistry.io/mba:" - ] - }, { "prefix": "mcc", "uri_prefix": "http://www.semanticweb.org/pallabi.d/ontologies/2014/2/untitled-ontology-11#", @@ -12095,19 +15860,7 @@ ] }, { - "prefix": "MCO", - "uri_prefix": "http://purl.obolibrary.org/obo/MCO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MCO:", - "http://bioregistry.io/mco:", - "http://www.ebi.ac.uk/ols/ontologies/mco/terms?iri=http://purl.obolibrary.org/obo/MCO_", - "https://bioregistry.io/MCO:", - "https://bioregistry.io/mco:", - "https://purl.obolibrary.org/obo/MCO_", - "https://www.ebi.ac.uk/ols/ontologies/mco/terms?iri=http://purl.obolibrary.org/obo/MCO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "mdm", "uri_prefix": "https://medical-data-models.org/forms/", "uri_prefix_synonyms": [ @@ -12123,6 +15876,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "meddra", "prefix_synonyms": [ "MEDRA", @@ -12156,6 +15910,7 @@ ] }, { + "pattern": "^[CN]*\\d{4,7}$", "prefix": "medgen", "uri_prefix": "https://www.ncbi.nlm.nih.gov/medgen/", "uri_prefix_synonyms": [ @@ -12171,6 +15926,37 @@ ] }, { + "pattern": "^\\d+$", + "prefix": "mediadive.ingredient", + "uri_prefix": "https://mediadive.dsmz.de/ingredients/", + "uri_prefix_synonyms": [ + "http://bioregistry.io/mediadive.ingredient:", + "http://mediadive.dsmz.de/ingredients/", + "https://bioregistry.io/mediadive.ingredient:" + ] + }, + { + "pattern": "^\\d+\\w?$", + "prefix": "mediadive.medium", + "uri_prefix": "https://mediadive.dsmz.de/medium/", + "uri_prefix_synonyms": [ + "http://bioregistry.io/mediadive.medium:", + "http://mediadive.dsmz.de/medium/", + "https://bioregistry.io/mediadive.medium:" + ] + }, + { + "pattern": "^S\\d+$", + "prefix": "mediadive.solution", + "uri_prefix": "https://mediadive.dsmz.de/solutions/", + "uri_prefix_synonyms": [ + "http://bioregistry.io/mediadive.solution:", + "http://mediadive.dsmz.de/solutions/", + "https://bioregistry.io/mediadive.solution:" + ] + }, + { + "pattern": "^\\d+$", "prefix": "medlineplus", "uri_prefix": "https://identifiers.org/medlineplus:", "uri_prefix_synonyms": [ @@ -12193,6 +15979,7 @@ ] }, { + "pattern": "^[SCTAGMNUI]\\d{2}\\.([AB]\\d{2}|\\d{3})$", "prefix": "merops.entry", "prefix_synonyms": [ "merops.inhibitor" @@ -12217,6 +16004,7 @@ ] }, { + "pattern": "^[SCTAGMNU]\\d+$", "prefix": "merops.family", "uri_prefix": "https://www.ebi.ac.uk/merops/cgi-bin/famsum?family=", "uri_prefix_synonyms": [ @@ -12234,6 +16022,7 @@ ] }, { + "pattern": "^(C|D)\\d{6,9}$", "prefix": "mesh", "prefix_synonyms": [ "MESH", @@ -12336,6 +16125,7 @@ ] }, { + "pattern": "^MTBLS\\d+$", "prefix": "metabolights", "uri_prefix": "https://www.ebi.ac.uk/metabolights/", "uri_prefix_synonyms": [ @@ -12353,6 +16143,7 @@ ] }, { + "pattern": "^[A-Za-z0-9+_.%-:]+$", "prefix": "metacyc.compound", "prefix_synonyms": [ "MetaCyc" @@ -12375,6 +16166,7 @@ ] }, { + "pattern": "^[A-Za-z0-9+_.%-:]+$", "prefix": "metacyc.reaction", "uri_prefix": "https://metacyc.org/META/NEW-IMAGE?type=REACTION&object=", "uri_prefix_synonyms": [ @@ -12390,6 +16182,7 @@ ] }, { + "pattern": "^(MNXM\\d+|BIOMASS|WATER)$", "prefix": "metanetx.chemical", "uri_prefix": "https://www.metanetx.org/chem_info/", "uri_prefix_synonyms": [ @@ -12405,6 +16198,7 @@ ] }, { + "pattern": "^(MNX[CD]\\d+|BOUNDARY|IN|OUT)$", "prefix": "metanetx.compartment", "uri_prefix": "https://www.metanetx.org/comp_info/", "uri_prefix_synonyms": [ @@ -12420,6 +16214,7 @@ ] }, { + "pattern": "^(MNXR\\d+|EMPTY)$", "prefix": "metanetx.reaction", "uri_prefix": "https://www.metanetx.org/equa_info/", "uri_prefix_synonyms": [ @@ -12435,6 +16230,7 @@ ] }, { + "pattern": "^(MAM\\d{5}\\w)|(MAR\\d{5})$", "prefix": "metatlas", "prefix_synonyms": [ "metatlas.metabolite", @@ -12456,6 +16252,7 @@ ] }, { + "pattern": "^\\d{4}$", "prefix": "metlin", "uri_prefix": "http://metlin.scripps.edu/metabo_info.php?molid=", "uri_prefix_synonyms": [ @@ -12463,109 +16260,44 @@ "http://identifiers.org/metlin/", "http://identifiers.org/metlin:", "http://n2t.net/metlin:", - "https://bioregistry.io/metlin:", - "https://identifiers.org/metlin/", - "https://identifiers.org/metlin:", - "https://metlin.scripps.edu/metabo_info.php?molid=", - "https://n2t.net/metlin:" - ] - }, - { - "prefix": "metnetdb", - "uri_prefix": "http://metnetonline.org/browse_pathway2.php?pthID=", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/metnetdb:", - "http://bioregistry.io/metnetdb:", - "https://bio2rdf.org/metnetdb:", - "https://bioregistry.io/metnetdb:", - "https://metnetonline.org/browse_pathway2.php?pthID=" - ] - }, - { - "prefix": "mex", - "uri_prefix": "https://www.metabolome-express.org/datasetview.php?datasetid=", - "uri_prefix_synonyms": [ - "http://bioregistry.io/mex:", - "http://identifiers.org/mex/", - "http://identifiers.org/mex:", - "http://n2t.net/mex:", - "http://www.metabolome-express.org/datasetview.php?datasetid=", - "http://www.omicsdi.org/dataset/metabolome_express/MEX", - "https://bioregistry.io/mex:", - "https://identifiers.org/mex/", - "https://identifiers.org/mex:", - "https://n2t.net/mex:", - "https://www.omicsdi.org/dataset/metabolome_express/MEX" - ] - }, - { - "prefix": "MF", - "uri_prefix": "http://purl.obolibrary.org/obo/MF_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MF:", - "http://bioregistry.io/mf:", - "http://www.ebi.ac.uk/ols/ontologies/mf/terms?iri=http://purl.obolibrary.org/obo/MF_", - "https://bioregistry.io/MF:", - "https://bioregistry.io/mf:", - "https://purl.obolibrary.org/obo/MF_", - "https://www.ebi.ac.uk/ols/ontologies/mf/terms?iri=http://purl.obolibrary.org/obo/MF_" - ] - }, - { - "prefix": "MFMO", - "uri_prefix": "http://purl.obolibrary.org/obo/MFMO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MFMO:", - "http://bioregistry.io/mfmo:", - "http://purl.obolibrary.org/obo/mfmo.owl#MFMO_", - "http://www.ebi.ac.uk/ols/ontologies/mfmo/terms?iri=http://purl.obolibrary.org/obo/MFMO_", - "https://bioregistry.io/MFMO:", - "https://bioregistry.io/mfmo:", - "https://purl.obolibrary.org/obo/MFMO_", - "https://purl.obolibrary.org/obo/mfmo.owl#MFMO_", - "https://www.ebi.ac.uk/ols/ontologies/mfmo/terms?iri=http://purl.obolibrary.org/obo/MFMO_" - ] - }, - { - "prefix": "MFO", - "uri_prefix": "http://purl.obolibrary.org/obo/MFO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/mfo:", - "http://bioregistry.io/MFO:", - "http://bioregistry.io/mfo:", - "https://bio2rdf.org/mfo:", - "https://bioregistry.io/MFO:", - "https://bioregistry.io/mfo:", - "https://purl.obolibrary.org/obo/MFO_" + "https://bioregistry.io/metlin:", + "https://identifiers.org/metlin/", + "https://identifiers.org/metlin:", + "https://metlin.scripps.edu/metabo_info.php?molid=", + "https://n2t.net/metlin:" ] }, { - "prefix": "MFOEM", - "uri_prefix": "http://purl.obolibrary.org/obo/MFOEM_", + "prefix": "metnetdb", + "uri_prefix": "http://metnetonline.org/browse_pathway2.php?pthID=", "uri_prefix_synonyms": [ - "http://bioregistry.io/MFOEM:", - "http://bioregistry.io/mfoem:", - "http://www.ebi.ac.uk/ols/ontologies/mfoem/terms?iri=http://purl.obolibrary.org/obo/MFOEM_", - "https://bioregistry.io/MFOEM:", - "https://bioregistry.io/mfoem:", - "https://purl.obolibrary.org/obo/MFOEM_", - "https://www.ebi.ac.uk/ols/ontologies/mfoem/terms?iri=http://purl.obolibrary.org/obo/MFOEM_" + "http://bio2rdf.org/metnetdb:", + "http://bioregistry.io/metnetdb:", + "https://bio2rdf.org/metnetdb:", + "https://bioregistry.io/metnetdb:", + "https://metnetonline.org/browse_pathway2.php?pthID=" ] }, { - "prefix": "MFOMD", - "uri_prefix": "http://purl.obolibrary.org/obo/MFOMD_", + "pattern": "^\\d+$", + "prefix": "mex", + "uri_prefix": "https://www.metabolome-express.org/datasetview.php?datasetid=", "uri_prefix_synonyms": [ - "http://bioregistry.io/MFOMD:", - "http://bioregistry.io/mfomd:", - "http://www.ebi.ac.uk/ols/ontologies/mfomd/terms?iri=http://purl.obolibrary.org/obo/MFOMD_", - "https://bioregistry.io/MFOMD:", - "https://bioregistry.io/mfomd:", - "https://purl.obolibrary.org/obo/MFOMD_", - "https://www.ebi.ac.uk/ols/ontologies/mfomd/terms?iri=http://purl.obolibrary.org/obo/MFOMD_" + "http://bioregistry.io/mex:", + "http://identifiers.org/mex/", + "http://identifiers.org/mex:", + "http://n2t.net/mex:", + "http://www.metabolome-express.org/datasetview.php?datasetid=", + "http://www.omicsdi.org/dataset/metabolome_express/MEX", + "https://bioregistry.io/mex:", + "https://identifiers.org/mex/", + "https://identifiers.org/mex:", + "https://n2t.net/mex:", + "https://www.omicsdi.org/dataset/metabolome_express/MEX" ] }, { + "pattern": "^\\d+$", "prefix": "mge", "prefix_synonyms": [ "aclame" @@ -12592,42 +16324,7 @@ ] }, { - "prefix": "MGI", - "prefix_synonyms": [ - "MGD" - ], - "uri_prefix": "http://www.informatics.jax.org/accession/MGI:", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/mgi:", - "http://bioregistry.io/MGD:", - "http://bioregistry.io/MGI:", - "http://bioregistry.io/mgi:", - "http://identifiers.org/MGI/", - "http://identifiers.org/MGI:", - "http://identifiers.org/mgi/MGI:", - "http://n2t.net/mgi:", - "http://www.alliancegenome.org/gene/MGI:", - "http://www.informatics.jax.org/accession/", - "http://www.informatics.jax.org/marker/", - "http://www.informatics.jax.org/marker/MGI:", - "http://www.informatics.jax.org/searches/accession_report.cgi?id=mgi:", - "https://bio2rdf.org/mgi:", - "https://bioregistry.io/MGD:", - "https://bioregistry.io/MGI:", - "https://bioregistry.io/mgi:", - "https://identifiers.org/MGI/", - "https://identifiers.org/MGI:", - "https://identifiers.org/mgi/MGI:", - "https://n2t.net/mgi:", - "https://www.alliancegenome.org/gene/MGI:", - "https://www.informatics.jax.org/accession/", - "https://www.informatics.jax.org/accession/MGI:", - "https://www.informatics.jax.org/marker/", - "https://www.informatics.jax.org/marker/MGI:", - "https://www.informatics.jax.org/searches/accession_report.cgi?id=mgi:" - ] - }, - { + "pattern": "^MGYA\\d+$", "prefix": "mgnify.analysis", "uri_prefix": "https://www.ebi.ac.uk/metagenomics/analyses/", "uri_prefix_synonyms": [ @@ -12637,6 +16334,7 @@ ] }, { + "pattern": "^[A-Z]+[0-9]+$", "prefix": "mgnify.proj", "uri_prefix": "https://www.ebi.ac.uk/metagenomics/projects/", "uri_prefix_synonyms": [ @@ -12652,6 +16350,7 @@ ] }, { + "pattern": "^[A-Z]+[0-9]+$", "prefix": "mgnify.samp", "uri_prefix": "https://www.ebi.ac.uk/metagenomics/samples/", "uri_prefix_synonyms": [ @@ -12667,64 +16366,7 @@ ] }, { - "prefix": "MI", - "prefix_synonyms": [ - "PSI-MI" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/MI_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/psi.mi:", - "http://bioregistry.io/MI:", - "http://bioregistry.io/PSI-MI:", - "http://bioregistry.io/mi:", - "http://identifiers.org/MI/", - "http://identifiers.org/MI:", - "http://identifiers.org/mi/MI:", - "http://n2t.net/psimi:", - "http://www.ebi.ac.uk/ols/ontologies/mi/terms?iri=http://purl.obolibrary.org/obo/MI_", - "http://www.ebi.ac.uk/ols/ontologies/mi/terms?obo_id=MI:", - "http://www.ebi.ac.uk/ols4/ontologies/mi/terms?obo_id=MI:", - "https://bio2rdf.org/psi.mi:", - "https://bioregistry.io/MI:", - "https://bioregistry.io/PSI-MI:", - "https://bioregistry.io/mi:", - "https://identifiers.org/MI/", - "https://identifiers.org/MI:", - "https://identifiers.org/mi/MI:", - "https://n2t.net/psimi:", - "https://purl.obolibrary.org/obo/MI_", - "https://www.ebi.ac.uk/ols/ontologies/mi/terms?iri=http://purl.obolibrary.org/obo/MI_", - "https://www.ebi.ac.uk/ols/ontologies/mi/terms?obo_id=MI:", - "https://www.ebi.ac.uk/ols4/ontologies/mi/terms?obo_id=MI:" - ] - }, - { - "prefix": "MIAPA", - "uri_prefix": "http://purl.obolibrary.org/obo/MIAPA_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MIAPA:", - "http://bioregistry.io/miapa:", - "http://www.ebi.ac.uk/ols/ontologies/miapa/terms?iri=http://purl.obolibrary.org/obo/MIAPA_", - "https://bioregistry.io/MIAPA:", - "https://bioregistry.io/miapa:", - "https://purl.obolibrary.org/obo/MIAPA_", - "https://www.ebi.ac.uk/ols/ontologies/miapa/terms?iri=http://purl.obolibrary.org/obo/MIAPA_" - ] - }, - { - "prefix": "MICRO", - "uri_prefix": "http://purl.obolibrary.org/obo/MICRO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MICRO:", - "http://bioregistry.io/micro:", - "http://www.ebi.ac.uk/ols/ontologies/micro/terms?iri=http://purl.obolibrary.org/obo/MICRO_", - "https://bioregistry.io/MICRO:", - "https://bioregistry.io/micro:", - "https://purl.obolibrary.org/obo/MICRO_", - "https://www.ebi.ac.uk/ols/ontologies/micro/terms?iri=http://purl.obolibrary.org/obo/MICRO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "microscope", "uri_prefix": "http://www.genoscope.cns.fr/agc/microscope/mage/info.php?id=", "uri_prefix_synonyms": [ @@ -12740,6 +16382,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "microsporidia", "uri_prefix": "http://microsporidiadb.org/micro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", "uri_prefix_synonyms": [ @@ -12766,6 +16409,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "mimodb", "uri_prefix": "http://immunet.cn/bdb/index.php/mimoset/", "uri_prefix_synonyms": [ @@ -12785,6 +16429,7 @@ ] }, { + "pattern": "^[A-Za-z0-9]+$", "prefix": "minid", "uri_prefix": "https://hdl.handle.net/hdl:20.500.12582/", "uri_prefix_synonyms": [ @@ -12802,6 +16447,7 @@ ] }, { + "pattern": "^[A-Za-z0-9]+$", "prefix": "minid.test", "uri_prefix": "https://hdl.handle.net/hdl:20.500.12633/", "uri_prefix_synonyms": [ @@ -12815,6 +16461,7 @@ ] }, { + "pattern": "^\\d{1,7}$", "prefix": "mint", "uri_prefix": "https://mint.bio.uniroma2.it/index.php/detailed-curation/?id=MINT-", "uri_prefix_synonyms": [ @@ -12842,6 +16489,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "mipmod", "uri_prefix": "http://bioinfo.iitk.ac.in/MIPModDB/result.php?code=", "uri_prefix_synonyms": [ @@ -12859,6 +16507,7 @@ ] }, { + "pattern": "^\\d{8}$", "prefix": "mir", "uri_prefix": "https://registry.identifiers.org/registry?query=MIR:", "uri_prefix_synonyms": [ @@ -12878,6 +16527,7 @@ ] }, { + "pattern": "^MI\\d{7}$", "prefix": "mirbase", "uri_prefix": "http://www.mirbase.org/cgi-bin/mirna_entry.pl?acc=", "uri_prefix_synonyms": [ @@ -12909,6 +16559,7 @@ ] }, { + "pattern": "^MIMAT\\d{7}$", "prefix": "mirbase.mature", "prefix_synonyms": [ "MIRBASEM" @@ -12933,6 +16584,7 @@ ] }, { + "pattern": "^\\d+(\\w+)?$", "prefix": "mirex", "uri_prefix": "https://identifiers.org/mirex:", "uri_prefix_synonyms": [ @@ -12946,6 +16598,7 @@ ] }, { + "pattern": "^[0-9a-z_:\\.-]+$", "prefix": "miriam", "prefix_synonyms": [ "identifiers.namespace" @@ -12964,6 +16617,7 @@ ] }, { + "pattern": "^000\\d{5}$", "prefix": "miriam.collection", "uri_prefix": "https://www.ebi.ac.uk/miriam/main/", "uri_prefix_synonyms": [ @@ -12981,6 +16635,7 @@ ] }, { + "pattern": "^001\\d{5}$", "prefix": "miriam.resource", "uri_prefix": "https://www.ebi.ac.uk/miriam/main/resources/", "uri_prefix_synonyms": [ @@ -13000,17 +16655,7 @@ ] }, { - "prefix": "MIRNAO", - "uri_prefix": "http://purl.obolibrary.org/obo/MIRNAO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MIRNAO:", - "http://bioregistry.io/mirnao:", - "https://bioregistry.io/MIRNAO:", - "https://bioregistry.io/mirnao:", - "https://purl.obolibrary.org/obo/MIRNAO_" - ] - }, - { + "pattern": "^MNEST\\d+$", "prefix": "mirnest", "uri_prefix": "http://rhesus.amu.edu.pl/mirnest/copy/details.php?id=", "uri_prefix_synonyms": [ @@ -13030,25 +16675,15 @@ ] }, { - "prefix": "MIRO", - "uri_prefix": "http://purl.obolibrary.org/obo/MIRO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MIRO:", - "http://bioregistry.io/miro:", - "http://www.ebi.ac.uk/ols/ontologies/miro/terms?iri=http://purl.obolibrary.org/obo/MIRO_", - "https://bioregistry.io/MIRO:", - "https://bioregistry.io/miro:", - "https://purl.obolibrary.org/obo/MIRO_", - "https://www.ebi.ac.uk/ols/ontologies/miro/terms?iri=http://purl.obolibrary.org/obo/MIRO_" - ] - }, - { + "pattern": "^MIRT\\d{6}$", "prefix": "mirtarbase", - "uri_prefix": "http://mirtarbase.mbc.nctu.edu.tw/php/detail.php?mirtid=", + "uri_prefix": "https://mirtarbase.cuhk.edu.cn/~miRTarBase/miRTarBase_2022/php/detail.php?mirtid=", "uri_prefix_synonyms": [ "http://bioregistry.io/mirtarbase:", "http://identifiers.org/mirtarbase/", "http://identifiers.org/mirtarbase:", + "http://mirtarbase.cuhk.edu.cn/~miRTarBase/miRTarBase_2022/php/detail.php?mirtid=", + "http://mirtarbase.mbc.nctu.edu.tw/php/detail.php?mirtid=", "http://n2t.net/mirtarbase:", "https://bioregistry.io/mirtarbase:", "https://identifiers.org/mirtarbase/", @@ -13058,6 +16693,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "mixs", "uri_prefix": "https://w3id.org/mixs/", "uri_prefix_synonyms": [ @@ -13069,6 +16705,7 @@ ] }, { + "pattern": "^[0-9a-zA-Z\\.\\-\\_]+$", "prefix": "mlc", "uri_prefix": "https://www.mlcommons.org/mlc-id/", "uri_prefix_synonyms": [ @@ -13082,6 +16719,7 @@ ] }, { + "pattern": "^\\d{1,5}$", "prefix": "mmdb", "uri_prefix": "http://www.ncbi.nlm.nih.gov/Structure/mmdb/mmdbsrv.cgi?uid=", "uri_prefix_synonyms": [ @@ -13099,6 +16737,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "mmmp.biomaps", "prefix_synonyms": [ "mmmp:biomaps" @@ -13121,19 +16760,7 @@ ] }, { - "prefix": "MMO", - "uri_prefix": "http://purl.obolibrary.org/obo/MMO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MMO:", - "http://bioregistry.io/mmo:", - "http://www.ebi.ac.uk/ols/ontologies/mmo/terms?iri=http://purl.obolibrary.org/obo/MMO_", - "https://bioregistry.io/MMO:", - "https://bioregistry.io/mmo:", - "https://purl.obolibrary.org/obo/MMO_", - "https://www.ebi.ac.uk/ols/ontologies/mmo/terms?iri=http://purl.obolibrary.org/obo/MMO_" - ] - }, - { + "pattern": "^MMP\\d+.\\d+$", "prefix": "mmp.cat", "uri_prefix": "https://mmp.sfb.uit.no/databases/marcat/#/records/", "uri_prefix_synonyms": [ @@ -13149,6 +16776,7 @@ ] }, { + "pattern": "^MMP\\d+.\\d+$", "prefix": "mmp.db", "uri_prefix": "https://mmp.sfb.uit.no/databases/mardb/#/records/", "uri_prefix_synonyms": [ @@ -13164,6 +16792,7 @@ ] }, { + "pattern": "^MMP\\d+.\\d+$", "prefix": "mmp.fun", "uri_prefix": "https://mmp.sfb.uit.no/databases/marfun/#/records/", "uri_prefix_synonyms": [ @@ -13177,6 +16806,7 @@ ] }, { + "pattern": "^MMP\\d+.\\d+$", "prefix": "mmp.ref", "uri_prefix": "https://mmp.sfb.uit.no/databases/marref/#/records/", "uri_prefix_synonyms": [ @@ -13192,6 +16822,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "mmrrc", "uri_prefix": "http://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=", "uri_prefix_synonyms": [ @@ -13199,91 +16830,30 @@ "http://identifiers.org/mmrrc/", "http://identifiers.org/mmrrc:", "http://n2t.net/mmrrc:", - "http://www.mmrrc.org/catalog/sds.php?mmrrc_id=", - "https://bioregistry.io/mmrrc:", - "https://identifiers.org/mmrrc/", - "https://identifiers.org/mmrrc:", - "https://n2t.net/mmrrc:", - "https://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=", - "https://www.mmrrc.org/catalog/sds.php?mmrrc_id=" - ] - }, - { - "prefix": "mmsinc", - "uri_prefix": "http://mms.dsfarm.unipd.it/mmsinc/search/molecule.php?mmscode=", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/mmsinc:", - "http://bioregistry.io/mmsinc:", - "https://bio2rdf.org/mmsinc:", - "https://bioregistry.io/mmsinc:", - "https://mms.dsfarm.unipd.it/mmsinc/search/molecule.php?mmscode=" - ] - }, - { - "prefix": "MmusDv", - "uri_prefix": "http://purl.obolibrary.org/obo/MmusDv_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MmusDv:", - "http://bioregistry.io/mmusdv:", - "http://www.ebi.ac.uk/ols/ontologies/mmusdv/terms?iri=http://purl.obolibrary.org/obo/MmusDv_", - "https://bioregistry.io/MmusDv:", - "https://bioregistry.io/mmusdv:", - "https://purl.obolibrary.org/obo/MmusDv_", - "https://www.ebi.ac.uk/ols/ontologies/mmusdv/terms?iri=http://purl.obolibrary.org/obo/MmusDv_" - ] - }, - { - "prefix": "MO", - "uri_prefix": "http://purl.obolibrary.org/obo/MO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MO:", - "http://bioregistry.io/mo:", - "http://identifiers.org/mo/", - "http://identifiers.org/mo:", - "http://mged.sourceforge.net/ontologies/MGEDontology.php#", - "http://n2t.net/mo:", - "http://purl.bioontology.org/ontology/MO/", - "https://bioregistry.io/MO:", - "https://bioregistry.io/mo:", - "https://identifiers.org/mo/", - "https://identifiers.org/mo:", - "https://mged.sourceforge.net/ontologies/MGEDontology.php#", - "https://n2t.net/mo:", - "https://purl.bioontology.org/ontology/MO/", - "https://purl.obolibrary.org/obo/MO_" - ] - }, - { - "prefix": "MOD", - "prefix_synonyms": [ - "PSI-MOD" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/MOD_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/psi.mod:", - "http://bioportal.bioontology.org/ontologies/1041?p=terms&conceptid=MOD:", - "http://bioregistry.io/MOD:", - "http://bioregistry.io/PSI-MOD:", - "http://bioregistry.io/mod:", - "http://identifiers.org/MOD/", - "http://identifiers.org/MOD:", - "http://identifiers.org/mod/MOD:", - "http://n2t.net/mod:", - "http://www.ebi.ac.uk/ols/ontologies/mod/terms?iri=http://purl.obolibrary.org/obo/MOD_", - "https://bio2rdf.org/psi.mod:", - "https://bioportal.bioontology.org/ontologies/1041?p=terms&conceptid=MOD:", - "https://bioregistry.io/MOD:", - "https://bioregistry.io/PSI-MOD:", - "https://bioregistry.io/mod:", - "https://identifiers.org/MOD/", - "https://identifiers.org/MOD:", - "https://identifiers.org/mod/MOD:", - "https://n2t.net/mod:", - "https://purl.obolibrary.org/obo/MOD_", - "https://www.ebi.ac.uk/ols/ontologies/mod/terms?iri=http://purl.obolibrary.org/obo/MOD_" + "http://scicrunch.org/resolver/RRID:MMRRC_", + "http://www.mmrrc.org/catalog/sds.php?mmrrc_id=", + "https://bioregistry.io/mmrrc:", + "https://identifiers.org/mmrrc/", + "https://identifiers.org/mmrrc:", + "https://n2t.net/mmrrc:", + "https://scicrunch.org/resolver/RRID:MMRRC_", + "https://www.mmrrc.org/catalog/getSDS.php?mmrrc_id=", + "https://www.mmrrc.org/catalog/sds.php?mmrrc_id=" + ] + }, + { + "prefix": "mmsinc", + "uri_prefix": "http://mms.dsfarm.unipd.it/mmsinc/search/molecule.php?mmscode=", + "uri_prefix_synonyms": [ + "http://bio2rdf.org/mmsinc:", + "http://bioregistry.io/mmsinc:", + "https://bio2rdf.org/mmsinc:", + "https://bioregistry.io/mmsinc:", + "https://mms.dsfarm.unipd.it/mmsinc/search/molecule.php?mmscode=" ] }, { + "pattern": "^\\d+$", "prefix": "modeldb", "uri_prefix": "https://modeldb.science/", "uri_prefix_synonyms": [ @@ -13303,6 +16873,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "modeldb.concept", "uri_prefix": "https://senselab.med.yale.edu/ModelDB/ModelList?id=", "uri_prefix_synonyms": [ @@ -13316,6 +16887,7 @@ ] }, { + "pattern": "^(\\d{1,7}\\-\\d{2}\\-\\d)|([A-Za-z0-9\\+\\-\\_]+)$", "prefix": "molbase", "uri_prefix": "http://www.molbase.com/en/index.php?app=search&search_keyword=", "uri_prefix_synonyms": [ @@ -13331,6 +16903,7 @@ ] }, { + "pattern": "^[m,M]{2}[0-9]{5}[0-9]*$", "prefix": "molmedb", "uri_prefix": "https://molmedb.upol.cz/mol/", "uri_prefix_synonyms": [ @@ -13355,34 +16928,7 @@ ] }, { - "prefix": "MONDO", - "uri_prefix": "http://purl.obolibrary.org/obo/MONDO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MONDO:", - "http://bioregistry.io/mondo:", - "http://www.bioregistry.io/", - "http://www.ebi.ac.uk/ols/ontologies/mondo/terms?iri=http://purl.obolibrary.org/obo/MONDO_", - "https://bioregistry.io/MONDO:", - "https://bioregistry.io/mondo:", - "https://purl.obolibrary.org/obo/MONDO_", - "https://www.bioregistry.io/", - "https://www.ebi.ac.uk/ols/ontologies/mondo/terms?iri=http://purl.obolibrary.org/obo/MONDO_" - ] - }, - { - "prefix": "MOP", - "uri_prefix": "http://purl.obolibrary.org/obo/MOP_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MOP:", - "http://bioregistry.io/mop:", - "http://www.ebi.ac.uk/ols/ontologies/mop/terms?iri=http://purl.obolibrary.org/obo/MOP_", - "https://bioregistry.io/MOP:", - "https://bioregistry.io/mop:", - "https://purl.obolibrary.org/obo/MOP_", - "https://www.ebi.ac.uk/ols/ontologies/mop/terms?iri=http://purl.obolibrary.org/obo/MOP_" - ] - }, - { + "pattern": "^M[0-9]{4,}$", "prefix": "morpheus", "uri_prefix": "https://morpheus.gitlab.io/models/", "uri_prefix_synonyms": [ @@ -13396,6 +16942,7 @@ ] }, { + "pattern": "^\\d{8}$", "prefix": "mosaic", "uri_prefix": "https://purl.dataone.org/odo/MOSAIC_", "uri_prefix_synonyms": [ @@ -13405,52 +16952,7 @@ ] }, { - "prefix": "MP", - "uri_prefix": "http://purl.obolibrary.org/obo/MP_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/mp:", - "http://bioportal.bioontology.org/ontologies/MP/MP:", - "http://bioregistry.io/MP:", - "http://bioregistry.io/mp:", - "http://identifiers.org/MP/", - "http://identifiers.org/MP:", - "http://identifiers.org/mp/MP:", - "http://n2t.net/mp:", - "http://www.ebi.ac.uk/ols/ontologies/mp/terms?iri=http://purl.obolibrary.org/obo/MP_", - "http://www.informatics.jax.org/searches/Phat.cgi?id=", - "http://www.informatics.jax.org/searches/Phat.cgi?id=MP:", - "http://www.nextprot.org/term/MP:", - "https://bio2rdf.org/mp:", - "https://bioportal.bioontology.org/ontologies/MP/MP:", - "https://bioregistry.io/MP:", - "https://bioregistry.io/mp:", - "https://identifiers.org/MP/", - "https://identifiers.org/MP:", - "https://identifiers.org/mp/MP:", - "https://n2t.net/mp:", - "https://purl.obolibrary.org/obo/MP_", - "https://www.ebi.ac.uk/ols/ontologies/mp/terms?iri=http://purl.obolibrary.org/obo/MP_", - "https://www.informatics.jax.org/searches/Phat.cgi?id=", - "https://www.informatics.jax.org/searches/Phat.cgi?id=MP:", - "https://www.nextprot.org/term/MP:" - ] - }, - { - "prefix": "MPATH", - "uri_prefix": "http://purl.obolibrary.org/obo/MPATH_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/mpath:", - "http://bioregistry.io/MPATH:", - "http://bioregistry.io/mpath:", - "http://www.ebi.ac.uk/ols/ontologies/mpath/terms?iri=http://purl.obolibrary.org/obo/MPATH_", - "https://bio2rdf.org/mpath:", - "https://bioregistry.io/MPATH:", - "https://bioregistry.io/mpath:", - "https://purl.obolibrary.org/obo/MPATH_", - "https://www.ebi.ac.uk/ols/ontologies/mpath/terms?iri=http://purl.obolibrary.org/obo/MPATH_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "mpid", "prefix_synonyms": [ "mpidb" @@ -13477,55 +16979,7 @@ ] }, { - "prefix": "MPIO", - "uri_prefix": "http://purl.obolibrary.org/obo/MPIO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MPIO:", - "http://bioregistry.io/mpio:", - "http://www.ebi.ac.uk/ols/ontologies/mpio/terms?iri=http://purl.obolibrary.org/obo/MPIO_", - "https://bioregistry.io/MPIO:", - "https://bioregistry.io/mpio:", - "https://purl.obolibrary.org/obo/MPIO_", - "https://www.ebi.ac.uk/ols/ontologies/mpio/terms?iri=http://purl.obolibrary.org/obo/MPIO_" - ] - }, - { - "prefix": "MRO", - "uri_prefix": "http://purl.obolibrary.org/obo/MRO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MRO:", - "http://bioregistry.io/mro:", - "http://www.ebi.ac.uk/ols/ontologies/mro/terms?iri=http://purl.obolibrary.org/obo/MRO_", - "https://bioregistry.io/MRO:", - "https://bioregistry.io/mro:", - "https://purl.obolibrary.org/obo/MRO_", - "https://www.ebi.ac.uk/ols/ontologies/mro/terms?iri=http://purl.obolibrary.org/obo/MRO_" - ] - }, - { - "prefix": "MS", - "uri_prefix": "http://purl.obolibrary.org/obo/MS_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/MS:", - "http://bioregistry.io/ms:", - "http://identifiers.org/MS/", - "http://identifiers.org/MS:", 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"uri_prefix_synonyms": [ @@ -13613,6 +17069,7 @@ ] }, { + "pattern": "^ST[0-9]{6}$", "prefix": "mw.study", "uri_prefix": "http://www.metabolomicsworkbench.org/data/DRCCMetadata.php?Mode=Study&StudyID=", "uri_prefix_synonyms": [ @@ -13630,6 +17087,7 @@ ] }, { + "pattern": "^ML\\w+$", "prefix": "myco.lepra", "uri_prefix": "http://mycobrowser.epfl.ch/leprosysearch.php?gene+name=", "uri_prefix_synonyms": [ @@ -13647,6 +17105,7 @@ ] }, { + "pattern": "^MMAR\\_\\d+$", "prefix": "myco.marinum", "uri_prefix": "http://mycobrowser.epfl.ch/marinosearch.php?gene+name=", "uri_prefix_synonyms": [ @@ -13664,6 +17123,7 @@ ] }, { + "pattern": "^MSMEG\\w+$", "prefix": "myco.smeg", "uri_prefix": "http://mycobrowser.epfl.ch/smegmasearch.php?gene+name=", "uri_prefix_synonyms": [ @@ -13681,6 +17141,7 @@ ] }, { + "pattern": "^Rv\\d{4}(A|B|c)?$", "prefix": "myco.tuber", "prefix_synonyms": [ "TubercuList" @@ -13705,6 +17166,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "mycobank", "uri_prefix": 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"https://n2t.net/ncit:", - "https://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#", - "https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI%20Thesaurus&code=", - "https://ncit.nci.nih.gov/ncitbrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&code=", - "https://purl.obolibrary.org/obo/NCIT_", - "https://www.ebi.ac.uk/ols/ontologies/ncit/terms?iri=http://purl.obolibrary.org/obo/NCIT_" - ] - }, - { - "prefix": "NCRO", - "uri_prefix": "http://purl.obolibrary.org/obo/NCRO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/NCRO:", - "http://bioregistry.io/ncro:", - "http://www.ebi.ac.uk/ols/ontologies/ncro/terms?iri=http://purl.obolibrary.org/obo/NCRO_", - "https://bioregistry.io/NCRO:", - "https://bioregistry.io/ncro:", - "https://purl.obolibrary.org/obo/NCRO_", - "https://www.ebi.ac.uk/ols/ontologies/ncro/terms?iri=http://purl.obolibrary.org/obo/NCRO_" - ] - }, - { + "pattern": "^\\d+\\-\\d+\\-\\d+$", "prefix": "ndc", "uri_prefix": "http://www.hipaaspace.com/Medical_Billing/Coding/National.Drug.Codes/", "uri_prefix_synonyms": [ @@ -14259,6 +17474,7 @@ ] }, { + "pattern": "^\\d{6}$", "prefix": "nddf", "uri_prefix": "http://purl.bioontology.org/ontology/NDDF/", "uri_prefix_synonyms": [ @@ -14277,6 +17493,7 @@ ] }, { + "pattern": "^N[0-9]{10}$", "prefix": "ndfrt", "prefix_synonyms": [ "NUI", @@ -14311,6 +17528,7 @@ ] }, { + "pattern": "^[a-z]{3}-[a-km-z0-9]{7}$", "prefix": "nemo", "uri_prefix": "https://assets.nemoarchive.org/", "uri_prefix_synonyms": [ @@ -14333,6 +17551,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "neurolex", "prefix_synonyms": [ "NLX", @@ -14360,6 +17579,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "neuromorpho", "uri_prefix": "http://neuromorpho.org/neuron_info.jsp?neuron_name=", "uri_prefix_synonyms": [ @@ -14379,6 +17599,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "neuronames", "prefix_synonyms": [ "neuroname" @@ -14393,6 +17614,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "neurondb", "uri_prefix": "http://senselab.med.yale.edu/NeuronDB/NeuronProp.aspx?id=", "uri_prefix_synonyms": [ @@ -14410,6 +17632,7 @@ ] }, { + "pattern": "^[1-9][0-9]*$", "prefix": "neurovault.collection", "uri_prefix": "https://neurovault.org/collections/", "uri_prefix_synonyms": [ @@ -14425,6 +17648,7 @@ ] }, { + "pattern": "^[1-9][0-9]*$", "prefix": "neurovault.image", "uri_prefix": "https://neurovault.org/images/", "uri_prefix_synonyms": [ @@ -14440,6 +17664,7 @@ ] }, { + "pattern": "^[A-Za-z0-9]+$", "prefix": "nextdb", "uri_prefix": "http://nematode.lab.nig.ac.jp/db2/ShowCloneInfo.php?clone=", "uri_prefix_synonyms": [ @@ -14459,6 +17684,7 @@ ] }, { + "pattern": "^NX_\\w+$", "prefix": "nextprot", "prefix_synonyms": [ "NXP" @@ -14481,6 +17707,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nextprot.family", "prefix_synonyms": [ "NXPFA" @@ -14495,28 +17722,7 @@ ] }, { - "prefix": "nfdi4chem.cao", - "uri_prefix": "http://champ-project.org/images/ontology/cao.owl#CAO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/nfdi4chem.cao:", - "https://bioregistry.io/nfdi4chem.cao:", - "https://champ-project.org/images/ontology/cao.owl#CAO_" - ] - }, - { - "prefix": "NGBO", - "uri_prefix": "http://purl.obolibrary.org/obo/NGBO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/NGBO:", - "http://bioregistry.io/ngbo:", - "http://www.ebi.ac.uk/ols/ontologies/ngbo/terms?iri=http://purl.obolibrary.org/obo/NGBO_", - "https://bioregistry.io/NGBO:", - "https://bioregistry.io/ngbo:", - "https://purl.obolibrary.org/obo/NGBO_", - "https://www.ebi.ac.uk/ols/ontologies/ngbo/terms?iri=http://purl.obolibrary.org/obo/NGBO_" - ] - }, - { + "pattern": "^GLDS-\\d+$", "prefix": "ngl", "uri_prefix": "https://genelab-data.ndc.nasa.gov/genelab/accession/", "uri_prefix_synonyms": [ @@ -14541,6 +17747,7 @@ ] }, { + "pattern": "^\\w\\d{4}\\w\\d{2}(\\-[35])?$", "prefix": "niaest", "uri_prefix": "http://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=", "uri_prefix_synonyms": [ @@ -14549,37 +17756,25 @@ "http://identifiers.org/niaest/", "http://identifiers.org/niaest:", "http://n2t.net/niaest:", - "https://bio2rdf.org/niaest:", - "https://bioregistry.io/niaest:", - "https://identifiers.org/niaest/", - "https://identifiers.org/niaest:", - "https://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=", - "https://n2t.net/niaest:" - ] - }, - { - "prefix": "NIF_CELL", - "uri_prefix": "http://purl.obolibrary.org/obo/NIF_CELL_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/NIF_CELL:", - "http://bioregistry.io/nif.cell:", - "https://bioregistry.io/NIF_CELL:", - "https://bioregistry.io/nif.cell:", - "https://purl.obolibrary.org/obo/NIF_CELL_" + "https://bio2rdf.org/niaest:", + "https://bioregistry.io/niaest:", + "https://identifiers.org/niaest/", + "https://identifiers.org/niaest:", + "https://lgsun.grc.nia.nih.gov/cgi-bin/pro3?sname1=", + "https://n2t.net/niaest:" ] }, { - "prefix": "NIF_DYSFUNCTION", - "uri_prefix": "http://purl.obolibrary.org/obo/NIF_DYSFUNCTION_", + "prefix": "niaid.chemdb", + "uri_prefix": "http://chemdb.niaid.nih.gov/CompoundDetails.aspx?AIDSNO=", "uri_prefix_synonyms": [ - "http://bioregistry.io/NIF_DYSFUNCTION:", - "http://bioregistry.io/nif.dysfunction:", - "https://bioregistry.io/NIF_DYSFUNCTION:", - "https://bioregistry.io/nif.dysfunction:", - "https://purl.obolibrary.org/obo/NIF_DYSFUNCTION_" + "http://bioregistry.io/niaid.chemdb:", + "https://bioregistry.io/niaid.chemdb:", + "https://chemdb.niaid.nih.gov/CompoundDetails.aspx?AIDSNO=" ] }, { + "pattern": "^\\d+$", "prefix": "nif.ext", "prefix_synonyms": [ "NIFEXT" @@ -14594,17 +17789,7 @@ ] }, { - "prefix": "NIF_GROSSANATOMY", - "uri_prefix": "http://purl.obolibrary.org/obo/NIF_GROSSANATOMY_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/NIF_GROSSANATOMY:", - "http://bioregistry.io/nif.grossanatomy:", - "https://bioregistry.io/NIF_GROSSANATOMY:", - "https://bioregistry.io/nif.grossanatomy:", - "https://purl.obolibrary.org/obo/NIF_GROSSANATOMY_" - ] - }, - { + "pattern": "^BAMSC\\d+$", "prefix": "nif.std", "prefix_synonyms": [ "NIFSTD" @@ -14628,6 +17813,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nihreporter.project", "uri_prefix": "https://reporter.nih.gov/project-details/", "uri_prefix_synonyms": [ @@ -14636,6 +17822,15 @@ "https://bioregistry.io/nihreporter.project:" ] }, + { + "prefix": "nist.codata", + "uri_prefix": "http://physics.nist.gov/cgi-bin/cuu/Value?", + "uri_prefix_synonyms": [ + "http://bioregistry.io/nist.codata:", + "https://bioregistry.io/nist.codata:", + "https://physics.nist.gov/cgi-bin/cuu/Value?" + ] + }, { "prefix": "nkos", "uri_prefix": "http://w3id.org/nkos/", @@ -14646,6 +17841,7 @@ ] }, { + "pattern": "^[0-9]+$", "prefix": "nlfff", "uri_prefix": "http://database.deepsolar.space:18080/dbs/nlfff/", "uri_prefix_synonyms": [ @@ -14659,6 +17855,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlm", "uri_prefix": "https://www.ncbi.nlm.nih.gov/nlmcatalog/", "uri_prefix_synonyms": [ @@ -14668,6 +17865,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.anat", "uri_prefix": "http://uri.neuinfo.org/nif/nifstd/nlx_anat_", "uri_prefix_synonyms": [ @@ -14677,6 +17875,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.br", "prefix_synonyms": [ "NLXBR" @@ -14691,6 +17890,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.cell", "prefix_synonyms": [ "NLXCELL" @@ -14705,6 +17905,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.chem", "prefix_synonyms": [ "NLXCHEM" @@ -14719,6 +17920,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.dys", "uri_prefix": "http://uri.neuinfo.org/nif/nifstd/nlx_dys_", "uri_prefix_synonyms": [ @@ -14728,6 +17930,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.func", "prefix_synonyms": [ "NLXFUNC" @@ -14742,6 +17945,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.inv", "prefix_synonyms": [ "NLXINV" @@ -14756,6 +17960,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.mol", "prefix_synonyms": [ "NLXMOL" @@ -14770,6 +17975,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.oen", "prefix_synonyms": [ "NLXOEN" @@ -14784,6 +17990,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.org", "prefix_synonyms": [ "NLXORG" @@ -14798,6 +18005,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.qual", "prefix_synonyms": [ "NLXQUAL" @@ -14812,6 +18020,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.res", "prefix_synonyms": [ "NLXRES" @@ -14826,6 +18035,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nlx.sub", "prefix_synonyms": [ "NLXSUB", @@ -14843,14 +18053,17 @@ ] }, { + "pattern": "^.{2,}$", "prefix": "nmdc", - "uri_prefix": "https://drs.microbiomedata.org/objects/", + "uri_prefix": "https://w3id.org/nmdc/", "uri_prefix_synonyms": [ "http://bioregistry.io/nmdc:", "http://drs.microbiomedata.org/objects/", "http://identifiers.org/nmdc/", "http://identifiers.org/nmdc:", + "http://w3id.org/nmdc/", "https://bioregistry.io/nmdc:", + "https://drs.microbiomedata.org/objects/", "https://identifiers.org/nmdc/", "https://identifiers.org/nmdc:" ] @@ -14867,36 +18080,7 @@ ] }, { - "prefix": "NMR", - "prefix_synonyms": [ - "nmrcv" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/NMR_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/nmr:", - "http://bioregistry.io/NMR:", - "http://bioregistry.io/nmr:", - "http://bioregistry.io/nmrcv:", - "http://identifiers.org/NMR/", - "http://identifiers.org/NMR:", - "http://identifiers.org/nmr/NMR:", - "http://n2t.net/nmr:", - "http://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?iri=http://purl.obolibrary.org/obo/NMR_", - "http://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?short_form=NMR:", - "https://bio2rdf.org/nmr:", - "https://bioregistry.io/NMR:", - "https://bioregistry.io/nmr:", - "https://bioregistry.io/nmrcv:", - "https://identifiers.org/NMR/", - "https://identifiers.org/NMR:", - "https://identifiers.org/nmr/NMR:", - "https://n2t.net/nmr:", - "https://purl.obolibrary.org/obo/NMR_", - "https://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?iri=http://purl.obolibrary.org/obo/NMR_", - "https://www.ebi.ac.uk/ols/ontologies/nmrcv/terms?short_form=NMR:" - ] - }, - { + "pattern": "^[0-9]+$", "prefix": "nmrshiftdb2", "uri_prefix": "https://nmrshiftdb.nmr.uni-koeln.de/molecule/", "uri_prefix_synonyms": [ @@ -14910,6 +18094,7 @@ ] }, { + "pattern": "^[a-z]+(\\-[a-z]+)*$", "prefix": "noaa", "uri_prefix": "https://www.fisheries.noaa.gov/species/", "uri_prefix_synonyms": [ @@ -14919,19 +18104,17 @@ ] }, { - "prefix": "NOMEN", - "uri_prefix": "http://purl.obolibrary.org/obo/NOMEN_", + "pattern": "^\\d*$", + "prefix": "noaa.cameo", + "uri_prefix": "https://cameochemicals.noaa.gov/chemical/", "uri_prefix_synonyms": [ - "http://bioregistry.io/NOMEN:", - "http://bioregistry.io/nomen:", - "http://www.ebi.ac.uk/ols/ontologies/nomen/terms?iri=http://purl.obolibrary.org/obo/NOMEN_", - "https://bioregistry.io/NOMEN:", - "https://bioregistry.io/nomen:", - "https://purl.obolibrary.org/obo/NOMEN_", - "https://www.ebi.ac.uk/ols/ontologies/nomen/terms?iri=http://purl.obolibrary.org/obo/NOMEN_" + "http://bioregistry.io/noaa.cameo:", + "http://cameochemicals.noaa.gov/chemical/", + "https://bioregistry.io/noaa.cameo:" ] }, { + "pattern": "^\\d+$", "prefix": "noncodev3", "uri_prefix": "http://www.noncode.org/NONCODERv3/ncrna.php?ncid=", "uri_prefix_synonyms": [ @@ -14949,6 +18132,7 @@ ] }, { + "pattern": "^NONHSAG\\d{5}$", "prefix": "noncodev4.gene", "uri_prefix": "http://www.bioinfo.org/NONCODEv4/show_gene.php?id=", "uri_prefix_synonyms": [ @@ -14964,6 +18148,7 @@ ] }, { + "pattern": "^NONHSAT\\d{6}$", "prefix": "noncodev4.rna", "uri_prefix": "http://www.bioinfo.org/NONCODEv4/show_rna.php?id=", "uri_prefix_synonyms": [ @@ -14979,6 +18164,7 @@ ] }, { + "pattern": "^NOR\\d+$", "prefix": "norine", "uri_prefix": "http://bioinfo.lifl.fr/norine/result.jsp?ID=", "uri_prefix_synonyms": [ @@ -15005,6 +18191,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "npo", "uri_prefix": "http://purl.bioontology.org/ontology/npo#NPO_", "uri_prefix_synonyms": [ @@ -15014,6 +18201,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nsc", "uri_prefix": "https://dtp.cancer.gov/dtpstandard/servlet/ChemData?searchtype=NSC&searchlist=", "uri_prefix_synonyms": [ @@ -15023,6 +18211,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "nsf.award", "uri_prefix": "https://www.nsf.gov/awardsearch/showAward?AWD_ID=", "uri_prefix_synonyms": [ @@ -15032,6 +18221,7 @@ ] }, { + "pattern": "^\\w+\\_\\w+$", "prefix": "nucleardb", "prefix_synonyms": [ "nuclearbd" @@ -15053,6 +18243,16 @@ "https://www.receptors.org/nucleardb/proteins/" ] }, + { + "pattern": "^\\d+$", + "prefix": "nxr", + "uri_prefix": "https://scicrunch.org/resolver/RRID:NXR_", + "uri_prefix_synonyms": [ + "http://bioregistry.io/nxr:", + "http://scicrunch.org/resolver/RRID:NXR_", + "https://bioregistry.io/nxr:" + ] + }, { "prefix": "oa", "uri_prefix": "http://www.w3.org/ns/oa#", @@ -15063,45 +18263,7 @@ ] }, { - "prefix": "OAE", - "uri_prefix": "http://purl.obolibrary.org/obo/OAE_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OAE:", - "http://bioregistry.io/oae:", - "http://www.ebi.ac.uk/ols/ontologies/oae/terms?iri=http://purl.obolibrary.org/obo/OAE_", - "https://bioregistry.io/OAE:", - "https://bioregistry.io/oae:", - "https://purl.obolibrary.org/obo/OAE_", - "https://www.ebi.ac.uk/ols/ontologies/oae/terms?iri=http://purl.obolibrary.org/obo/OAE_" - ] - }, - { - "prefix": "OARCS", - "uri_prefix": "http://purl.obolibrary.org/obo/OARCS_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OARCS:", - "http://bioregistry.io/oarcs:", - "http://www.ebi.ac.uk/ols/ontologies/oarcs/terms?iri=http://purl.obolibrary.org/obo/OARCS_", - "https://bioregistry.io/OARCS:", - "https://bioregistry.io/oarcs:", - "https://purl.obolibrary.org/obo/OARCS_", - "https://www.ebi.ac.uk/ols/ontologies/oarcs/terms?iri=http://purl.obolibrary.org/obo/OARCS_" - ] - }, - { - "prefix": "OBA", - "uri_prefix": "http://purl.obolibrary.org/obo/OBA_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OBA:", - "http://bioregistry.io/oba:", - "http://www.ebi.ac.uk/ols/ontologies/oba/terms?iri=http://purl.obolibrary.org/obo/OBA_", - "https://bioregistry.io/OBA:", - "https://bioregistry.io/oba:", - "https://purl.obolibrary.org/obo/OBA_", - "https://www.ebi.ac.uk/ols/ontologies/oba/terms?iri=http://purl.obolibrary.org/obo/OBA_" - ] - }, - { + "pattern": "^\\w+$", "prefix": "oban", "uri_prefix": "http://purl.org/oban/", "uri_prefix_synonyms": [ @@ -15111,55 +18273,11 @@ ] }, { - "prefix": "OBCS", - "uri_prefix": "http://purl.obolibrary.org/obo/OBCS_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OBCS:", - "http://bioregistry.io/obcs:", - "http://www.ebi.ac.uk/ols/ontologies/obcs/terms?iri=http://purl.obolibrary.org/obo/OBCS_", - "https://bioregistry.io/OBCS:", - "https://bioregistry.io/obcs:", - "https://purl.obolibrary.org/obo/OBCS_", - "https://www.ebi.ac.uk/ols/ontologies/obcs/terms?iri=http://purl.obolibrary.org/obo/OBCS_" - ] - }, - { - "prefix": "OBI", - "uri_prefix": "http://purl.obolibrary.org/obo/OBI_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/obi:", - "http://bioregistry.io/OBI:", - "http://bioregistry.io/obi:", - "http://identifiers.org/OBI/", - "http://identifiers.org/OBI:", - "http://identifiers.org/obi/OBI:", - "http://n2t.net/obi:", - "http://www.ebi.ac.uk/ols/ontologies/obi/terms?iri=http://purl.obolibrary.org/obo/OBI_", - "https://bio2rdf.org/obi:", - "https://bioregistry.io/OBI:", - "https://bioregistry.io/obi:", - "https://identifiers.org/OBI/", - "https://identifiers.org/OBI:", - "https://identifiers.org/obi/OBI:", - "https://n2t.net/obi:", - "https://purl.obolibrary.org/obo/OBI_", - "https://www.ebi.ac.uk/ols/ontologies/obi/terms?iri=http://purl.obolibrary.org/obo/OBI_" - ] - }, - { - "prefix": "OBIB", - "uri_prefix": "http://purl.obolibrary.org/obo/OBIB_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OBIB:", - "http://bioregistry.io/obib:", - "http://www.ebi.ac.uk/ols/ontologies/obib/terms?iri=http://purl.obolibrary.org/obo/OBIB_", - "https://bioregistry.io/OBIB:", - "https://bioregistry.io/obib:", - "https://purl.obolibrary.org/obo/OBIB_", - "https://www.ebi.ac.uk/ols/ontologies/obib/terms?iri=http://purl.obolibrary.org/obo/OBIB_" - ] + "prefix": "obo", + "uri_prefix": "http://purl.obolibrary.org/obo/" }, { + "pattern": "^\\w+$", "prefix": "oboInOwl", "prefix_synonyms": [ "oboformat", @@ -15179,6 +18297,7 @@ ] }, { + "pattern": "^AC[0-9]{8}$", "prefix": "obv", "uri_prefix": "https://permalink.obvsg.at/", "uri_prefix_synonyms": [ @@ -15192,6 +18311,7 @@ ] }, { + "pattern": "^[a-z][a-z]/[0-9]+$", "prefix": "occ", "uri_prefix": "https://w3id.org/oc/corpus/", "uri_prefix_synonyms": [ @@ -15207,6 +18327,7 @@ ] }, { + "pattern": "^0[1-9]+0[0-9]+-0[1-9]+0[0-9]+$", "prefix": "oci", "uri_prefix": "https://w3id.org/oc/oci/", "uri_prefix_synonyms": [ @@ -15222,6 +18343,7 @@ ] }, { + "pattern": "^[0-9]{12}$", "prefix": "ocid", "uri_prefix": "https://ocid.ontochem.com/prefname?ocid=", "uri_prefix_synonyms": [ @@ -15237,6 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"http://purl.obolibrary.org/obo/OGMS_", + "https://n2t.net/oclc:" + ] + }, + { + "pattern": "^[A-Za-z0-9]+$", + "prefix": "odam", + "uri_prefix": "https://identifiers.org/odam:", "uri_prefix_synonyms": [ - "http://bioregistry.io/OGMS:", - "http://bioregistry.io/ogms/OMRE:", - "http://bioregistry.io/ogms:", - "http://www.ebi.ac.uk/ols/ontologies/ogms/terms?iri=http://purl.obolibrary.org/obo/OGMS_", - "https://bioregistry.io/OGMS:", - "https://bioregistry.io/ogms/OMRE:", - "https://bioregistry.io/ogms:", - "https://purl.obolibrary.org/obo/OGMS_", - "https://www.ebi.ac.uk/ols/ontologies/ogms/terms?iri=http://purl.obolibrary.org/obo/OGMS_" + "http://bioregistry.io/odam:", + "http://identifiers.org/odam/", + "http://identifiers.org/odam:", + "https://bioregistry.io/odam:", + "https://identifiers.org/odam/" ] }, { - "prefix": "OGSF", - "uri_prefix": "http://purl.obolibrary.org/obo/OGSF_", + "pattern": "^[0-9]*$", + "prefix": "odc.sci", + "uri_prefix": "https://odc-sci.org/data/", 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"https://bioregistry.io/OHD:", - "https://bioregistry.io/ohd:", - "https://purl.obolibrary.org/obo/OHD_", - "https://www.ebi.ac.uk/ols/ontologies/ohd/terms?iri=http://purl.obolibrary.org/obo/OHD_" + "http://bioregistry.io/odc.tbi:", + "http://identifiers.org/odc.tbi/", + "http://identifiers.org/odc.tbi:", + "http://odc-tbi.org/data/", + "https://bioregistry.io/odc.tbi:", + "https://identifiers.org/odc.tbi/", + "https://identifiers.org/odc.tbi:" ] }, { - "prefix": "OHMI", - "uri_prefix": "http://purl.obolibrary.org/obo/OHMI_", + "pattern": "^\\d+$", + "prefix": "odor", + "uri_prefix": "https://identifiers.org/odor:", "uri_prefix_synonyms": [ - "http://bioregistry.io/OHMI:", - "http://bioregistry.io/ohmi:", - "http://www.ebi.ac.uk/ols/ontologies/ohmi/terms?iri=http://purl.obolibrary.org/obo/OHMI_", - "https://bioregistry.io/OHMI:", - "https://bioregistry.io/ohmi:", - "https://purl.obolibrary.org/obo/OHMI_", - "https://www.ebi.ac.uk/ols/ontologies/ohmi/terms?iri=http://purl.obolibrary.org/obo/OHMI_" + "http://bioregistry.io/odor:", + "http://identifiers.org/odor/", + "http://identifiers.org/odor:", + "http://n2t.net/odor:", + "https://bioregistry.io/odor:", + "https://identifiers.org/odor/", + "https://n2t.net/odor:" ] }, { - "prefix": "OHPI", - "uri_prefix": "http://purl.obolibrary.org/obo/OHPI_", + "prefix": "odrl", + "uri_prefix": "http://www.w3.org/ns/odrl/2/", "uri_prefix_synonyms": [ - "http://bioregistry.io/OHPI:", - "http://bioregistry.io/ohpi:", - "http://www.ebi.ac.uk/ols/ontologies/ohpi/terms?iri=http://purl.obolibrary.org/obo/OHPI_", - "https://bioregistry.io/OHPI:", - "https://bioregistry.io/ohpi:", - "https://purl.obolibrary.org/obo/OHPI_", - "https://www.ebi.ac.uk/ols/ontologies/ohpi/terms?iri=http://purl.obolibrary.org/obo/OHPI_" + "http://bioregistry.io/odrl:", + "https://bioregistry.io/odrl:", + "https://www.w3.org/ns/odrl/2/" ] }, { + "pattern": "^[\\d.]+$", "prefix": "oid", "uri_prefix": "http://oid-info.com/get/", "uri_prefix_synonyms": [ @@ -15430,19 +18457,6 @@ "https://www.oid-info.com/get/" ] }, - { - "prefix": "OlatDv", - "uri_prefix": "http://purl.obolibrary.org/obo/OlatDv_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OlatDv:", - "http://bioregistry.io/olatdv:", - "http://www.ebi.ac.uk/ols/ontologies/olatdv/terms?iri=http://purl.obolibrary.org/obo/OlatDv_", - "https://bioregistry.io/OlatDv:", - "https://bioregistry.io/olatdv:", - "https://purl.obolibrary.org/obo/OlatDv_", - "https://www.ebi.ac.uk/ols/ontologies/olatdv/terms?iri=http://purl.obolibrary.org/obo/OlatDv_" - ] - }, { "prefix": "om", "uri_prefix": "http://www.ontology-of-units-of-measure.org/resource/om-2/", @@ -15453,6 +18467,7 @@ ] }, { + "pattern": "^[A-Z]+$", "prefix": "oma.grp", "uri_prefix": "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1=", "uri_prefix_synonyms": [ @@ -15468,6 +18483,7 @@ ] }, { + "pattern": "^[0-9]{7}(\\.[0-9a-z.]+)?(_[0-9]+)?$", "prefix": "oma.hog", "uri_prefix": "https://omabrowser.org/oma/hog/HOG:", "uri_prefix_synonyms": [ @@ -15483,6 +18499,7 @@ ] }, { + "pattern": "^[A-Z0-9]{5}\\d+$", "prefix": "oma.protein", "uri_prefix": "https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayEntry&p1=", "uri_prefix_synonyms": [ @@ -15498,6 +18515,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "omia", "uri_prefix": "https://omia.org/OMIA", "uri_prefix_synonyms": [ @@ -15517,19 +18535,7 @@ ] }, { - "prefix": "OMIABIS", - "uri_prefix": "http://purl.obolibrary.org/obo/OMIABIS_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OMIABIS:", - "http://bioregistry.io/omiabis:", - "http://www.ebi.ac.uk/ols/ontologies/omiabis/terms?iri=http://purl.obolibrary.org/obo/OMIABIS_", - "https://bioregistry.io/OMIABIS:", - "https://bioregistry.io/omiabis:", - "https://purl.obolibrary.org/obo/OMIABIS_", - "https://www.ebi.ac.uk/ols/ontologies/omiabis/terms?iri=http://purl.obolibrary.org/obo/OMIABIS_" - ] - }, - { + "pattern": "^[a-z][a-z]/06[1-9]*0[1-9][0-9]*$", "prefix": "omid", "uri_prefix": "https://w3id.org/oc/meta/", "uri_prefix_synonyms": [ @@ -15543,6 +18549,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "omim", "prefix_synonyms": [ "OMIM", @@ -15582,6 +18589,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "omim.ps", "prefix_synonyms": [ "MIMPS", @@ -15607,42 +18615,7 @@ ] }, { - "prefix": "OMIT", - "uri_prefix": "http://purl.obolibrary.org/obo/OMIT_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OMIT:", - "http://bioregistry.io/omit:", - "http://identifiers.org/omit/", - "http://identifiers.org/omit:", - "http://n2t.net/omit:", - "http://www.ebi.ac.uk/ols/ontologies/omit/terms?iri=http://purl.obolibrary.org/obo/OMIT_", - "http://www.ebi.ac.uk/ols/ontologies/omit/terms?short_form=OMIT_", - "http://www.ebi.ac.uk/ols4/ontologies/omit/terms?short_form=OMIT_", - "https://bioregistry.io/OMIT:", - "https://bioregistry.io/omit:", - "https://identifiers.org/omit/", - "https://identifiers.org/omit:", - "https://n2t.net/omit:", - "https://purl.obolibrary.org/obo/OMIT_", - "https://www.ebi.ac.uk/ols/ontologies/omit/terms?iri=http://purl.obolibrary.org/obo/OMIT_", - "https://www.ebi.ac.uk/ols/ontologies/omit/terms?short_form=OMIT_", - "https://www.ebi.ac.uk/ols4/ontologies/omit/terms?short_form=OMIT_" - ] - }, - { - "prefix": "OMO", - "uri_prefix": "http://purl.obolibrary.org/obo/OMO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OMO:", - "http://bioregistry.io/omo:", - "http://www.ebi.ac.uk/ols/ontologies/omo/terms?iri=http://purl.obolibrary.org/obo/OMO_", - "https://bioregistry.io/OMO:", - "https://bioregistry.io/omo:", - "https://purl.obolibrary.org/obo/OMO_", - "https://www.ebi.ac.uk/ols/ontologies/omo/terms?iri=http://purl.obolibrary.org/obo/OMO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "omop", "prefix_synonyms": [ "OMOP" @@ -15660,32 +18633,6 @@ "https://data.ohdsi.org/concept/" ] }, - { - "prefix": "OMP", - "uri_prefix": "http://purl.obolibrary.org/obo/OMP_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OMP:", - "http://bioregistry.io/omp:", - "http://www.ebi.ac.uk/ols/ontologies/omp/terms?iri=http://purl.obolibrary.org/obo/OMP_", - "https://bioregistry.io/OMP:", - "https://bioregistry.io/omp:", - "https://purl.obolibrary.org/obo/OMP_", - "https://www.ebi.ac.uk/ols/ontologies/omp/terms?iri=http://purl.obolibrary.org/obo/OMP_" - ] - }, - { - "prefix": "OMRSE", - "uri_prefix": "http://purl.obolibrary.org/obo/OMRSE_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OMRSE:", - "http://bioregistry.io/omrse:", - "http://www.ebi.ac.uk/ols/ontologies/omrse/terms?iri=http://purl.obolibrary.org/obo/OMRSE_", - "https://bioregistry.io/OMRSE:", - "https://bioregistry.io/omrse:", - "https://purl.obolibrary.org/obo/OMRSE_", - "https://www.ebi.ac.uk/ols/ontologies/omrse/terms?iri=http://purl.obolibrary.org/obo/OMRSE_" - ] - }, { "prefix": "oncotree", "uri_prefix": "http://oncotree.mskcc.org/api/tumorTypes/search/code/", @@ -15696,32 +18643,7 @@ ] }, { - "prefix": "ONE", - "uri_prefix": "http://purl.obolibrary.org/obo/ONE_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ONE:", - "http://bioregistry.io/one:", - "http://www.ebi.ac.uk/ols/ontologies/one/terms?iri=http://purl.obolibrary.org/obo/ONE_", - "https://bioregistry.io/ONE:", - "https://bioregistry.io/one:", - "https://purl.obolibrary.org/obo/ONE_", - "https://www.ebi.ac.uk/ols/ontologies/one/terms?iri=http://purl.obolibrary.org/obo/ONE_" - ] - }, - { - "prefix": "ONS", - "uri_prefix": "http://purl.obolibrary.org/obo/ONS_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ONS:", - "http://bioregistry.io/ons:", - "http://www.ebi.ac.uk/ols/ontologies/ons/terms?iri=http://purl.obolibrary.org/obo/ONS_", - "https://bioregistry.io/ONS:", - "https://bioregistry.io/ons:", - "https://purl.obolibrary.org/obo/ONS_", - "https://www.ebi.ac.uk/ols/ontologies/ons/terms?iri=http://purl.obolibrary.org/obo/ONS_" - ] - }, - { + "pattern": "^\\d{7}$", "prefix": "ontie", "uri_prefix": "https://ontology.iedb.org/ontology/ONTIE_", "uri_prefix_synonyms": [ @@ -15731,45 +18653,7 @@ ] }, { - "prefix": "ONTOAVIDA", - "uri_prefix": "http://purl.obolibrary.org/obo/ONTOAVIDA_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ONTOAVIDA:", - "http://bioregistry.io/ontoavida:", - "http://www.ebi.ac.uk/ols/ontologies/ontoavida/terms?iri=http://purl.obolibrary.org/obo/ONTOAVIDA_", - "https://bioregistry.io/ONTOAVIDA:", - "https://bioregistry.io/ontoavida:", - "https://purl.obolibrary.org/obo/ONTOAVIDA_", - "https://www.ebi.ac.uk/ols/ontologies/ontoavida/terms?iri=http://purl.obolibrary.org/obo/ONTOAVIDA_" - ] - }, - { - "prefix": "ONTONEO", - "uri_prefix": "http://purl.obolibrary.org/obo/ONTONEO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ONTONEO:", - "http://bioregistry.io/ontoneo:", - "http://www.ebi.ac.uk/ols/ontologies/ontoneo/terms?iri=http://purl.obolibrary.org/obo/ONTONEO_", - "https://bioregistry.io/ONTONEO:", - "https://bioregistry.io/ontoneo:", - "https://purl.obolibrary.org/obo/ONTONEO_", - "https://www.ebi.ac.uk/ols/ontologies/ontoneo/terms?iri=http://purl.obolibrary.org/obo/ONTONEO_" - ] - }, - { - "prefix": "OOSTT", - "uri_prefix": "http://purl.obolibrary.org/obo/OOSTT_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OOSTT:", - "http://bioregistry.io/oostt:", - "http://www.ebi.ac.uk/ols/ontologies/oostt/terms?iri=http://purl.obolibrary.org/obo/OOSTT_", - "https://bioregistry.io/OOSTT:", - "https://bioregistry.io/oostt:", - "https://purl.obolibrary.org/obo/OOSTT_", - "https://www.ebi.ac.uk/ols/ontologies/oostt/terms?iri=http://purl.obolibrary.org/obo/OOSTT_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "opb", "uri_prefix": "https://bioportal.bioontology.org/ontologies/OPB/?p=classes&conceptid=http%3A%2F%2Fbhi.washington.edu%2FOPB%23OPB_", "uri_prefix_synonyms": [ @@ -15791,28 +18675,17 @@ ] }, { + "pattern": "^[WAICV]\\d{2,}$", "prefix": "openalex", "uri_prefix": "https://openalex.org/", "uri_prefix_synonyms": [ "http://bioregistry.io/openalex:", - "http://openalex.org/", - "https://bioregistry.io/openalex:" - ] - }, - { - "prefix": "OPL", - "uri_prefix": "http://purl.obolibrary.org/obo/OPL_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OPL:", - "http://bioregistry.io/opl:", - "http://www.ebi.ac.uk/ols/ontologies/opl/terms?iri=http://purl.obolibrary.org/obo/OPL_", - "https://bioregistry.io/OPL:", - "https://bioregistry.io/opl:", - "https://purl.obolibrary.org/obo/OPL_", - "https://www.ebi.ac.uk/ols/ontologies/opl/terms?iri=http://purl.obolibrary.org/obo/OPL_" + "http://openalex.org/", + "https://bioregistry.io/openalex:" ] }, { + "pattern": "^[0-9][A-Za-z0-9]{3}$", "prefix": "opm", "uri_prefix": "http://opm.phar.umich.edu/protein.php?pdbid=", "uri_prefix_synonyms": [ @@ -15828,19 +18701,7 @@ ] }, { - "prefix": "OPMI", - "uri_prefix": "http://purl.obolibrary.org/obo/OPMI_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OPMI:", - "http://bioregistry.io/opmi:", - "http://www.ebi.ac.uk/ols/ontologies/opmi/terms?iri=http://purl.obolibrary.org/obo/OPMI_", - "https://bioregistry.io/OPMI:", - "https://bioregistry.io/opmi:", - "https://purl.obolibrary.org/obo/OPMI_", - "https://www.ebi.ac.uk/ols/ontologies/opmi/terms?iri=http://purl.obolibrary.org/obo/OPMI_" - ] - }, - { + "pattern": "^\\d{4}-\\d{4}-\\d{4}-\\d{3}(\\d|X)$", "prefix": "orcid", "prefix_synonyms": [ "ORCID", @@ -15866,6 +18727,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ordb", "uri_prefix": "http://senselab.med.yale.edu/ORDB/Data/", "uri_prefix_synonyms": [ @@ -15885,6 +18747,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "oridb.sacch", "uri_prefix": "http://cerevisiae.oridb.org/details.php?id=", "uri_prefix_synonyms": [ @@ -15900,6 +18763,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "oridb.schizo", "uri_prefix": "http://pombe.oridb.org/details.php?id=", "uri_prefix_synonyms": [ @@ -15915,19 +18779,7 @@ ] }, { - "prefix": "ORNASEQ", - "uri_prefix": "http://purl.obolibrary.org/obo/ORNASEQ_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ORNASEQ:", - "http://bioregistry.io/ornaseq:", - "http://www.ebi.ac.uk/ols/ontologies/ornaseq/terms?iri=http://purl.obolibrary.org/obo/ORNASEQ_", - "https://bioregistry.io/ORNASEQ:", - "https://bioregistry.io/ornaseq:", - "https://purl.obolibrary.org/obo/ORNASEQ_", - "https://www.ebi.ac.uk/ols/ontologies/ornaseq/terms?iri=http://purl.obolibrary.org/obo/ORNASEQ_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "orphanet", "prefix_synonyms": [ "ORPHA" @@ -15957,32 +18809,6 @@ "https://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=EN&Expert=" ] }, - { - "prefix": "orphanet.ordo", - "prefix_synonyms": [ - "ordo" - ], - "uri_prefix": "http://www.orpha.net/ORDO/Orphanet_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ordo:", - "http://bioregistry.io/orphanet.ordo:", - "http://identifiers.org/orphanet.ordo/", - "http://identifiers.org/orphanet.ordo/Orphanet_", - "http://identifiers.org/orphanet.ordo:", - "http://n2t.net/orphanet.ordo:", - "http://www.ebi.ac.uk/ols/ontologies/ordo/terms?iri=http://www.orpha.net/ORDO/", - "http://www.ebi.ac.uk/ols/ontologies/ordo/terms?short_form=", - "https://bioregistry.io/ordo:", - "https://bioregistry.io/orphanet.ordo:", - "https://identifiers.org/orphanet.ordo/", - "https://identifiers.org/orphanet.ordo/Orphanet_", - "https://identifiers.org/orphanet.ordo:", - "https://n2t.net/orphanet.ordo:", - "https://www.ebi.ac.uk/ols/ontologies/ordo/terms?iri=http://www.orpha.net/ORDO/", - "https://www.ebi.ac.uk/ols/ontologies/ordo/terms?short_form=", - "https://www.orpha.net/ORDO/Orphanet_" - ] - }, { "prefix": "orth", "uri_prefix": "http://purl.org/net/orth#", @@ -15993,6 +18819,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "oryzabase.gene", "uri_prefix": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/detail/", "uri_prefix_synonyms": [ @@ -16008,6 +18835,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "oryzabase.mutant", "uri_prefix": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/inducedMutationLine/detail/", "uri_prefix_synonyms": [ @@ -16023,6 +18851,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "oryzabase.reference", "uri_prefix": "https://shigen.nig.ac.jp/rice/oryzabase/reference/detail/", "uri_prefix_synonyms": [ @@ -16038,6 +18867,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "oryzabase.stage", "uri_prefix": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/detail/", "uri_prefix_synonyms": [ @@ -16053,6 +18883,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "oryzabase.strain", "uri_prefix": "http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/detail/", "uri_prefix_synonyms": [ @@ -16077,6 +18908,7 @@ ] }, { + "pattern": "^A[A-Z]+\\d+$", "prefix": "otl", "uri_prefix": "http://oryzatagline.cirad.fr/cgi-bin/general_mutant.pl?line=", "uri_prefix_synonyms": [ @@ -16096,6 +18928,7 @@ ] }, { + "pattern": "^[1-9]\\d*$", "prefix": "otol", "uri_prefix": "https://tree.opentreeoflife.org/taxonomy/browse?id=", "uri_prefix_synonyms": [ @@ -16104,19 +18937,6 @@ "https://bioregistry.io/otol:" ] }, - { - "prefix": "OVAE", - "uri_prefix": "http://purl.obolibrary.org/obo/OVAE_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/OVAE:", - "http://bioregistry.io/ovae:", - "http://www.ebi.ac.uk/ols/ontologies/ovae/terms?iri=http://purl.obolibrary.org/obo/OVAE_", - "https://bioregistry.io/OVAE:", - "https://bioregistry.io/ovae:", - "https://purl.obolibrary.org/obo/OVAE_", - "https://www.ebi.ac.uk/ols/ontologies/ovae/terms?iri=http://purl.obolibrary.org/obo/OVAE_" - ] - }, { "prefix": "owl", "uri_prefix": "http://www.w3.org/2002/07/owl#", @@ -16127,6 +18947,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "owlstar", "uri_prefix": "http://w3id.org/owlstar/", "uri_prefix_synonyms": [ @@ -16136,6 +18957,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "p3db.protein", "uri_prefix": "https://identifiers.org/p3db.protein:", "uri_prefix_synonyms": [ @@ -16153,6 +18975,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "p3db.site", "uri_prefix": "https://identifiers.org/p3db.site:", "uri_prefix_synonyms": [ @@ -16166,6 +18989,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "paleodb", "uri_prefix": "http://fossilworks.org/?a=taxonInfo&taxon_no=", "uri_prefix_synonyms": [ @@ -16185,6 +19009,7 @@ ] }, { + "pattern": "^PTHR\\d{5}(\\:SF\\d{1,3})?$", "prefix": "panther.family", "uri_prefix": "http://www.pantherdb.org/panther/family.do?clsAccession=", "uri_prefix_synonyms": [ @@ -16204,6 +19029,7 @@ ] }, { + "pattern": "^PTN\\d{9}$", "prefix": "panther.node", "uri_prefix": "http://www.pantree.org/node/annotationNode.jsp?id=", "uri_prefix_synonyms": [ @@ -16219,6 +19045,7 @@ ] }, { + "pattern": "^P\\d{5}$", "prefix": "panther.pathway", "uri_prefix": "http://www.pantherdb.org/pathway/pathwayDiagram.jsp?catAccession=", "uri_prefix_synonyms": [ @@ -16234,6 +19061,7 @@ ] }, { + "pattern": "^(G|P|U|C|S)\\d{5}$", "prefix": "panther.pthcmp", "uri_prefix": "http://www.pantherdb.org/pathway/pathCatDetail.do?clsAccession=", "uri_prefix_synonyms": [ @@ -16249,17 +19077,7 @@ ] }, { - "prefix": "PAO", - "uri_prefix": "http://purl.obolibrary.org/obo/PAO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PAO:", - "http://bioregistry.io/pao:", - "https://bioregistry.io/PAO:", - "https://bioregistry.io/pao:", - "https://purl.obolibrary.org/obo/PAO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "pass2", "uri_prefix": "http://caps.ncbs.res.in/cgi-bin/pass2//show_sf.py?sf_id=", "uri_prefix_synonyms": [ @@ -16279,6 +19097,7 @@ ] }, { + "pattern": "^(SMP|PW)\\d+$", "prefix": "pathbank", "uri_prefix": "https://pathbank.org/view/", "uri_prefix_synonyms": [ @@ -16310,6 +19129,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pathwaycommons", "uri_prefix": "http://www.pathwaycommons.org/pc/record2.do?id=", "uri_prefix_synonyms": [ @@ -16329,33 +19149,7 @@ ] }, { - "prefix": "PATO", - "uri_prefix": "http://purl.obolibrary.org/obo/PATO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/pato:", - "http://bioregistry.io/PATO:", - "http://bioregistry.io/pato:", - "http://identifiers.org/PATO/", - "http://identifiers.org/PATO:", - "http://identifiers.org/pato/PATO:", - "http://n2t.net/pato:", - "http://purl.bioontology.org/ontology/PATO/PATO:", - "http://purl.org/obo/owl/PATO#PATO_", - "http://www.ebi.ac.uk/ols/ontologies/pato/terms?iri=http://purl.obolibrary.org/obo/PATO_", - "https://bio2rdf.org/pato:", - "https://bioregistry.io/PATO:", - "https://bioregistry.io/pato:", - "https://identifiers.org/PATO/", - "https://identifiers.org/PATO:", - "https://identifiers.org/pato/PATO:", - "https://n2t.net/pato:", - "https://purl.bioontology.org/ontology/PATO/PATO:", - "https://purl.obolibrary.org/obo/PATO_", - "https://purl.org/obo/owl/PATO#PATO_", - "https://www.ebi.ac.uk/ols/ontologies/pato/terms?iri=http://purl.obolibrary.org/obo/PATO_" - ] - }, - { + "pattern": "^[a-z][a-zA-Z]+$", "prefix": "pav", "uri_prefix": "http://purl.org/pav/", "uri_prefix_synonyms": [ @@ -16365,6 +19159,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "paxdb.organism", "uri_prefix": "http://pax-db.org/#!species/", "uri_prefix_synonyms": [ @@ -16380,6 +19175,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "paxdb.protein", "uri_prefix": "http://pax-db.org/#!protein/", "uri_prefix_synonyms": [ @@ -16395,6 +19191,7 @@ ] }, { + "pattern": "^TF\\w+$", "prefix": "pazar", "uri_prefix": "http://www.pazar.info/cgi-bin/tf_search.cgi?geneID=", "uri_prefix_synonyms": [ @@ -16414,54 +19211,7 @@ ] }, { - "prefix": "PBA", - "uri_prefix": "https://biopragmatics.github.io/providers/pba/", - "uri_prefix_synonyms": [ - "http://biopragmatics.github.io/providers/pba/", - "http://bioregistry.io/PBA:", - "http://bioregistry.io/pba:", - "https://bioregistry.io/PBA:", - "https://bioregistry.io/pba:" - ] - }, - { - "prefix": "PCL", - "uri_prefix": "http://purl.obolibrary.org/obo/PCL_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PCL:", - "http://bioregistry.io/pcl:", - "http://www.ebi.ac.uk/ols/ontologies/pcl/terms?iri=http://purl.obolibrary.org/obo/PCL_", - "https://bioregistry.io/PCL:", - "https://bioregistry.io/pcl:", - "https://purl.obolibrary.org/obo/PCL_", - "https://www.ebi.ac.uk/ols/ontologies/pcl/terms?iri=http://purl.obolibrary.org/obo/PCL_" - ] - }, - { - "prefix": "PCO", - "uri_prefix": "http://purl.obolibrary.org/obo/PCO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PCO:", - "http://bioregistry.io/pco:", - "http://www.ebi.ac.uk/ols/ontologies/pco/terms?iri=http://purl.obolibrary.org/obo/PCO_", - "https://bioregistry.io/PCO:", - "https://bioregistry.io/pco:", - "https://purl.obolibrary.org/obo/PCO_", - "https://www.ebi.ac.uk/ols/ontologies/pco/terms?iri=http://purl.obolibrary.org/obo/PCO_" - ] - }, - { - "prefix": "PD_ST", - "uri_prefix": "http://purl.obolibrary.org/obo/PD_ST_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PD_ST:", - "http://bioregistry.io/pd_st:", - "https://bioregistry.io/PD_ST:", - "https://bioregistry.io/pd_st:", - "https://purl.obolibrary.org/obo/PD_ST_" - ] - }, - { + "pattern": "^[0-9][A-Za-z0-9]{3}$", "prefix": "pdb", "prefix_synonyms": [ "RCSB_PDB", @@ -16534,6 +19284,7 @@ ] }, { + "pattern": "^[A-Za-z0-9]+$", "prefix": "pdb.ligand", "prefix_synonyms": [ "PDB_CHEM_ID", @@ -16574,6 +19325,7 @@ ] }, { + "pattern": "^PDC\\d+$", "prefix": "pdc.study", "uri_prefix": "https://pdc.cancer.gov/pdc/study/", "uri_prefix_synonyms": [ @@ -16583,47 +19335,7 @@ ] }, { - "prefix": "PDRO", - "uri_prefix": "http://purl.obolibrary.org/obo/PDRO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PDRO:", - "http://bioregistry.io/pdro:", - "http://purl.obolibrary.org/obo/PDRO/PDRO.owl#PDRO_", - "http://www.ebi.ac.uk/ols/ontologies/pdro/terms?iri=http://purl.obolibrary.org/obo/PDRO_", - "https://bioregistry.io/PDRO:", - "https://bioregistry.io/pdro:", - "https://purl.obolibrary.org/obo/PDRO/PDRO.owl#PDRO_", - "https://purl.obolibrary.org/obo/PDRO_", - "https://www.ebi.ac.uk/ols/ontologies/pdro/terms?iri=http://purl.obolibrary.org/obo/PDRO_" - ] - }, - { - "prefix": "PdumDv", - "uri_prefix": "http://purl.obolibrary.org/obo/PdumDv_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PdumDv:", - "http://bioregistry.io/pdumdv:", - "http://www.ebi.ac.uk/ols/ontologies/pdumdv/terms?iri=http://purl.obolibrary.org/obo/PdumDv_", - "https://bioregistry.io/PdumDv:", - "https://bioregistry.io/pdumdv:", - "https://purl.obolibrary.org/obo/PdumDv_", - "https://www.ebi.ac.uk/ols/ontologies/pdumdv/terms?iri=http://purl.obolibrary.org/obo/PdumDv_" - ] - }, - { - "prefix": "PECO", - "uri_prefix": "http://purl.obolibrary.org/obo/PECO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PECO:", - "http://bioregistry.io/peco:", - "http://www.ebi.ac.uk/ols/ontologies/peco/terms?iri=http://purl.obolibrary.org/obo/PECO_", - "https://bioregistry.io/PECO:", - "https://bioregistry.io/peco:", - "https://purl.obolibrary.org/obo/PECO_", - "https://www.ebi.ac.uk/ols/ontologies/peco/terms?iri=http://purl.obolibrary.org/obo/PECO_" - ] - }, - { + "pattern": "^PED\\d{5}$", "prefix": "ped", "prefix_synonyms": [ "ped.ensemble" @@ -16646,6 +19358,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "peff", "uri_prefix": "https://biopragmatics.github.io/providers/peff/", "uri_prefix_synonyms": [ @@ -16655,6 +19368,7 @@ ] }, { + "pattern": "^N:package:[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$", "prefix": "pennsieve", "uri_prefix": "https://discover.pennsieve.io/package/", "uri_prefix_synonyms": [ @@ -16679,6 +19393,7 @@ ] }, { + "pattern": "^PAp[0-9]{8}$", "prefix": "peptideatlas", "uri_prefix": "https://db.systemsbiology.net/sbeams/cgi/PeptideAtlas/Summarize_Peptide?query=QUERY&searchForThis=", "uri_prefix_synonyms": [ @@ -16698,6 +19413,7 @@ ] }, { + "pattern": "^PASS\\d{5}$", "prefix": "peptideatlas.dataset", "uri_prefix": "http://www.peptideatlas.org/PASS/", "uri_prefix_synonyms": [ @@ -16722,6 +19438,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "peroxibase", "uri_prefix": "http://peroxibase.toulouse.inra.fr/browse/process/view_perox.php?id=", "uri_prefix_synonyms": [ @@ -16743,6 +19460,17 @@ ] }, { + "pattern": "^PRI\\d*$", + "prefix": "pesticideinfo", + "uri_prefix": "https://www.pesticideinfo.org/chemical/", + "uri_prefix_synonyms": [ + "http://bioregistry.io/pesticideinfo:", + "http://www.pesticideinfo.org/chemical/", + "https://bioregistry.io/pesticideinfo:" + ] + }, + { + "pattern": "^PF\\d{5}$", "prefix": "pfam", "prefix_synonyms": [ "PF", @@ -16778,6 +19506,7 @@ ] }, { + "pattern": "^CL\\d+$", "prefix": "pfam.clan", "uri_prefix": "https://www.ebi.ac.uk/interpro/set/pfam/", "uri_prefix_synonyms": [ @@ -16789,6 +19518,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pfr", "prefix_synonyms": [ "TDR" @@ -16803,17 +19533,7 @@ ] }, { - "prefix": "PGDSO", - "uri_prefix": "http://purl.obolibrary.org/obo/PGDSO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PGDSO:", - "http://bioregistry.io/pgdso:", - "https://bioregistry.io/PGDSO:", - "https://bioregistry.io/pgdso:", - "https://purl.obolibrary.org/obo/PGDSO_" - ] - }, - { + "pattern": "^PGS[0-9]{6}$", "prefix": "pgs", "uri_prefix": "https://www.pgscatalog.org/pgs/", "uri_prefix_synonyms": [ @@ -16827,6 +19547,7 @@ ] }, { + "pattern": "^\\w{3,15}[-_]\\w[\\w.-]{3,128}$", "prefix": "pgx", "prefix_synonyms": [ "Progenetix" @@ -16860,6 +19581,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pharmacodb.dataset", "uri_prefix": "https://pharmacodb.ca/datasets/", "uri_prefix_synonyms": [ @@ -16869,6 +19591,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pharmacodb.tissue", "uri_prefix": "https://pharmacodb.ca/tissues/", "uri_prefix_synonyms": [ @@ -16878,6 +19601,7 @@ ] }, { + "pattern": "^PA\\d+$", "prefix": "pharmgkb.disease", "uri_prefix": "http://www.pharmgkb.org/disease/", "uri_prefix_synonyms": [ @@ -16895,6 +19619,7 @@ ] }, { + "pattern": "^PA\\d+$", "prefix": "pharmgkb.drug", "uri_prefix": "http://www.pharmgkb.org/drug/", "uri_prefix_synonyms": [ @@ -16912,6 +19637,7 @@ ] }, { + "pattern": "^PA\\w+$", "prefix": "pharmgkb.gene", "uri_prefix": "http://www.pharmgkb.org/gene/", "uri_prefix_synonyms": [ @@ -16931,6 +19657,7 @@ ] }, { + "pattern": "^PA\\d+$", "prefix": "pharmgkb.pathways", "uri_prefix": "http://www.pharmgkb.org/pathway/", "uri_prefix_synonyms": [ @@ -16950,6 +19677,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "phenolexplorer", "uri_prefix": "http://phenol-explorer.eu/foods/", "uri_prefix_synonyms": [ @@ -16965,6 +19693,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "phenx", "prefix_synonyms": [ "phenxtoolkit" @@ -16979,19 +19708,7 @@ ] }, { - "prefix": "PHIPO", - "uri_prefix": "http://purl.obolibrary.org/obo/PHIPO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PHIPO:", - "http://bioregistry.io/phipo:", - "http://www.ebi.ac.uk/ols/ontologies/phipo/terms?iri=http://purl.obolibrary.org/obo/PHIPO_", - "https://bioregistry.io/PHIPO:", - "https://bioregistry.io/phipo:", - "https://purl.obolibrary.org/obo/PHIPO_", - "https://www.ebi.ac.uk/ols/ontologies/phipo/terms?iri=http://purl.obolibrary.org/obo/PHIPO_" - ] - }, - { + "pattern": "^\\w+$", "prefix": "phosphopoint.kinase", "uri_prefix": "https://identifiers.org/phosphopoint.kinase:", "uri_prefix_synonyms": [ @@ -17005,6 +19722,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "phosphopoint.protein", "uri_prefix": "https://identifiers.org/phosphopoint.protein:", "uri_prefix_synonyms": [ @@ -17018,6 +19736,7 @@ ] }, { + "pattern": "^\\d{5}$", "prefix": "phosphosite.protein", "uri_prefix": "http://www.phosphosite.org/proteinAction.do?id=", "uri_prefix_synonyms": [ @@ -17033,6 +19752,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "phosphosite.residue", "uri_prefix": "http://www.phosphosite.org/siteAction.do?id=", "uri_prefix_synonyms": [ @@ -17048,6 +19768,16 @@ ] }, { + "prefix": "phrr", + "uri_prefix": "https://registry.healthresearch.ph/index.php/registry?view=research&layout=details&cid=", + "uri_prefix_synonyms": [ + "http://bioregistry.io/phrr:", + "http://registry.healthresearch.ph/index.php/registry?view=research&layout=details&cid=", + "https://bioregistry.io/phrr:" + ] + }, + { + "pattern": "^\\w+$", "prefix": "phylomedb", "uri_prefix": "http://phylomedb.org/?seqid=", "uri_prefix_synonyms": [ @@ -17067,6 +19797,7 @@ ] }, { + "pattern": "^[A-Za-z0-9]+$", "prefix": "phytozome.locus", "prefix_synonyms": [ "JGI Phytozome" @@ -17098,6 +19829,7 @@ ] }, { + "pattern": "^\\b[0-9a-f]{8}\\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\\b[0-9a-f]{12}\\b$", "prefix": "pid.pathway", "prefix_synonyms": [ "pid" @@ -17120,6 +19852,7 @@ ] }, { + "pattern": "^TA\\d+$", "prefix": "piroplasma", "uri_prefix": "http://piroplasmadb.org/piro/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", "uri_prefix_synonyms": [ @@ -17135,6 +19868,7 @@ ] }, { + "pattern": "^PIRSF\\d{6}$", "prefix": "pirsf", "uri_prefix": "https://pir.georgetown.edu/cgi-bin/ipcSF?id=", "uri_prefix_synonyms": [ @@ -17145,54 +19879,30 @@ "http://n2t.net/pirsf:", "http://pir.georgetown.edu/cgi-bin/ipcSF?id=", "http://proteininformationresource.org/cgi-bin/ipcSF?id=", - "https://bio2rdf.org/pirsf:", - "https://bioregistry.io/pirsf:", - "https://identifiers.org/pirsf/", - "https://identifiers.org/pirsf:", - "https://n2t.net/pirsf:", - "https://proteininformationresource.org/cgi-bin/ipcSF?id=" - ] - }, - { - "prefix": "pkdb", - "uri_prefix": "https://pk-db.com/data/", - "uri_prefix_synonyms": [ - "http://bioregistry.io/pkdb:", - "http://identifiers.org/pkdb/", - "http://identifiers.org/pkdb:", - "http://pk-db.com/data/", - "https://bioregistry.io/pkdb:", - "https://identifiers.org/pkdb/", - "https://identifiers.org/pkdb:" - ] - }, - { - "prefix": "PLANA", - "uri_prefix": "http://purl.obolibrary.org/obo/PLANA_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PLANA:", - "http://bioregistry.io/plana:", - "http://www.ebi.ac.uk/ols/ontologies/plana/terms?iri=http://purl.obolibrary.org/obo/PLANA_", - "https://bioregistry.io/PLANA:", - "https://bioregistry.io/plana:", - "https://purl.obolibrary.org/obo/PLANA_", - "https://www.ebi.ac.uk/ols/ontologies/plana/terms?iri=http://purl.obolibrary.org/obo/PLANA_" + "https://bio2rdf.org/pirsf:", + "https://bioregistry.io/pirsf:", + "https://identifiers.org/pirsf/", + "https://identifiers.org/pirsf:", + "https://n2t.net/pirsf:", + "https://proteininformationresource.org/cgi-bin/ipcSF?id=" ] }, { - "prefix": "PLANP", - "uri_prefix": "http://purl.obolibrary.org/obo/PLANP_", + "pattern": "^PKDB[0-9]{5}$", + "prefix": "pkdb", + "uri_prefix": "https://pk-db.com/data/", "uri_prefix_synonyms": [ - "http://bioregistry.io/PLANP:", - "http://bioregistry.io/planp:", - "http://www.ebi.ac.uk/ols/ontologies/planp/terms?iri=http://purl.obolibrary.org/obo/PLANP_", - "https://bioregistry.io/PLANP:", - "https://bioregistry.io/planp:", - "https://purl.obolibrary.org/obo/PLANP_", - "https://www.ebi.ac.uk/ols/ontologies/planp/terms?iri=http://purl.obolibrary.org/obo/PLANP_" + "http://bioregistry.io/pkdb:", + "http://identifiers.org/pkdb/", + "http://identifiers.org/pkdb:", + "http://pk-db.com/data/", + "https://bioregistry.io/pkdb:", + "https://identifiers.org/pkdb/", + "https://identifiers.org/pkdb:" ] }, { + "pattern": "^[A-Z][a-z]{2}_([A-Za-z]{3}[0-9]{6})|([A-Za-z0-9\\._\\-#]*)$", "prefix": "planttfdb", "uri_prefix": "http://planttfdb.cbi.pku.edu.cn/tf.php?uid=", "uri_prefix_synonyms": [ @@ -17212,6 +19922,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "plasmodb", "prefix_synonyms": [ "ApiDB_PlasmoDB" @@ -17236,17 +19947,7 @@ ] }, { - "prefix": "PLO", - "uri_prefix": "http://purl.obolibrary.org/obo/PLO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PLO:", - "http://bioregistry.io/plo:", - "https://bioregistry.io/PLO:", - "https://bioregistry.io/plo:", - "https://purl.obolibrary.org/obo/PLO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "pmap.cutdb", "uri_prefix": "http://cutdb.burnham.org/relation/show/", "uri_prefix_synonyms": [ @@ -17266,6 +19967,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pmap.substratedb", "uri_prefix": "https://identifiers.org/pmap.substratedb:", "uri_prefix_synonyms": [ @@ -17281,6 +19983,7 @@ ] }, { + "pattern": "^PMC\\d+(\\.\\d+)?$", "prefix": "pmc", "prefix_synonyms": [ "PMC", @@ -17292,26 +19995,27 @@ "http://bioregistry.io/PMC:", "http://bioregistry.io/PMCID:", "http://bioregistry.io/pmc:", - "http://europepmc.org/articles/PMC", "http://identifiers.org/pmc/", "http://identifiers.org/pmc:", "http://n2t.net/pmc:", "http://www.ncbi.nlm.nih.gov/pmc/", "http://www.ncbi.nlm.nih.gov/pmc/articles/", + "http://www.ncbi.nlm.nih.gov/pmc/articles/PMC", "https://bio2rdf.org/pmc:", "https://bioregistry.io/PMC:", "https://bioregistry.io/PMCID:", "https://bioregistry.io/pmc:", "https://europepmc.org/articles/", - "https://europepmc.org/articles/PMC", "https://identifiers.org/pmc/", "https://identifiers.org/pmc:", "https://n2t.net/pmc:", "https://www.ncbi.nlm.nih.gov/pmc/", - "https://www.ncbi.nlm.nih.gov/pmc/articles/" + "https://www.ncbi.nlm.nih.gov/pmc/articles/", + "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC" ] }, { + "pattern": "^PM\\d{7}$", "prefix": "pmdb", "uri_prefix": "https://bioinformatics.cineca.it/PMDB/user//search.php?idsearch=", "uri_prefix_synonyms": [ @@ -17331,6 +20035,7 @@ ] }, { + "pattern": "^[a-z0-9]{32,32}$", "prefix": "pmr", "uri_prefix": "https://models.physiomeproject.org/exposure/", "uri_prefix_synonyms": [ @@ -17344,6 +20049,7 @@ ] }, { + "pattern": "^[a-zA-Z0-9_\\-]+(/.*?)?$", "prefix": "pmr.workspace", "uri_prefix": "https://models.physiomeproject.org/workspace/", "uri_prefix_synonyms": [ @@ -17357,35 +20063,7 @@ ] }, { - "prefix": "PO", - "uri_prefix": "http://purl.obolibrary.org/obo/PO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/po:", - "http://bioregistry.io/PO:", - "http://bioregistry.io/po:", - "http://identifiers.org/PO/", - "http://identifiers.org/PO:", - "http://identifiers.org/po/PO:", - "http://n2t.net/po:", - "http://purl.bioontology.org/ontology/PO/PO:", - "http://www.ebi.ac.uk/ols/ontologies/po/terms?iri=http://purl.obolibrary.org/obo/PO_", - "http://www.plantontology.org/amigo/go.cgi?view=details&query=PO:", - "http://www.plantontology.org/amigo/go.cgi?view=details&search_constraint=terms&depth=0&query=", - "https://bio2rdf.org/po:", - "https://bioregistry.io/PO:", - "https://bioregistry.io/po:", - "https://identifiers.org/PO/", - "https://identifiers.org/PO:", - "https://identifiers.org/po/PO:", - "https://n2t.net/po:", - "https://purl.bioontology.org/ontology/PO/PO:", - "https://purl.obolibrary.org/obo/PO_", - "https://www.ebi.ac.uk/ols/ontologies/po/terms?iri=http://purl.obolibrary.org/obo/PO_", - "https://www.plantontology.org/amigo/go.cgi?view=details&query=PO:", - "https://www.plantontology.org/amigo/go.cgi?view=details&search_constraint=terms&depth=0&query=" - ] - }, - { + "pattern": "^[A-Za-z_0-9]+$", "prefix": "pocketome", "uri_prefix": "https://identifiers.org/pocketome:", "uri_prefix_synonyms": [ @@ -17399,6 +20077,7 @@ ] }, { + "pattern": "^[A-Za-z-0-9]+$", "prefix": "polbase", "uri_prefix": "https://identifiers.org/polbase:", "uri_prefix_synonyms": [ @@ -17412,6 +20091,7 @@ ] }, { + "pattern": "^S\\w+(\\.)?\\w+(\\.)?$", "prefix": "pombase", "prefix_synonyms": [ "PomBase" @@ -17436,32 +20116,7 @@ ] }, { - "prefix": "PORO", - "uri_prefix": "http://purl.obolibrary.org/obo/PORO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PORO:", - "http://bioregistry.io/poro:", - "http://www.ebi.ac.uk/ols/ontologies/poro/terms?iri=http://purl.obolibrary.org/obo/PORO_", - "https://bioregistry.io/PORO:", - "https://bioregistry.io/poro:", - "https://purl.obolibrary.org/obo/PORO_", - "https://www.ebi.ac.uk/ols/ontologies/poro/terms?iri=http://purl.obolibrary.org/obo/PORO_" - ] - }, - { - "prefix": "PPO", - "uri_prefix": "http://purl.obolibrary.org/obo/PPO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PPO:", - "http://bioregistry.io/ppo:", - "http://www.ebi.ac.uk/ols/ontologies/ppo/terms?iri=http://purl.obolibrary.org/obo/PPO_", - "https://bioregistry.io/PPO:", - "https://bioregistry.io/ppo:", - "https://purl.obolibrary.org/obo/PPO_", - "https://www.ebi.ac.uk/ols/ontologies/ppo/terms?iri=http://purl.obolibrary.org/obo/PPO_" - ] - }, - { + "pattern": "^PPR\\d+$", "prefix": "ppr", "uri_prefix": "https://europepmc.org/article/ppr/", "uri_prefix_synonyms": [ @@ -17470,44 +20125,6 @@ "https://bioregistry.io/ppr:" ] }, - { - "prefix": "PR", - "prefix_synonyms": [ - "PRO" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/PR_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/pr:", - "http://bioregistry.io/PR:", - "http://bioregistry.io/PRO:", - "http://bioregistry.io/pr:", - "http://identifiers.org/PR/", - "http://identifiers.org/PR:", - "http://identifiers.org/pr/PR:", - "http://n2t.net/pr:", - "http://pir.georgetown.edu/cgi-bin/pro/entry_pro?id=", - "http://proconsortium.org/app/entry/", - "http://proconsortium.org/app/entry/PR:", - "http://proconsortium.org/app/entry/PR_", - "http://purl.obolibrary.org/obo/vo/ontorat/PR_", - "http://www.ebi.ac.uk/ols/ontologies/pr/terms?iri=http://purl.obolibrary.org/obo/PR_", - "https://bio2rdf.org/pr:", - "https://bioregistry.io/PR:", - "https://bioregistry.io/PRO:", - "https://bioregistry.io/pr:", - "https://identifiers.org/PR/", - "https://identifiers.org/PR:", - "https://identifiers.org/pr/PR:", - "https://n2t.net/pr:", - "https://pir.georgetown.edu/cgi-bin/pro/entry_pro?id=", - "https://proconsortium.org/app/entry/", - "https://proconsortium.org/app/entry/PR:", - "https://proconsortium.org/app/entry/PR_", - "https://purl.obolibrary.org/obo/PR_", - "https://purl.obolibrary.org/obo/vo/ontorat/PR_", - "https://www.ebi.ac.uk/ols/ontologies/pr/terms?iri=http://purl.obolibrary.org/obo/PR_" - ] - }, { "prefix": "prefixcommons", "uri_prefix": "https://bioregistry.io/metaregistry/prefixcommons/", @@ -17518,6 +20135,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "pride", "uri_prefix": "http://purl.obolibrary.org/obo/PRIDE_", "uri_prefix_synonyms": [ @@ -17541,6 +20159,7 @@ ] }, { + "pattern": "^P(X|R)D\\d{6}$", "prefix": "pride.project", "uri_prefix": "https://www.ebi.ac.uk/pride/archive/projects/", "uri_prefix_synonyms": [ @@ -17558,6 +20177,7 @@ ] }, { + "pattern": "^PR\\d{5}$", "prefix": "prints", "prefix_synonyms": [ "sprint" @@ -17571,19 +20191,20 @@ "http://identifiers.org/prints/", "http://identifiers.org/prints:", "http://n2t.net/prints:", - "http://umber.sbs.man.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?display_opts=Prints&category=None&queryform=false&prints_accn=", "http://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?display_opts=Prints&category=None&queryform=false®expr=off&prints_accn=", + "http://www.ebi.ac.uk/interpro/entry/prints/", "https://130.88.97.239/cgi-bin/dbbrowser/sprint/searchprintss.cgi?display_opts=Prints&category=None&queryform=false®expr=off&prints_accn=", "https://bio2rdf.org/sprint:", "https://bioregistry.io/prints:", "https://bioregistry.io/sprint:", "https://identifiers.org/prints/", "https://n2t.net/prints:", - "https://umber.sbs.man.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?display_opts=Prints&category=None&queryform=false&prints_accn=", - "https://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?display_opts=Prints&category=None&queryform=false®expr=off&prints_accn=" + "https://www.bioinf.manchester.ac.uk/cgi-bin/dbbrowser/sprint/searchprintss.cgi?display_opts=Prints&category=None&queryform=false®expr=off&prints_accn=", + "https://www.ebi.ac.uk/interpro/entry/prints/" ] }, { + "pattern": "^PD\\d{6}$", "prefix": "probesanddrugs", "uri_prefix": "https://www.probes-drugs.org/compound/", "uri_prefix_synonyms": [ @@ -17593,6 +20214,7 @@ ] }, { + "pattern": "^(c|k)\\d{7}$", "prefix": "probonto", "uri_prefix": "http://www.probonto.org/ontology#PROB_", "uri_prefix_synonyms": [ @@ -17612,19 +20234,7 @@ ] }, { - "prefix": "PROCO", - "uri_prefix": "http://purl.obolibrary.org/obo/PROCO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PROCO:", - "http://bioregistry.io/proco:", - "http://www.ebi.ac.uk/ols/ontologies/proco/terms?iri=http://purl.obolibrary.org/obo/PROCO_", - "https://bioregistry.io/PROCO:", - "https://bioregistry.io/proco:", - "https://purl.obolibrary.org/obo/PROCO_", - "https://www.ebi.ac.uk/ols/ontologies/proco/terms?iri=http://purl.obolibrary.org/obo/PROCO_" - ] - }, - { + "pattern": "^PD\\d+$", "prefix": "prodom", "uri_prefix": "http://prodom.prabi.fr/prodom/current/cgi-bin/request.pl?question=DBEN&query=", "uri_prefix_synonyms": [ @@ -17642,6 +20252,7 @@ ] }, { + "pattern": "^[A-Z]C\\d{1,3}$", "prefix": "proglyc", "uri_prefix": "http://www.proglycprot.org/detail.aspx?ProId=", "uri_prefix_synonyms": [ @@ -17657,19 +20268,7 @@ ] }, { - "prefix": "PROPREO", - "uri_prefix": "http://purl.obolibrary.org/obo/PROPREO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/propreo:", - "http://bioregistry.io/PROPREO:", - "http://bioregistry.io/propreo:", - "https://bio2rdf.org/propreo:", - "https://bioregistry.io/PROPREO:", - "https://bioregistry.io/propreo:", - "https://purl.obolibrary.org/obo/PROPREO_" - ] - }, - { + "pattern": "^PS\\d{5}$", "prefix": "prosite", "uri_prefix": "https://prosite.expasy.org/", "uri_prefix_synonyms": [ @@ -17691,6 +20290,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "protclustdb", "uri_prefix": "https://www.ncbi.nlm.nih.gov/sites/entrez?Db=proteinclusters&Cmd=DetailsSearch&Term=", "uri_prefix_synonyms": [ @@ -17721,6 +20321,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "proteomicsdb.peptide", "uri_prefix": "https://www.proteomicsdb.org/#human/proteinDetails/", "uri_prefix_synonyms": [ @@ -17736,6 +20337,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "proteomicsdb.protein", "uri_prefix": "https://identifiers.org/proteomicsdb.protein:", "uri_prefix_synonyms": [ @@ -17749,6 +20351,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "protonet.cluster", "uri_prefix": "http://www.protonet.cs.huji.ac.il/requested/cluster_card.php?cluster=", "uri_prefix_synonyms": [ @@ -17766,6 +20369,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "protonet.proteincard", "uri_prefix": "http://www.protonet.cs.huji.ac.il/requested/protein_card.php?protein_id=", "uri_prefix_synonyms": [ @@ -17792,6 +20396,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pscdb", "uri_prefix": "https://identifiers.org/pscdb:", "uri_prefix_synonyms": [ @@ -17804,19 +20409,6 @@ "https://n2t.net/pscdb:" ] }, - { - "prefix": "PSDO", - "uri_prefix": "http://purl.obolibrary.org/obo/PSDO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PSDO:", - "http://bioregistry.io/psdo:", - "http://www.ebi.ac.uk/ols/ontologies/psdo/terms?iri=http://purl.obolibrary.org/obo/PSDO_", - "https://bioregistry.io/PSDO:", - "https://bioregistry.io/psdo:", - "https://purl.obolibrary.org/obo/PSDO_", - "https://www.ebi.ac.uk/ols/ontologies/psdo/terms?iri=http://purl.obolibrary.org/obo/PSDO_" - ] - }, { "prefix": "pseudogene", "prefix_synonyms": [ @@ -17834,6 +20426,7 @@ ] }, { + "pattern": "^P\\w+$", "prefix": "pseudomonas", "uri_prefix": "http://www.pseudomonas.com/feature/show/?locus_tag=", "uri_prefix_synonyms": [ @@ -17849,6 +20442,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "psipar", "uri_prefix": "https://www.ebi.ac.uk/ontology-lookup/?termId=PAR:", "uri_prefix_synonyms": [ @@ -17866,19 +20460,7 @@ ] }, { - "prefix": "PSO", - "uri_prefix": "http://purl.obolibrary.org/obo/PSO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PSO:", - "http://bioregistry.io/pso:", - "http://www.ebi.ac.uk/ols/ontologies/pso/terms?iri=http://purl.obolibrary.org/obo/PSO_", - "https://bioregistry.io/PSO:", - "https://bioregistry.io/pso:", - "https://purl.obolibrary.org/obo/PSO_", - "https://www.ebi.ac.uk/ols/ontologies/pso/terms?iri=http://purl.obolibrary.org/obo/PSO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "pubchem.bioassay", "prefix_synonyms": [ "pubchem.aid", @@ -17906,6 +20488,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pubchem.cell", "uri_prefix": "https://pubchem.ncbi.nlm.nih.gov/cell/", "uri_prefix_synonyms": [ @@ -17915,6 +20498,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pubchem.classification", "uri_prefix": "https://pubchem.ncbi.nlm.nih.gov/classification/#hid=", "uri_prefix_synonyms": [ @@ -17924,6 +20508,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pubchem.compound", "prefix_synonyms": [ "CID", @@ -17969,6 +20554,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pubchem.element", "uri_prefix": "https://pubchem.ncbi.nlm.nih.gov/element/", "uri_prefix_synonyms": [ @@ -17978,6 +20564,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "pubchem.substance", "prefix_synonyms": [ "DSSTox_Generic_SID" @@ -17996,135 +20583,36 @@ "https://bio2rdf.org/pubchem.substance:", "https://bioregistry.io/DSSTox_Generic_SID:", "https://bioregistry.io/pubchem.substance:", - "https://identifiers.org/pubchem.substance/", - "https://identifiers.org/pubchem.substance:", - "https://n2t.net/pubchem.substance:", - "https://pubchem.ncbi.nlm.nih.gov/substance/", - "https://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=", - "https://rdf.ncbi.nlm.nih.gov/pubchem/substance/SID", - "https://www.ncbi.nlm.nih.gov/sites/entrez?cmd=search&db=pcsubstance&term=" - ] - }, - { - "prefix": "publons.publication", - "uri_prefix": "https://publons.com/publon/", - "uri_prefix_synonyms": [ - "http://bioregistry.io/publons.publication:", - "http://publons.com/publon/", - "https://bioregistry.io/publons.publication:" - ] - }, - { - "prefix": "publons.researcher", - "uri_prefix": "https://publons.com/researcher/", - "uri_prefix_synonyms": [ - "http://bioregistry.io/publons.researcher:", - "http://publons.com/researcher/", - "https://bioregistry.io/publons.researcher:" - ] - }, - { - "prefix": "PMID", - "prefix_synonyms": [ - "MEDLINE", - "PubMed", - "pmid" - ], - "uri_prefix": "http://rdf.ncbi.nlm.nih.gov/pubchem/reference/", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/pubmed:", - "http://bioregistry.io/MEDLINE:", - "http://bioregistry.io/PMID:", - "http://bioregistry.io/PubMed:", - "http://bioregistry.io/pmid:", - "http://bioregistry.io/pubmed:", - "http://europepmc.org/abstract/MED/", - "http://identifiers.org/pubmed/", - "http://identifiers.org/pubmed:", - "http://linkedlifedata.com/resource/pubmed/id/", - "http://n2t.net/pubmed:", - "http://pubmed.ncbi.nlm.nih.gov/", - "http://purl.uniprot.org/citations/", - "http://purl.uniprot.org/pubmed/", - "http://scholia.toolforge.org/pubmed/", - "http://www.hubmed.org/display.cgi?uids=", - "http://www.ncbi.nlm.nih.gov/pubmed/", - "https://bio2rdf.org/pubmed:", - "https://bioregistry.io/MEDLINE:", - "https://bioregistry.io/PMID:", - "https://bioregistry.io/PubMed:", - "https://bioregistry.io/pmid:", - "https://bioregistry.io/pubmed:", - "https://europepmc.org/abstract/MED/", - "https://identifiers.org/pubmed/", - "https://identifiers.org/pubmed:", - "https://linkedlifedata.com/resource/pubmed/id/", - "https://n2t.net/pubmed:", - "https://pubmed.ncbi.nlm.nih.gov/", - "https://purl.uniprot.org/citations/", - "https://purl.uniprot.org/pubmed/", - "https://rdf.ncbi.nlm.nih.gov/pubchem/reference/", - "https://scholia.toolforge.org/pubmed/", - "https://www.hubmed.org/display.cgi?uids=", - "https://www.ncbi.nlm.nih.gov/pubmed/" - ] - }, - { - "prefix": "PuRO", - "uri_prefix": "http://purl.org/spar/pro/", - "uri_prefix_synonyms": [ - "http://bioregistry.io/PuRO:", - "http://bioregistry.io/puro:", - "https://bioregistry.io/PuRO:", - "https://bioregistry.io/puro:", - "https://purl.org/spar/pro/" + "https://identifiers.org/pubchem.substance/", + "https://identifiers.org/pubchem.substance:", + "https://n2t.net/pubchem.substance:", + "https://pubchem.ncbi.nlm.nih.gov/substance/", + "https://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?sid=", + "https://rdf.ncbi.nlm.nih.gov/pubchem/substance/SID", + "https://www.ncbi.nlm.nih.gov/sites/entrez?cmd=search&db=pcsubstance&term=" ] }, { - "prefix": "PW", - "uri_prefix": "http://purl.obolibrary.org/obo/PW_", + "prefix": "publons.publication", + "uri_prefix": "https://publons.com/publon/", "uri_prefix_synonyms": [ - "http://bio2rdf.org/pw:", - "http://bioregistry.io/PW:", - "http://bioregistry.io/pw:", - "http://identifiers.org/PW/", - "http://identifiers.org/PW:", - "http://identifiers.org/obo.pw/PW:", - "http://identifiers.org/pw/PW:", - "http://n2t.net/pw:", - "http://purl.bioontology.org/ontology/PW/", - "http://purl.bioontology.org/ontology/PW/PW:", - "http://rgd.mcw.edu/rgdweb/ontology/annot.html?acc_id=", - "http://rgd.mcw.edu/rgdweb/ontology/annot.html?acc_id=PW:", - "http://www.ebi.ac.uk/ols/ontologies/pw/terms?iri=http://purl.obolibrary.org/obo/PW_", - "https://bio2rdf.org/pw:", - "https://bioregistry.io/PW:", - "https://bioregistry.io/pw:", - "https://identifiers.org/PW/", - "https://identifiers.org/PW:", - "https://identifiers.org/obo.pw/PW:", - "https://identifiers.org/pw/PW:", - "https://n2t.net/pw:", - "https://purl.bioontology.org/ontology/PW/", - "https://purl.bioontology.org/ontology/PW/PW:", - "https://purl.obolibrary.org/obo/PW_", - "https://rgd.mcw.edu/rgdweb/ontology/annot.html?acc_id=", - "https://rgd.mcw.edu/rgdweb/ontology/annot.html?acc_id=PW:", - "https://www.ebi.ac.uk/ols/ontologies/pw/terms?iri=http://purl.obolibrary.org/obo/PW_" + "http://bioregistry.io/publons.publication:", + "http://publons.com/publon/", + "https://bioregistry.io/publons.publication:" ] }, { - "prefix": "PWO", - "uri_prefix": "http://purl.org/spar/pwo/", + "pattern": "^\\d+$", + "prefix": "publons.researcher", + "uri_prefix": "https://publons.com/researcher/", "uri_prefix_synonyms": [ - "http://bioregistry.io/PWO:", - "http://bioregistry.io/pwo:", - "https://bioregistry.io/PWO:", - "https://bioregistry.io/pwo:", - "https://purl.org/spar/pwo/" + "http://bioregistry.io/publons.researcher:", + "http://publons.com/researcher/", + "https://bioregistry.io/publons.researcher:" ] }, { + "pattern": "^(R)?PXD\\d{6}$", "prefix": "px", "uri_prefix": "http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=", "uri_prefix_synonyms": [ @@ -18140,6 +20628,7 @@ ] }, { + "pattern": "^[a-zA-Z_][a-zA-Z0-9\\-_]+$", "prefix": "pypi", "uri_prefix": "https://pypi.org/project/", "uri_prefix_synonyms": [ @@ -18153,6 +20642,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "qb", "uri_prefix": "http://purl.org/linked-data/cube#", "uri_prefix_synonyms": [ @@ -18162,6 +20652,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "qtldb", "prefix_synonyms": [ "cattleqtldb", @@ -18249,6 +20740,7 @@ ] }, { + "pattern": "^RID\\d+$", "prefix": "radlex", "uri_prefix": "https://radlex.org/RID/", "uri_prefix_synonyms": [ @@ -18258,6 +20750,7 @@ ] }, { + "pattern": "^Os\\S+g\\d{7}$", "prefix": "rapdb.locus", "prefix_synonyms": [ "irgsp" @@ -18276,6 +20769,7 @@ ] }, { + "pattern": "^Os\\S+t\\d{7}-\\d{2}$", "prefix": "rapdb.transcript", "uri_prefix": "https://rapdb.dna.affrc.go.jp/viewer/gene_detail/irgsp1?name=", "uri_prefix_synonyms": [ @@ -18304,6 +20798,7 @@ ] }, { + "pattern": "^[-0-9a-zA-Z]+(@[-0-9a-zA-Z]+)?$", "prefix": "rbk", "uri_prefix": "https://www.rebuildingakidney.org/id/", "uri_prefix_synonyms": [ @@ -18319,25 +20814,15 @@ ] }, { - "prefix": "RBO", - "uri_prefix": "http://purl.obolibrary.org/obo/RBO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/RBO:", - "http://bioregistry.io/rbo:", - "http://www.ebi.ac.uk/ols/ontologies/rbo/terms?iri=http://purl.obolibrary.org/obo/RBO_", - "https://bioregistry.io/RBO:", - "https://bioregistry.io/rbo:", - "https://purl.obolibrary.org/obo/RBO_", - "https://www.ebi.ac.uk/ols/ontologies/rbo/terms?iri=http://purl.obolibrary.org/obo/RBO_" - ] - }, - { + "pattern": "^RCB\\d+$", "prefix": "rcb", "uri_prefix": "https://cellbank.brc.riken.jp/cell_bank/CellInfo/?cellNo=", "uri_prefix_synonyms": [ "http://bioregistry.io/rcb:", "http://cellbank.brc.riken.jp/cell_bank/CellInfo/?cellNo=", - "https://bioregistry.io/rcb:" + "http://scicrunch.org/resolver/RRID:IMSR_RBRC_", + "https://bioregistry.io/rcb:", + "https://scicrunch.org/resolver/RRID:IMSR_RBRC_" ] }, { @@ -18359,6 +20844,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "rdo", "uri_prefix": "http://www.semanticweb.org/mca/ontologies/2018/8/untitled-ontology-47#", "uri_prefix_synonyms": [ @@ -18368,6 +20854,7 @@ ] }, { + "pattern": "^r3d\\d{9,9}$", "prefix": "re3data", "uri_prefix": "https://www.re3data.org/repository/", "uri_prefix_synonyms": [ @@ -18381,6 +20868,7 @@ ] }, { + "pattern": "^R-[A-Z]{3}-\\d+(-\\d+)?(\\.\\d+)?$", "prefix": "reactome", "prefix_synonyms": [ "RE", @@ -18412,6 +20900,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "rebase", "uri_prefix": "https://identifiers.org/rebase:", "uri_prefix_synonyms": [ @@ -18429,6 +20918,7 @@ ] }, { + "pattern": "^RBR-\\w+$", "prefix": "rebec", "uri_prefix": "https://ensaiosclinicos.gov.br/rg/", "uri_prefix_synonyms": [ @@ -18462,6 +20952,7 @@ ] }, { + "pattern": "^[0-9][A-Za-z0-9]{3}[A-Za-z0-9][A-Za-z0-9]?[0-9]?[0-9]?$", "prefix": "repeatsdb.structure", "uri_prefix": "https://repeatsdb.org/structure/", "uri_prefix_synonyms": [ @@ -18475,6 +20966,7 @@ ] }, { + "pattern": "^\\d+-\\d+$", "prefix": "repec", "uri_prefix": "https://www.ins.gob.pe/ensayosclinicos/rpec/recuperarECPBNuevo.asp?val=&NroPag=1&flg=0&ver=EN&numEC=", "uri_prefix_synonyms": [ @@ -18493,44 +20985,7 @@ ] }, { - "prefix": "RESID", - "uri_prefix": "http://purl.obolibrary.org/obo/RESID_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/resid:", - "http://bioregistry.io/RESID:", - "http://bioregistry.io/resid:", - "http://identifiers.org/resid/", - "http://identifiers.org/resid:", - "http://n2t.net/resid:", - "http://pir0.georgetown.edu/cgi-bin/resid?id=", - "http://proteininformationresource.org/cgi-bin/resid?id=", - "https://bio2rdf.org/resid:", - "https://bioregistry.io/RESID:", - "https://bioregistry.io/resid:", - "https://identifiers.org/resid/", - "https://identifiers.org/resid:", - "https://n2t.net/resid:", - "https://pir0.georgetown.edu/cgi-bin/resid?id=", - "https://proteininformationresource.org/cgi-bin/resid?id=", - "https://purl.obolibrary.org/obo/RESID_" - ] - }, - { - "prefix": "REX", - "uri_prefix": "http://purl.obolibrary.org/obo/REX_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/rex:", - "http://bioregistry.io/REX:", - "http://bioregistry.io/rex:", - "http://www.ebi.ac.uk/ols/ontologies/rex/terms?iri=http://purl.obolibrary.org/obo/REX_", - "https://bio2rdf.org/rex:", - "https://bioregistry.io/REX:", - "https://bioregistry.io/rex:", - "https://purl.obolibrary.org/obo/REX_", - "https://www.ebi.ac.uk/ols/ontologies/rex/terms?iri=http://purl.obolibrary.org/obo/REX_" - ] - }, - { + "pattern": "^RF\\d{5}$", "prefix": "rfam", "uri_prefix": "https://rfam.xfam.org/family/", "uri_prefix_synonyms": [ @@ -18548,6 +21003,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "rfc", "uri_prefix": "https://tools.ietf.org/rfc/rfc", "uri_prefix_synonyms": [ @@ -18570,6 +21026,7 @@ ] }, { + "pattern": "^\\d{4,}$", "prefix": "rgd", "prefix_synonyms": [ "RGD" @@ -18584,6 +21041,7 @@ "http://n2t.net/rgd:", "http://rgd.mcw.edu/rgdweb/search/search.html?term=", "http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=", + "http://scicrunch.org/resolver/RRID:RGD_", "http://www.alliancegenome.org/gene/RGD:", "https://bio2rdf.org/rgd:", "https://bioregistry.io/RGD:", @@ -18594,10 +21052,12 @@ "https://rgd.mcw.edu/rgdweb/report/gene/main.html?id=", "https://rgd.mcw.edu/rgdweb/search/search.html?term=", "https://rgd.mcw.edu/tools/genes/genes_view.cgi?id=", + "https://scicrunch.org/resolver/RRID:RGD_", "https://www.alliancegenome.org/gene/RGD:" ] }, { + "pattern": "^\\d+$", "prefix": "rgd.qtl", "uri_prefix": "http://rgd.mcw.edu/rgdweb/report/qtl/main.html?id=", "uri_prefix_synonyms": [ @@ -18613,6 +21073,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "rgd.strain", "uri_prefix": "http://rgd.mcw.edu/rgdweb/report/strain/main.html?id=", "uri_prefix_synonyms": [ @@ -18628,6 +21089,7 @@ ] }, { + "pattern": "^\\d{5}$", "prefix": "rhea", "prefix_synonyms": [ "RHEA" @@ -18654,6 +21116,7 @@ ] }, { + "pattern": "^[a-zA-Z0-9-]+$", "prefix": "ribocentre", "prefix_synonyms": [ "ribocenter" @@ -18679,6 +21142,7 @@ ] }, { + "pattern": "^LOC\\_Os\\d{1,2}g\\d{5}$", "prefix": "ricegap", "uri_prefix": "http://rice.plantbiology.msu.edu/cgi-bin/ORF_infopage.cgi?&orf=", "uri_prefix_synonyms": [ @@ -18694,6 +21158,7 @@ ] }, { + "pattern": "^OSC\\d{4}$", "prefix": "ricenetdb.compound", "uri_prefix": "http://bis.zju.edu.cn/ricenetdb/compounddetails.php?ID=", "uri_prefix_synonyms": [ @@ -18709,6 +21174,7 @@ ] }, { + "pattern": "^LOC\\_Os\\d{1,2}g\\d{5}\\.\\d$", "prefix": "ricenetdb.gene", "uri_prefix": "http://bis.zju.edu.cn/ricenetdb/genedetails.php?ID=", "uri_prefix_synonyms": [ @@ -18724,6 +21190,7 @@ ] }, { + "pattern": "^osa-miR\\d{3,5}[a-z]{0,1}$", "prefix": "ricenetdb.mirna", "uri_prefix": "http://bis.zju.edu.cn/ricenetdb/miRNAdetails.php?ID=", "uri_prefix_synonyms": [ @@ -18739,6 +21206,7 @@ ] }, { + "pattern": "^LOC\\_Os\\d{1,2}g\\d{5}$", "prefix": "ricenetdb.protein", "uri_prefix": "http://bis.zju.edu.cn/ricenetdb/proteindetails.php?ID=", "uri_prefix_synonyms": [ @@ -18754,6 +21222,7 @@ ] }, { + "pattern": "^OSR\\d{4}$", "prefix": "ricenetdb.reaction", "uri_prefix": "http://bis.zju.edu.cn/ricenetdb/reactiondetails.php?ID=", "uri_prefix_synonyms": [ @@ -18769,6 +21238,7 @@ ] }, { + "pattern": "^[a-z]+/[0-9]+$", "prefix": "rism", "uri_prefix": "https://rism.online/", "uri_prefix_synonyms": [ @@ -18793,6 +21263,7 @@ ] }, { + "pattern": "^URS[0-9A-F]{10}(\\_\\d+)?$", "prefix": "rnacentral", "prefix_synonyms": [ "LNCRNADB" @@ -18826,6 +21297,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "rnaloops", "uri_prefix": "https://rnaloops.cs.put.poznan.pl/search/details/", "uri_prefix_synonyms": [ @@ -18835,6 +21307,7 @@ ] }, { + "pattern": "^\\d{3}$", "prefix": "rnamod", "uri_prefix": "http://rna.rega.kuleuven.be/cgi-bin/rnamods/rnashow.pl?", "uri_prefix_synonyms": [ @@ -18844,6 +21317,7 @@ ] }, { + "pattern": "^\\d{3}$", "prefix": "rnamods", "uri_prefix": "http://mods.rna.albany.edu/mods/modifications/view/", "uri_prefix_synonyms": [ @@ -18862,21 +21336,6 @@ "https://s59.cas.albany.edu/RNAmods/cgi-bin/rnashow.cgi?" ] }, - { - "prefix": "RNAO", - "uri_prefix": "http://purl.obolibrary.org/obo/RNAO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/rnao:", - "http://bioregistry.io/RNAO:", - "http://bioregistry.io/rnao:", - "http://www.ebi.ac.uk/ols/ontologies/rnao/terms?iri=http://purl.obolibrary.org/obo/RNAO_", - "https://bio2rdf.org/rnao:", - "https://bioregistry.io/RNAO:", - "https://bioregistry.io/rnao:", - "https://purl.obolibrary.org/obo/RNAO_", - "https://www.ebi.ac.uk/ols/ontologies/rnao/terms?iri=http://purl.obolibrary.org/obo/RNAO_" - ] - }, { "prefix": "rnavdb", "uri_prefix": "http://virus.zoo.ox.ac.uk/rnavirusdb/virus.php?id=", @@ -18889,53 +21348,7 @@ ] }, { - "prefix": "RO", - "prefix_synonyms": [ - "RO_proposed_relation", - "obo_rel", - "oborel" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/RO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/ro:", - "http://bioregistry.io/RO:", - "http://bioregistry.io/RO_proposed_relation:", - "http://bioregistry.io/obo_rel:", - "http://bioregistry.io/oborel:", - "http://bioregistry.io/ro:", - "http://identifiers.org/RO/", - "http://identifiers.org/RO:", - "http://identifiers.org/ro/RO_", - "http://n2t.net/ro:", - "http://www.ebi.ac.uk/ols/ontologies/ro/terms?iri=http://purl.obolibrary.org/obo/RO_", - "https://bio2rdf.org/ro:", - "https://bioregistry.io/RO:", - "https://bioregistry.io/RO_proposed_relation:", - "https://bioregistry.io/obo_rel:", - "https://bioregistry.io/oborel:", - "https://bioregistry.io/ro:", - "https://identifiers.org/RO/", - "https://identifiers.org/RO:", - "https://identifiers.org/ro/RO_", - "https://n2t.net/ro:", - "https://purl.obolibrary.org/obo/RO_", - "https://www.ebi.ac.uk/ols/ontologies/ro/terms?iri=http://purl.obolibrary.org/obo/RO_" - ] - }, - { - "prefix": "RoleO", - "uri_prefix": "http://purl.obolibrary.org/obo/RoleO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/roleo:", - "http://bioregistry.io/RoleO:", - "http://bioregistry.io/roleo:", - "https://bio2rdf.org/roleo:", - "https://bioregistry.io/RoleO:", - "https://bioregistry.io/roleo:", - "https://purl.obolibrary.org/obo/RoleO_" - ] - }, - { + "pattern": "^0[a-hj-km-np-tv-z|0-9]{6}[0-9]{2}$", "prefix": "ror", "uri_prefix": "https://ror.org/", "uri_prefix_synonyms": [ @@ -18951,6 +21364,7 @@ ] }, { + "pattern": "^m\\w+$", "prefix": "rouge", "uri_prefix": "https://www.kazusa.or.jp/rouge/gfpage/", "uri_prefix_synonyms": [ @@ -18968,6 +21382,7 @@ ] }, { + "pattern": "^RPCEC\\d+$", "prefix": "rpcec", "uri_prefix": "https://rpcec.sld.cu/en/trials/", "uri_prefix_synonyms": [ @@ -18977,6 +21392,7 @@ ] }, { + "pattern": "^[a-zA-Z]+.+$", "prefix": "rrid", "uri_prefix": "https://scicrunch.org/resolver/RRID:", "uri_prefix_synonyms": [ @@ -18994,21 +21410,19 @@ ] }, { - "prefix": "RS", - "uri_prefix": "http://purl.obolibrary.org/obo/RS_", + "pattern": "^\\d+$", + "prefix": "rrrc", + "uri_prefix": "https://www.rrrc.us/Strain/?x=", "uri_prefix_synonyms": [ - "http://bio2rdf.org/rs:", - "http://bioregistry.io/RS:", - "http://bioregistry.io/rs:", - "http://www.ebi.ac.uk/ols/ontologies/rs/terms?iri=http://purl.obolibrary.org/obo/RS_", - "https://bio2rdf.org/rs:", - "https://bioregistry.io/RS:", - "https://bioregistry.io/rs:", - "https://purl.obolibrary.org/obo/RS_", - "https://www.ebi.ac.uk/ols/ontologies/rs/terms?iri=http://purl.obolibrary.org/obo/RS_" + "http://bioregistry.io/rrrc:", + "http://scicrunch.org/resolver/RRID:RRRC_", + "http://www.rrrc.us/Strain/?x=", + "https://bioregistry.io/rrrc:", + "https://scicrunch.org/resolver/RRID:RRRC_" ] }, { + "pattern": "^[0-9a-z]{24,24}$", "prefix": "runbiosimulations", "uri_prefix": "https://run.biosimulations.org/simulations/", "uri_prefix_synonyms": [ @@ -19022,21 +21436,7 @@ ] }, { - "prefix": "RXNO", - "uri_prefix": "http://purl.obolibrary.org/obo/RXNO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/RXNO:", - "http://bioregistry.io/rxno:", - "http://www.ebi.ac.uk/ols/ontologies/rxno/terms?iri=http://purl.obolibrary.org/obo/RXNO_", - "http://www.rsc.org/publishing/journals/prospect/ontology.asp?id=", - "https://bioregistry.io/RXNO:", - "https://bioregistry.io/rxno:", - "https://purl.obolibrary.org/obo/RXNO_", - "https://www.ebi.ac.uk/ols/ontologies/rxno/terms?iri=http://purl.obolibrary.org/obo/RXNO_", - "https://www.rsc.org/publishing/journals/prospect/ontology.asp?id=" - ] - }, - { + "pattern": "^[0-9]{1,7}$", "prefix": "rxnorm", "prefix_synonyms": [ "RXCUI" @@ -19064,6 +21464,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sabiork.compound", "uri_prefix": "http://sabiork.h-its.org/newSearch?q=", "uri_prefix_synonyms": [ @@ -19079,6 +21480,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sabiork.kineticrecord", "uri_prefix": "http://sabiork.h-its.org/kineticLawEntry.jsp?viewData=true&kinlawid=", "uri_prefix_synonyms": [ @@ -19100,6 +21502,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sabiork.reaction", "prefix_synonyms": [ "SABIO-RK" @@ -19128,6 +21531,7 @@ ] }, { + "pattern": "^\\d{6}$", "prefix": "salk", "uri_prefix": "https://abrc.osu.edu/stocks/number/SALK_", "uri_prefix_synonyms": [ @@ -19137,6 +21541,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "salmon", "uri_prefix": "https://purl.dataone.org/odo/SALMON_", "uri_prefix_synonyms": [ @@ -19146,21 +21551,7 @@ ] }, { - "prefix": "SAO", - "uri_prefix": "http://purl.obolibrary.org/obo/SAO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/sao:", - "http://bioregistry.io/SAO:", - "http://bioregistry.io/sao:", - "http://uri.neuinfo.org/nif/nifstd/sao", - "https://bio2rdf.org/sao:", - "https://bioregistry.io/SAO:", - "https://bioregistry.io/sao:", - "https://purl.obolibrary.org/obo/SAO_", - "https://uri.neuinfo.org/nif/nifstd/sao" - ] - }, - { + "pattern": "^\\d+$", "prefix": "sasap", "uri_prefix": "https://purl.dataone.org/odo/SASAP_", "uri_prefix_synonyms": [ @@ -19169,66 +21560,24 @@ "https://bioregistry.io/sasap:" ] }, - { - "prefix": "sasbdb", - "uri_prefix": "http://www.sasbdb.org/data/", - "uri_prefix_synonyms": [ - "http://bioregistry.io/sasbdb:", - "http://identifiers.org/sasbdb/", - "http://identifiers.org/sasbdb:", - "http://n2t.net/sasbdb:", - "https://bioregistry.io/sasbdb:", - 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"https://purl.obolibrary.org/obo/SBO_", - "https://www.ebi.ac.uk/ols/ontologies/sbo/terms?iri=http://purl.obolibrary.org/obo/SBO_", - "https://www.ebi.ac.uk/ols4/ontologies/sbo/terms?obo_id=SBO:", - "https://www.ebi.ac.uk/sbo/main/", - "https://www.ebi.ac.uk/sbo/main/SBO:" - ] - }, - { - "prefix": "SCDO", - "uri_prefix": "http://purl.obolibrary.org/obo/SCDO_", + { + "pattern": "^[Ss][Aa][Ss][A-Za-z0-9]{3}[0-9]$", + "prefix": "sasbdb", + "uri_prefix": "http://www.sasbdb.org/data/", "uri_prefix_synonyms": [ - "http://bioregistry.io/SCDO:", - "http://bioregistry.io/scdo:", - "http://www.ebi.ac.uk/ols/ontologies/scdo/terms?iri=http://purl.obolibrary.org/obo/SCDO_", - "https://bioregistry.io/SCDO:", - "https://bioregistry.io/scdo:", - "https://purl.obolibrary.org/obo/SCDO_", - "https://www.ebi.ac.uk/ols/ontologies/scdo/terms?iri=http://purl.obolibrary.org/obo/SCDO_" + "http://bioregistry.io/sasbdb:", + "http://identifiers.org/sasbdb/", + "http://identifiers.org/sasbdb:", + "http://n2t.net/sasbdb:", + "https://bioregistry.io/sasbdb:", + "https://identifiers.org/sasbdb/", + "https://identifiers.org/sasbdb:", + "https://n2t.net/sasbdb:", + "https://www.sasbdb.org/data/" ] }, { + "pattern": "^A\\d{4}$", "prefix": "schem", "uri_prefix": "https://biopragmatics.github.io/providers/schem/", "uri_prefix_synonyms": [ @@ -19261,6 +21610,7 @@ ] }, { + "pattern": "^[0-9a-f]{8}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{12}$", "prefix": "sciflection", "uri_prefix": "https://sciflection.com/", "uri_prefix_synonyms": [ @@ -19274,6 +21624,7 @@ ] }, { + "pattern": "^C\\d{4}$", "prefix": "scomp", "uri_prefix": "https://biopragmatics.github.io/providers/scomp/", "uri_prefix_synonyms": [ @@ -19283,6 +21634,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "scop", "prefix_synonyms": [ "scop.sun", @@ -19330,6 +21682,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "scopus", "prefix_synonyms": [ "scopus.author" @@ -19353,6 +21706,7 @@ ] }, { + "pattern": "^[1-9]\\d{0,11}$", "prefix": "scopus.publication", "uri_prefix": "https://www.scopus.com/sourceid/", "uri_prefix_synonyms": [ @@ -19362,6 +21716,7 @@ ] }, { + "pattern": "^2-s2\\.0-\\d+$", "prefix": "scopus.work", "prefix_synonyms": [ "scopus.eid" @@ -19375,17 +21730,6 @@ "https://www.scopus.com/record/display.url?origin=inward&eid=" ] }, - { - "prefix": "SCoRO", - "uri_prefix": "http://purl.org/spar/scoro/", - "uri_prefix_synonyms": [ - "http://bioregistry.io/SCoRO:", - "http://bioregistry.io/scoro:", - "https://bioregistry.io/SCoRO:", - "https://bioregistry.io/scoro:", - "https://purl.org/spar/scoro/" - ] - }, { "prefix": "scpd", "uri_prefix": "http://rulai.cshl.edu/cgi-bin/SCPD/getgene2?", @@ -19398,6 +21742,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "scr", "prefix_synonyms": [ "scicrunch" @@ -19406,12 +21751,15 @@ "uri_prefix_synonyms": [ "http://bioregistry.io/scicrunch:", "http://bioregistry.io/scr:", + "http://scicrunch.org/resolver/RRID:SCR_", "https://bioregistry.io/scicrunch:", "https://bioregistry.io/scr:", + "https://scicrunch.org/resolver/RRID:SCR_", "https://scicrunch.org/resolver/SCR_" ] }, { + "pattern": "^\\w+$", "prefix": "scretf", "uri_prefix": "http://stormo.wustl.edu/ScerTF/details/", "uri_prefix_synonyms": [ @@ -19438,6 +21786,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sdbs", "uri_prefix": "http://riodb01.ibase.aist.go.jp/sdbs/cgi-bin/cre_frame_disp.cgi?sdbsno=", "uri_prefix_synonyms": [ @@ -19453,6 +21802,7 @@ ] }, { + "pattern": "^\\d{8}$", "prefix": "sdgio", "uri_prefix": "http://purl.unep.org/sdg/SDGIO_", "uri_prefix_synonyms": [ @@ -19462,6 +21812,7 @@ ] }, { + "pattern": "^D\\d{4}$", "prefix": "sdis", "uri_prefix": "https://biopragmatics.github.io/providers/sdis/", "uri_prefix_synonyms": [ @@ -19471,6 +21822,7 @@ ] }, { + "pattern": "^[a-z]+(\\..*?)?$", "prefix": "sedml.format", "uri_prefix": "https://sed-ml.org/urns.html#format:", "uri_prefix_synonyms": [ @@ -19484,6 +21836,7 @@ ] }, { + "pattern": "^[a-z]+(\\..*?)?$", "prefix": "sedml.language", "uri_prefix": "https://sed-ml.org/urns.html#language:", "uri_prefix_synonyms": [ @@ -19497,6 +21850,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "seed", "uri_prefix": "http://seed-viewer.theseed.org/seedviewer.cgi?page=Subsystems&subsystem=", "uri_prefix_synonyms": [ @@ -19514,6 +21868,7 @@ ] }, { + "pattern": "^cpd\\d+$", "prefix": "seed.compound", "uri_prefix": "http://modelseed.org/biochem/compounds/", "uri_prefix_synonyms": [ @@ -19529,6 +21884,7 @@ ] }, { + "pattern": "^rxn\\d+$", "prefix": "seed.reaction", "uri_prefix": "http://modelseed.org/biochem/reactions/", "uri_prefix_synonyms": [ @@ -19544,6 +21900,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "seinet", "uri_prefix": "https://swbiodiversity.org/seinet/taxa/index.php?taxon=", "uri_prefix_synonyms": [ @@ -19562,6 +21919,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "senso", "uri_prefix": "http://purl.dataone.org/odo/SENSO_", "uri_prefix_synonyms": [ @@ -19580,32 +21938,7 @@ ] }, { - "prefix": "SEP", - "uri_prefix": "http://purl.obolibrary.org/obo/SEP_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/sep:", - "http://bioregistry.io/SEP:", - "http://bioregistry.io/sep:", - "https://bio2rdf.org/sep:", - "https://bioregistry.io/SEP:", - "https://bioregistry.io/sep:", - "https://purl.obolibrary.org/obo/SEP_" - ] - }, - { - "prefix": "SEPIO", - "uri_prefix": "http://purl.obolibrary.org/obo/SEPIO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/SEPIO:", - "http://bioregistry.io/sepio:", - "http://www.ebi.ac.uk/ols/ontologies/sepio/terms?iri=http://purl.obolibrary.org/obo/SEPIO_", - "https://bioregistry.io/SEPIO:", - "https://bioregistry.io/sepio:", - "https://purl.obolibrary.org/obo/SEPIO_", - "https://www.ebi.ac.uk/ols/ontologies/sepio/terms?iri=http://purl.obolibrary.org/obo/SEPIO_" - ] - }, - { + "pattern": "^F\\d{4}$", "prefix": "sfam", "uri_prefix": "https://biopragmatics.github.io/providers/sfam/", "uri_prefix_synonyms": [ @@ -19615,6 +21948,7 @@ ] }, { + "pattern": "^((S\\d+$)|(Y[A-Z]{2}\\d{3}[a-zA-Z](\\-[A-Z])?))$", "prefix": "sgd", "uri_prefix": "https://www.yeastgenome.org/locus/", "uri_prefix_synonyms": [ @@ -19638,6 +21972,7 @@ ] }, { + "pattern": "^PWY\\w{2}\\-\\d{3}$", "prefix": "sgd.pathways", "uri_prefix": "http://pathway.yeastgenome.org/YEAST/new-image?type=PATHWAY&object=", "uri_prefix_synonyms": [ @@ -19655,6 +21990,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sgn", "uri_prefix": "http://solgenomics.net/phenome/locus_display.pl?locus_id=", "uri_prefix_synonyms": [ @@ -19686,6 +22022,7 @@ ] }, { + "pattern": "^\\d{6}$", "prefix": "shareloc", "uri_prefix": "https://shareloc.xyz/#/ontology/vocabulary/SHARELOC_", "uri_prefix_synonyms": [ @@ -19695,6 +22032,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sharkipedia.species", "uri_prefix": "https://www.sharkipedia.org/species/", "uri_prefix_synonyms": [ @@ -19704,6 +22042,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sharkipedia.trait", "uri_prefix": "https://www.sharkipedia.org/traits/", "uri_prefix_synonyms": [ @@ -19713,6 +22052,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sharkipedia.trend", "uri_prefix": "https://www.sharkipedia.org/trends/", "uri_prefix_synonyms": [ @@ -19742,19 +22082,7 @@ ] }, { - "prefix": "SIBO", - "uri_prefix": "http://purl.obolibrary.org/obo/SIBO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/SIBO:", - "http://bioregistry.io/sibo:", - "http://www.ebi.ac.uk/ols/ontologies/sibo/terms?iri=http://purl.obolibrary.org/obo/SIBO_", - "https://bioregistry.io/SIBO:", - "https://bioregistry.io/sibo:", - "https://purl.obolibrary.org/obo/SIBO_", - "https://www.ebi.ac.uk/ols/ontologies/sibo/terms?iri=http://purl.obolibrary.org/obo/SIBO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "sider.drug", "uri_prefix": "http://sideeffects.embl.de/drugs/", "uri_prefix_synonyms": [ @@ -19779,6 +22107,7 @@ ] }, { + "pattern": "^A\\d{6}$", "prefix": "signaling-gateway", "uri_prefix": "http://www.signaling-gateway.org/molecule/query?afcsid=", "uri_prefix_synonyms": [ @@ -19796,6 +22125,7 @@ ] }, { + "pattern": "^SIGNOR\\-[A-Z]+\\d+$", "prefix": "signor", "prefix_synonyms": [ "SIGNOR" @@ -19814,6 +22144,7 @@ ] }, { + "pattern": "^\\d{6}$", "prefix": "sio", "uri_prefix": "https://www.ebi.ac.uk/ols4/ontologies/sio/terms?short_form=", "uri_prefix_synonyms": [ @@ -19831,6 +22162,7 @@ ] }, { + "pattern": "^[0-9]+:[0-9]+$", "prefix": "sisu", "uri_prefix": "http://search.sisuproject.fi/#/variant/", "uri_prefix_synonyms": [ @@ -19846,6 +22178,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "sitex", "uri_prefix": "http://www-bionet.sscc.ru/sitex/index.php?siteid=", "uri_prefix_synonyms": [ @@ -19863,6 +22196,7 @@ ] }, { + "pattern": "^SKIP\\d+$", "prefix": "skip", "uri_prefix": "https://skip.stemcellinformatics.org/SKIPSearch/cell_line_detail?accession=", "uri_prefix_synonyms": [ @@ -19872,6 +22206,7 @@ ] }, { + "pattern": "^rx[0-9]{5}$", "prefix": "skm", "uri_prefix": "https://identifiers.org/skm:", "uri_prefix_synonyms": [ @@ -19901,6 +22236,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "slkbase", "uri_prefix": "https://sumlineknowledgebase.com/?page_id=", "uri_prefix_synonyms": [ @@ -19910,33 +22246,7 @@ ] }, { - "prefix": "SLM", - "prefix_synonyms": [ - "swisslipid", - "swisslipids" - ], - "uri_prefix": "https://www.swisslipids.org/#/entity/SLM:", - "uri_prefix_synonyms": [ - "http://bioregistry.io/SLM:", - "http://bioregistry.io/slm:", - "http://bioregistry.io/swisslipid:", - "http://bioregistry.io/swisslipids:", - "http://identifiers.org/SLM/", - "http://identifiers.org/SLM:", - "http://identifiers.org/slm/SLM:", - "http://n2t.net/swisslipid:", - "http://www.swisslipids.org/#/entity/SLM:", - "https://bioregistry.io/SLM:", - "https://bioregistry.io/slm:", - "https://bioregistry.io/swisslipid:", - "https://bioregistry.io/swisslipids:", - "https://identifiers.org/SLM/", - "https://identifiers.org/SLM:", - "https://identifiers.org/slm/SLM:", - "https://n2t.net/swisslipid:" - ] - }, - { + "pattern": "^SM\\d{5}$", "prefix": "smart", "uri_prefix": "http://smart.embl-heidelberg.de/smart/do_annotation.pl?DOMAIN=", "uri_prefix_synonyms": [ @@ -19958,6 +22268,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "smid", "prefix_synonyms": [ "SMID-DB" @@ -19972,15 +22283,7 @@ ] }, { - "prefix": "smiles", - "uri_prefix": "https://chemapps.stolaf.edu/jmol/jmol.php?model=", - "uri_prefix_synonyms": [ - "http://bioregistry.io/smiles:", - "http://chemapps.stolaf.edu/jmol/jmol.php?model=", - "https://bioregistry.io/smiles:" - ] - }, - { + "pattern": "^SMP\\d+$", "prefix": "smpdb", "prefix_synonyms": [ "SMP" @@ -20015,122 +22318,6 @@ "https://www.ifomis.org/bfo/1.1/snap#" ] }, - { - "prefix": "SCTID", - "prefix_synonyms": [ - "SCTID_2010_1_31", - "SNOMECT", - "SNOMED", - "SNOMEDCT", - "SNOMEDCTCT", - "SNOMEDCTCT_2018_03_01", - "SNOMEDCTCT_2019_03_01", - "SNOMEDCT_2005_07_31", - "SNOMEDCT_2010_1_31", - "SNOMEDCT_2020_03_01", - "SNOMEDCT_US", - "SNOMEDCT_US_2015_03_01", - "SNOMEDCT_US_2016_03_01", - 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"https://snomed.info/id/", - "https://www.snomedbrowser.com/Codes/Details/" - ] - }, { "prefix": "snornabase", "uri_prefix": "http://www-snorna.biotoul.fr/plus.php?id=", @@ -20139,61 +22326,22 @@ "http://bioregistry.io/snornabase:", "https://bio2rdf.org/snornalbmedb:", "https://bioregistry.io/snornabase:", - "https://www-snorna.biotoul.fr/plus.php?id=" - ] - }, - { - "prefix": "snp500cancer", - "uri_prefix": "http://snp500cancer.nci.nih.gov/snp.cfm?both_snp_id=", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/snp500cancer:", - "http://bioregistry.io/snp500cancer:", - "https://bio2rdf.org/snp500cancer:", - "https://bioregistry.io/snp500cancer:", - "https://snp500cancer.nci.nih.gov/snp.cfm?both_snp_id=" - ] - }, - { - "prefix": "SO", - "uri_prefix": "http://purl.obolibrary.org/obo/SO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/so:", - "http://bioregistry.io/SO:", - "http://bioregistry.io/so:", - "http://identifiers.org/SO/", - "http://identifiers.org/SO:", - 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"prefix": "snp500cancer", + "uri_prefix": "http://snp500cancer.nci.nih.gov/snp.cfm?both_snp_id=", "uri_prefix_synonyms": [ - "http://bioregistry.io/SOPHARM:", - "http://bioregistry.io/sopharm:", - "https://bioregistry.io/SOPHARM:", - "https://bioregistry.io/sopharm:", - "https://purl.obolibrary.org/obo/SOPHARM_" + "http://bio2rdf.org/snp500cancer:", + "http://bioregistry.io/snp500cancer:", + "https://bio2rdf.org/snp500cancer:", + "https://bioregistry.io/snp500cancer:", + "https://snp500cancer.nci.nih.gov/snp.cfm?both_snp_id=" ] }, { + "pattern": "^\\w+(\\-)?\\w+(\\-)?\\w+$", "prefix": "soybase", "uri_prefix": "http://www.soybase.org/sbt/search/search_results.php?category=SNP&search_term=", "uri_prefix_synonyms": [ @@ -20222,21 +22370,7 @@ ] }, { - "prefix": "SPD", - "uri_prefix": "http://purl.obolibrary.org/obo/SPD_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/spdo:", - "http://bioregistry.io/SPD:", - "http://bioregistry.io/spd:", - 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+22439,7 @@ ] }, { + "pattern": "^10.\\w{4}/\\w{10}$", "prefix": "spp", "uri_prefix": "https://www.signalingpathways.org/datasets/dataset.jsf?doi=", "uri_prefix_synonyms": [ @@ -20315,6 +22453,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "srao", "uri_prefix": "http://www.fairsharing.org/ontology/subject/SRAO_", "uri_prefix_synonyms": [ @@ -20324,6 +22463,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ssbd.dataset", "uri_prefix": "https://ssbd.riken.jp/database/dataset/", "uri_prefix_synonyms": [ @@ -20333,6 +22473,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ssbd.project", "uri_prefix": "https://ssbd.riken.jp/database/project/", "uri_prefix_synonyms": [ @@ -20342,6 +22483,7 @@ ] }, { + "pattern": "^[A-Za-z_]+$", "prefix": "sssom", "uri_prefix": "https://w3id.org/sssom/", "uri_prefix_synonyms": [ @@ -20362,6 +22504,7 @@ ] }, { + "pattern": "^[0-9][A-Za-z0-9]{3}$", "prefix": "stap", "uri_prefix": "http://psb.kobic.re.kr/STAP/refinement1/result.php?search=", "uri_prefix_synonyms": [ @@ -20377,19 +22520,7 @@ ] }, { - "prefix": "STATO", - "uri_prefix": "http://purl.obolibrary.org/obo/STATO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/STATO:", - "http://bioregistry.io/stato:", - "http://www.ebi.ac.uk/ols/ontologies/stato/terms?iri=http://purl.obolibrary.org/obo/STATO_", - "https://bioregistry.io/STATO:", - "https://bioregistry.io/stato:", - "https://purl.obolibrary.org/obo/STATO_", - "https://www.ebi.ac.uk/ols/ontologies/stato/terms?iri=http://purl.obolibrary.org/obo/STATO_" - ] - }, - { + "pattern": "^\\w{14}$", "prefix": "stitch", "uri_prefix": "http://stitch.embl.de/interactions/", "uri_prefix_synonyms": [ @@ -20407,6 +22538,7 @@ ] }, { + "pattern": "^(STUDY|FILE|DATASET)\\d+$", "prefix": "storedb", "uri_prefix": "https://www.storedb.org/?", "uri_prefix_synonyms": [ @@ -20424,6 +22556,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "storedb.dataset", "uri_prefix": "https://www.storedb.org/?STOREDB:DATASET", "uri_prefix_synonyms": [ @@ -20433,6 +22566,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "storedb.file", "uri_prefix": "https://www.storedb.org/store_v3/download.jsp?fileId=", "uri_prefix_synonyms": [ @@ -20442,6 +22576,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "storedb.study", "uri_prefix": "https://www.storedb.org/store_v3/study.jsp?studyId=", "uri_prefix_synonyms": [ @@ -20453,6 +22588,7 @@ ] }, { + "pattern": "^T\\d{3}$", "prefix": "sty", "prefix_synonyms": [ "UMLSSG", @@ -20475,6 +22611,7 @@ ] }, { + "pattern": "^BG\\d+$", "prefix": "subtilist", "uri_prefix": "http://genolist.pasteur.fr/SubtiList/genome.cgi?external_query+", "uri_prefix_synonyms": [ @@ -20492,6 +22629,7 @@ ] }, { + "pattern": "^BSU\\d{5}$", "prefix": "subtiwiki", "uri_prefix": "http://www.subtiwiki.uni-goettingen.de/wiki/index.php/", "uri_prefix_synonyms": [ @@ -20509,6 +22647,7 @@ ] }, { + "pattern": "^[A-Za-z]+\\/[0-9]+$", "prefix": "sugarbind", "uri_prefix": "http://sugarbind.expasy.org/", "uri_prefix_synonyms": [ @@ -20524,6 +22663,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "supfam", "uri_prefix": "http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=", "uri_prefix_synonyms": [ @@ -20552,6 +22692,7 @@ ] }, { + "pattern": "^[1-9]:(cnt|dir|rel|rev|snp):[0-9a-f]+(;(origin|visit|anchor|path|lines)=\\S+)*$", "prefix": "swh", "uri_prefix": "https://archive.softwareheritage.org/browse/swh:", "uri_prefix_synonyms": [ @@ -20569,6 +22710,7 @@ ] }, { + "pattern": "^[A-Za-z0-9]+$", "prefix": "swissregulon", "uri_prefix": "http://swissregulon.unibas.ch/query/", "uri_prefix_synonyms": [ @@ -20583,31 +22725,6 @@ "https://swissregulon.unibas.ch/query/" ] }, - { - "prefix": "SWO", - "uri_prefix": "http://purl.obolibrary.org/obo/SWO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/swo:", - "http://bioregistry.io/SWO:", - "http://bioregistry.io/swo:", - "http://www.ebi.ac.uk/efo/swo/SWO_", - "http://www.ebi.ac.uk/ols/ontologies/swo/terms?iri=http://purl.obolibrary.org/obo/SWO_", - "http://www.ebi.ac.uk/swo/SWO_", - "http://www.ebi.ac.uk/swo/data/SWO_", - "http://www.ebi.ac.uk/swo/license/SWO_", - "http://www.ebi.ac.uk/swo/maturity/SWO_", - "https://bio2rdf.org/swo:", - "https://bioregistry.io/SWO:", - "https://bioregistry.io/swo:", - "https://purl.obolibrary.org/obo/SWO_", - "https://www.ebi.ac.uk/efo/swo/SWO_", - "https://www.ebi.ac.uk/ols/ontologies/swo/terms?iri=http://purl.obolibrary.org/obo/SWO_", - "https://www.ebi.ac.uk/swo/SWO_", - "https://www.ebi.ac.uk/swo/data/SWO_", - "https://www.ebi.ac.uk/swo/license/SWO_", - "https://www.ebi.ac.uk/swo/maturity/SWO_" - ] - }, { "prefix": "swrl", "uri_prefix": "http://www.w3.org/2003/11/swrl#", @@ -20618,21 +22735,7 @@ ] }, { - "prefix": "SYMP", - "uri_prefix": "http://purl.obolibrary.org/obo/SYMP_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/symptom:", - "http://bioregistry.io/SYMP:", - "http://bioregistry.io/symp:", - "http://www.ebi.ac.uk/ols/ontologies/symp/terms?iri=http://purl.obolibrary.org/obo/SYMP_", - "https://bio2rdf.org/symptom:", - "https://bioregistry.io/SYMP:", - "https://bioregistry.io/symp:", - "https://purl.obolibrary.org/obo/SYMP_", - "https://www.ebi.ac.uk/ols/ontologies/symp/terms?iri=http://purl.obolibrary.org/obo/SYMP_" - ] - }, - { + "pattern": "^T3D\\d+$", "prefix": "t3db", "uri_prefix": "http://www.t3db.org/toxins/", "uri_prefix_synonyms": [ @@ -20650,54 +22753,7 @@ ] }, { - "prefix": "T4FS", - "uri_prefix": "http://purl.obolibrary.org/obo/T4FS_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/T4FS:", - "http://bioregistry.io/t4fs:", - "http://www.ebi.ac.uk/ols/ontologies/t4fs/terms?iri=http://purl.obolibrary.org/obo/T4FS_", - "https://bioregistry.io/T4FS:", - "https://bioregistry.io/t4fs:", - "https://purl.obolibrary.org/obo/T4FS_", - "https://www.ebi.ac.uk/ols/ontologies/t4fs/terms?iri=http://purl.obolibrary.org/obo/T4FS_" - ] - }, - { - "prefix": "TADS", - "uri_prefix": "http://purl.obolibrary.org/obo/TADS_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/TADS:", - "http://bioregistry.io/tads:", - "http://www.ebi.ac.uk/ols/ontologies/tads/terms?iri=http://purl.obolibrary.org/obo/TADS_", - "https://bioregistry.io/TADS:", - "https://bioregistry.io/tads:", - "https://purl.obolibrary.org/obo/TADS_", - "https://www.ebi.ac.uk/ols/ontologies/tads/terms?iri=http://purl.obolibrary.org/obo/TADS_" - ] - }, - { - "prefix": "TAHE", - "uri_prefix": "http://purl.obolibrary.org/obo/TAHE_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/TAHE:", - "http://bioregistry.io/tahe:", - "https://bioregistry.io/TAHE:", - "https://bioregistry.io/tahe:", - "https://purl.obolibrary.org/obo/TAHE_" - ] - }, - { - "prefix": "TAHH", - "uri_prefix": "http://purl.obolibrary.org/obo/TAHH_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/TAHH:", - "http://bioregistry.io/tahh:", - "https://bioregistry.io/TAHH:", - "https://bioregistry.io/tahh:", - "https://purl.obolibrary.org/obo/TAHH_" - ] - }, - { + "pattern": "^\\d{7}$", "prefix": "tair.gene", "uri_prefix": "http://arabidopsis.org/servlets/TairObject?accession=Gene:", "uri_prefix_synonyms": [ @@ -20717,6 +22773,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "tair.locus", "uri_prefix": "http://www.arabidopsis.org/servlets/TairObject?accession=Locus:", "uri_prefix_synonyms": [ @@ -20736,17 +22793,16 @@ ] }, { + "pattern": "^\\d{10}$", "prefix": "tair.protein", "uri_prefix": "http://arabidopsis.org/servlets/TairObject?accession=AASequence:", "uri_prefix_synonyms": [ - "http://arabidopsis.org/servlets/TairObject?accession=", "http://bio2rdf.org/tair.protein:", "http://bioregistry.io/tair.protein:", "http://identifiers.org/tair.protein/", "http://identifiers.org/tair.protein/AASequence:", "http://identifiers.org/tair.protein:", "http://n2t.net/tair.protein:", - "https://arabidopsis.org/servlets/TairObject?accession=", "https://arabidopsis.org/servlets/TairObject?accession=AASequence:", "https://bio2rdf.org/tair.protein:", "https://bioregistry.io/tair.protein:", @@ -20757,26 +22813,7 @@ ] }, { - "prefix": "TAO", - "prefix_synonyms": [ - "TAO_RETIRED" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/TAO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/tao:", - "http://bioregistry.io/TAO:", - "http://bioregistry.io/TAO_RETIRED:", - "http://bioregistry.io/tao:", - "http://www.ebi.ac.uk/ols/ontologies/tao/terms?iri=http://purl.obolibrary.org/obo/TAO_", - "https://bio2rdf.org/tao:", - "https://bioregistry.io/TAO:", - "https://bioregistry.io/TAO_RETIRED:", - "https://bioregistry.io/tao:", - "https://purl.obolibrary.org/obo/TAO_", - "https://www.ebi.ac.uk/ols/ontologies/tao/terms?iri=http://purl.obolibrary.org/obo/TAO_" - ] - }, - { + "pattern": "^[a-z]{3}\\-(mir|let|lin)\\-\\w+(\\-\\w+\\-\\w+)$", "prefix": "tarbase", "uri_prefix": "http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=tarbase/index&mirnas=", "uri_prefix_synonyms": [ @@ -20792,21 +22829,7 @@ ] }, { - "prefix": "TAXRANK", - "uri_prefix": "http://purl.obolibrary.org/obo/TAXRANK_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/taxrank:", - "http://bioregistry.io/TAXRANK:", - "http://bioregistry.io/taxrank:", - "http://www.ebi.ac.uk/ols/ontologies/taxrank/terms?iri=http://purl.obolibrary.org/obo/TAXRANK_", - "https://bio2rdf.org/taxrank:", - "https://bioregistry.io/TAXRANK:", - "https://bioregistry.io/taxrank:", - "https://purl.obolibrary.org/obo/TAXRANK_", - "https://www.ebi.ac.uk/ols/ontologies/taxrank/terms?iri=http://purl.obolibrary.org/obo/TAXRANK_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "tcb", "uri_prefix": "https://www.pirbright.ac.uk/node/", "uri_prefix_synonyms": [ @@ -20827,6 +22850,7 @@ ] }, { + "pattern": "^\\d+(\\.[A-Z])?(\\.\\d+)?(\\.\\d+)?(\\.\\d+)?$", "prefix": "tcdb", "prefix_synonyms": [ "TC" @@ -20851,6 +22875,7 @@ ] }, { + "pattern": "^TCTR\\d+$", "prefix": "tctr", "uri_prefix": "https://www.thaiclinicaltrials.org/show/", "uri_prefix_synonyms": [ @@ -20869,6 +22894,7 @@ ] }, { + "pattern": "^TTHERM\\_\\d+$", "prefix": "tgd", "uri_prefix": "http://ciliate.org/index.php/feature/details/", "uri_prefix_synonyms": [ @@ -20886,21 +22912,7 @@ ] }, { - "prefix": "TGMA", - "uri_prefix": "http://purl.obolibrary.org/obo/TGMA_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/tgma:", - "http://bioregistry.io/TGMA:", - "http://bioregistry.io/tgma:", - "http://www.ebi.ac.uk/ols/ontologies/tgma/terms?iri=http://purl.obolibrary.org/obo/TGMA_", - "https://bio2rdf.org/tgma:", - "https://bioregistry.io/TGMA:", - "https://bioregistry.io/tgma:", - "https://purl.obolibrary.org/obo/TGMA_", - "https://www.ebi.ac.uk/ols/ontologies/tgma/terms?iri=http://purl.obolibrary.org/obo/TGMA_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "tgn", "uri_prefix": "http://vocab.getty.edu/page/tgn/", "uri_prefix_synonyms": [ @@ -20910,6 +22922,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "thermofisher", "uri_prefix": "https://www.thermofisher.com/antibody/product/", "uri_prefix_synonyms": [ @@ -20919,6 +22932,7 @@ ] }, { + "pattern": "^TIGR\\d+$", "prefix": "tigrfam", "uri_prefix": "https://www.ncbi.nlm.nih.gov/cdd?term=", "uri_prefix_synonyms": [ @@ -20949,6 +22963,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "tngb", "uri_prefix": "http://biobanknetwork.telethon.it/Sample/View?sampleId=", "uri_prefix_synonyms": [ @@ -20958,21 +22973,7 @@ ] }, { - "prefix": "TO", - "uri_prefix": "http://purl.obolibrary.org/obo/TO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/pto:", - "http://bioregistry.io/TO:", - "http://bioregistry.io/to:", - "http://www.ebi.ac.uk/ols/ontologies/to/terms?iri=http://purl.obolibrary.org/obo/TO_", - "https://bio2rdf.org/pto:", - "https://bioregistry.io/TO:", - "https://bioregistry.io/to:", - "https://purl.obolibrary.org/obo/TO_", - "https://www.ebi.ac.uk/ols/ontologies/to/terms?iri=http://purl.obolibrary.org/obo/TO_" - ] - }, - { + "pattern": "^tgv[0-9]+$", "prefix": "togovar", "uri_prefix": "https://grch38.togovar.org/variant/", "uri_prefix_synonyms": [ @@ -20986,6 +22987,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "tol", "prefix_synonyms": [ "tol.webproj" @@ -21006,6 +23008,7 @@ ] }, { + "pattern": "^[A-Z0-9]+$", "prefix": "topdb", "uri_prefix": "http://topdb.enzim.hu/?m=show&id=", "uri_prefix_synonyms": [ @@ -21023,6 +23026,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "toxoplasma", "uri_prefix": "http://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", "uri_prefix_synonyms": [ @@ -21037,21 +23041,6 @@ "https://toxodb.org/toxo/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=" ] }, - { - "prefix": "TRANS", - "uri_prefix": "http://purl.obolibrary.org/obo/TRANS_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/pt:", - "http://bioregistry.io/TRANS:", - "http://bioregistry.io/trans:", - "http://www.ebi.ac.uk/ols/ontologies/trans/terms?iri=http://purl.obolibrary.org/obo/TRANS_", - "https://bio2rdf.org/pt:", - "https://bioregistry.io/TRANS:", - "https://bioregistry.io/trans:", - "https://purl.obolibrary.org/obo/TRANS_", - "https://www.ebi.ac.uk/ols/ontologies/trans/terms?iri=http://purl.obolibrary.org/obo/TRANS_" - ] - }, { "prefix": "transportdb", "uri_prefix": "http://www.membranetransport.org/protein.php?pOID=mmar1&pSynonym=", @@ -21064,6 +23053,7 @@ ] }, { + "pattern": "^T[A-Z]\\d{7}$", "prefix": "transyt", "uri_prefix": "https://transyt.bio.di.uminho.pt/reactions/", "uri_prefix_synonyms": [ @@ -21088,6 +23078,7 @@ ] }, { + "pattern": "^TB[1,2]?:[A-Z][a-z]?\\d+$", "prefix": "treebase", "uri_prefix": "https://identifiers.org/treebase:", "uri_prefix_synonyms": [ @@ -21105,6 +23096,7 @@ ] }, { + "pattern": "^\\w{1,2}\\d+$", "prefix": "treefam", "uri_prefix": "http://www.treefam.org/family/", "uri_prefix_synonyms": [ @@ -21124,6 +23116,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "trichdb", "uri_prefix": "http://trichdb.org/trichdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", "uri_prefix_synonyms": [ @@ -21139,6 +23132,7 @@ ] }, { + "pattern": "^\\w+(\\.)?\\w+(\\.)?\\w+$", "prefix": "tritrypdb", "uri_prefix": "http://tritrypdb.org/tritrypdb/showRecord.do?name=GeneRecordClasses.GeneRecordClass&source_id=", "uri_prefix_synonyms": [ @@ -21167,99 +23161,51 @@ ] }, { - "prefix": "ttd.drug", - "uri_prefix": "http://bidd.nus.edu.sg/group/TTD/ZFTTDDRUG.asp?ID=", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ttd.drug:", - "http://identifiers.org/ttd.drug/", - "http://identifiers.org/ttd.drug:", - "http://n2t.net/ttd.drug:", - "https://bidd.nus.edu.sg/group/TTD/ZFTTDDRUG.asp?ID=", - "https://bioregistry.io/ttd.drug:", - "https://identifiers.org/ttd.drug/", - "https://identifiers.org/ttd.drug:", - "https://n2t.net/ttd.drug:" - ] - }, - { - "prefix": "ttd.target", - "uri_prefix": "http://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID=", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ttd.target:", - "http://identifiers.org/ttd.target/", - "http://identifiers.org/ttd.target:", - "http://n2t.net/ttd.target:", - "https://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID=", - "https://bioregistry.io/ttd.target:", - "https://identifiers.org/ttd.target/", - "https://identifiers.org/ttd.target:", - "https://n2t.net/ttd.target:" - ] - }, - { - "prefix": "TTO", - "uri_prefix": "http://purl.obolibrary.org/obo/TTO_", + "pattern": "^SD\\d+$", + "prefix": "tsc", + "uri_prefix": "https://tetrahymena.vet.cornell.edu/display.php?stockid=", "uri_prefix_synonyms": [ - "http://bio2rdf.org/tto:", - "http://bioregistry.io/TTO:", - "http://bioregistry.io/tto:", - "http://www.ebi.ac.uk/ols/ontologies/tto/terms?iri=http://purl.obolibrary.org/obo/TTO_", - "https://bio2rdf.org/tto:", - "https://bioregistry.io/TTO:", - "https://bioregistry.io/tto:", - "https://purl.obolibrary.org/obo/TTO_", - "https://www.ebi.ac.uk/ols/ontologies/tto/terms?iri=http://purl.obolibrary.org/obo/TTO_" + "http://bioregistry.io/tsc:", + "http://scicrunch.org/resolver/RRID:TSC_", + "http://tetrahymena.vet.cornell.edu/display.php?stockid=", + "https://bioregistry.io/tsc:", + "https://scicrunch.org/resolver/RRID:TSC_" ] }, { - "prefix": "TXPO", - "uri_prefix": "http://purl.obolibrary.org/obo/TXPO_", + "pattern": "^DAP\\d+$", + "prefix": "ttd.drug", + "uri_prefix": "http://bidd.nus.edu.sg/group/TTD/ZFTTDDRUG.asp?ID=", "uri_prefix_synonyms": [ - "http://bioregistry.io/TXPO:", - "http://bioregistry.io/txpo:", - "http://www.ebi.ac.uk/ols/ontologies/txpo/terms?iri=http://purl.obolibrary.org/obo/TXPO_", - "https://bioregistry.io/TXPO:", - "https://bioregistry.io/txpo:", - "https://purl.obolibrary.org/obo/TXPO_", - "https://www.ebi.ac.uk/ols/ontologies/txpo/terms?iri=http://purl.obolibrary.org/obo/TXPO_" + "http://bioregistry.io/ttd.drug:", + "http://identifiers.org/ttd.drug/", + "http://identifiers.org/ttd.drug:", + "http://n2t.net/ttd.drug:", + "https://bidd.nus.edu.sg/group/TTD/ZFTTDDRUG.asp?ID=", + "https://bioregistry.io/ttd.drug:", + "https://identifiers.org/ttd.drug/", + "https://identifiers.org/ttd.drug:", + "https://n2t.net/ttd.drug:" ] }, { - "prefix": "UBERON", - "prefix_synonyms": [ - "Uber-anatomy ontology", - "Uberon" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/UBERON_", + "pattern": "^TTDS\\d+$", + "prefix": "ttd.target", + "uri_prefix": "http://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID=", "uri_prefix_synonyms": [ - "http://bioregistry.io/UBERON:", - "http://bioregistry.io/Uber-anatomy ontology:", - "http://bioregistry.io/Uberon:", - "http://bioregistry.io/uberon:", - "http://identifiers.org/UBERON/", - "http://identifiers.org/UBERON:", - "http://identifiers.org/uberon/UBERON:", - "http://n2t.net/uberon:", - "http://onto.cellxgene-labs.prod.si.czi.technology/a/ontology/UBERON/UBERON:", - "http://purl.bioontology.org/ontology/UBERON/UBERON:", - "http://www.ebi.ac.uk/ols/ontologies/uberon/terms?iri=http://purl.obolibrary.org/obo/UBERON_", - "http://www.ebi.ac.uk/ols4/ontologies/uberon/terms?obo_id=UBERON:", - "https://bioregistry.io/UBERON:", - "https://bioregistry.io/Uber-anatomy ontology:", - "https://bioregistry.io/Uberon:", - "https://bioregistry.io/uberon:", - "https://identifiers.org/UBERON/", - "https://identifiers.org/UBERON:", - "https://identifiers.org/uberon/UBERON:", - "https://n2t.net/uberon:", - "https://onto.cellxgene-labs.prod.si.czi.technology/a/ontology/UBERON/UBERON:", - "https://purl.bioontology.org/ontology/UBERON/UBERON:", - "https://purl.obolibrary.org/obo/UBERON_", - "https://www.ebi.ac.uk/ols/ontologies/uberon/terms?iri=http://purl.obolibrary.org/obo/UBERON_", - "https://www.ebi.ac.uk/ols4/ontologies/uberon/terms?obo_id=UBERON:" + "http://bioregistry.io/ttd.target:", + "http://identifiers.org/ttd.target/", + "http://identifiers.org/ttd.target:", + "http://n2t.net/ttd.target:", + "https://bidd.nus.edu.sg/group/TTD/ZFTTDDetail.asp?ID=", + "https://bioregistry.io/ttd.target:", + "https://identifiers.org/ttd.target/", + "https://identifiers.org/ttd.target:", + "https://n2t.net/ttd.target:" ] }, { + "pattern": "^\\d+$", "prefix": "ubio.namebank", "uri_prefix": "http://www.ubio.org/browser/details.php?namebankID=", "uri_prefix_synonyms": [ @@ -21296,6 +23242,7 @@ ] }, { + "pattern": "^c\\d+$", "prefix": "umbbd.compound", "prefix_synonyms": [ "UM-BBD_compID" @@ -21318,6 +23265,7 @@ ] }, { + "pattern": "^e\\d+$", "prefix": "umbbd.enzyme", "prefix_synonyms": [ "UM-BBD_enzymeID" @@ -21340,6 +23288,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "umbbd.pathway", "prefix_synonyms": [ "UM-BBD_pathwayID" @@ -21360,6 +23309,7 @@ ] }, { + "pattern": "^r\\d+$", "prefix": "umbbd.reaction", "prefix_synonyms": [ "UM-BBD_reactionID" @@ -21382,6 +23332,7 @@ ] }, { + "pattern": "^bt\\d+$", "prefix": "umbbd.rule", "prefix_synonyms": [ "UM-BBD_ruleID" @@ -21404,47 +23355,7 @@ ] }, { - "prefix": "UMLS", - "prefix_synonyms": [ - "UMLS CUI", - "UMLS_CUI", - "sider.effect", - "umls.cui" - ], - "uri_prefix": "http://linkedlifedata.com/resource/umls/id/", - "uri_prefix_synonyms": [ - "http://bioregistry.io/UMLS CUI:", - "http://bioregistry.io/UMLS:", - "http://bioregistry.io/UMLS_CUI:", - "http://bioregistry.io/sider.effect:", - "http://bioregistry.io/umls.cui:", - "http://bioregistry.io/umls:", - "http://identifiers.org/sider.effect/", - "http://identifiers.org/sider.effect:", - "http://identifiers.org/umls/", - "http://identifiers.org/umls:", - "http://n2t.net/sider.effect:", - "http://n2t.net/umls:", - "http://ncim-stage.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20Metathesaurus&code=", - "http://sideeffects.embl.de/se/", - "https://bioregistry.io/UMLS CUI:", - "https://bioregistry.io/UMLS:", - "https://bioregistry.io/UMLS_CUI:", - "https://bioregistry.io/sider.effect:", - "https://bioregistry.io/umls.cui:", - "https://bioregistry.io/umls:", - "https://identifiers.org/sider.effect/", - "https://identifiers.org/sider.effect:", - "https://identifiers.org/umls/", - "https://identifiers.org/umls:", - "https://linkedlifedata.com/resource/umls/id/", - "https://n2t.net/sider.effect:", - "https://n2t.net/umls:", - "https://ncim-stage.nci.nih.gov/ncimbrowser/ConceptReport.jsp?dictionary=NCI%20Metathesaurus&code=", - "https://sideeffects.embl.de/se/" - ] - }, - { + "pattern": "^\\d+$", "prefix": "unichem", "uri_prefix": "https://www.ebi.ac.uk/unichem/compoundsources?type=uci&compound=", "uri_prefix_synonyms": [ @@ -21454,6 +23365,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "unigene", "uri_prefix": "http://www.ncbi.nlm.nih.gov/UniGene/clust.cgi?UGID=", "uri_prefix_synonyms": [ @@ -21471,12 +23383,14 @@ ] }, { + "pattern": "^[A-Z0-9]+$", "prefix": "unii", "uri_prefix": "https://precision.fda.gov/uniisearch/srs/unii/", "uri_prefix_synonyms": [ "http://bioregistry.io/unii:", "http://fdasis.nlm.nih.gov/srs/srsdirect.jsp?regno=", "http://fdasis.nlm.nih.gov/srs/unii/", + "http://gsrs.ncats.nih.gov/ginas/app/beta/substances/", "http://identifiers.org/unii/", "http://identifiers.org/unii:", "http://n2t.net/unii:", @@ -21484,12 +23398,14 @@ "https://bioregistry.io/unii:", "https://fdasis.nlm.nih.gov/srs/srsdirect.jsp?regno=", "https://fdasis.nlm.nih.gov/srs/unii/", + "https://gsrs.ncats.nih.gov/ginas/app/beta/substances/", "https://identifiers.org/unii/", "https://identifiers.org/unii:", "https://n2t.net/unii:" ] }, { + "pattern": "^\\d+$", "prefix": "unimod", "uri_prefix": "http://www.unimod.org/modifications_view.php?editid1=", "uri_prefix_synonyms": [ @@ -21505,6 +23421,7 @@ ] }, { + "pattern": "^UPI[A-F0-9]{10}$", "prefix": "uniparc", "uri_prefix": "https://www.ebi.ac.uk/cgi-bin/dbfetch?db=uniparc&id=", "uri_prefix_synonyms": [ @@ -21524,6 +23441,7 @@ ] }, { + "pattern": "^UPC\\d{5}$", "prefix": "unipathway.compound", "uri_prefix": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upc?upid=", "uri_prefix_synonyms": [ @@ -21539,6 +23457,7 @@ ] }, { + "pattern": "^UCR\\d{5}$", "prefix": "unipathway.reaction", "uri_prefix": "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/ucr?upid=", "uri_prefix_synonyms": [ @@ -21554,6 +23473,7 @@ ] }, { + "pattern": "^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\.\\d+)?$", "prefix": "uniprot", "prefix_synonyms": [ "SwissProt", @@ -21610,6 +23530,7 @@ "http://cicblade.dep.usal.es:8080/APID/Interactions.action?protein=", "http://clipserve.clip.ubc.ca/topfind/proteins/", "http://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=", + "http://go.drugbank.com/polypeptides/", "http://identifiers.org/apid.interactions/", "http://identifiers.org/apid.interactions:", "http://identifiers.org/bykdb/", @@ -21699,6 +23620,7 @@ "https://cicblade.dep.usal.es:8080/APID/Interactions.action?protein=", "https://clipserve.clip.ubc.ca/topfind/proteins/", "https://compluyeast2dpage.dacya.ucm.es/cgi-bin/2d/2d.cgi?ac=", + "https://go.drugbank.com/polypeptides/", "https://identifiers.org/apid.interactions/", "https://identifiers.org/apid.interactions:", "https://identifiers.org/bykdb/", @@ -21759,6 +23681,7 @@ ] }, { + "pattern": "^ARBA\\d+$", "prefix": "uniprot.arba", "prefix_synonyms": [ "arba" @@ -21773,6 +23696,7 @@ ] }, { + "pattern": "^PRO_[0-9]{10}$", "prefix": "uniprot.chain", "prefix_synonyms": [ "UPPRO" @@ -21791,6 +23715,7 @@ ] }, { + "pattern": "^DI-\\d{5}$", "prefix": "uniprot.disease", "prefix_synonyms": [ "DI", @@ -21808,6 +23733,7 @@ ] }, { + "pattern": "^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\\-\\d+)$", "prefix": "uniprot.isoform", "prefix_synonyms": [ "UPISO" @@ -21832,6 +23758,7 @@ ] }, { + "pattern": "^\\d{4}$", "prefix": "uniprot.journal", "uri_prefix": "http://purl.uniprot.org/journals/", "uri_prefix_synonyms": [ @@ -21843,6 +23770,7 @@ ] }, { + "pattern": "^KW-\\d{4}$", "prefix": "uniprot.keyword", "prefix_synonyms": [ "SP_KW", @@ -21865,6 +23793,7 @@ ] }, { + "pattern": "^SL-\\d+$", "prefix": "uniprot.location", "prefix_synonyms": [ "SP_SL", @@ -21885,6 +23814,7 @@ ] }, { + "pattern": "^UP\\d{9}$", "prefix": "uniprot.proteome", "uri_prefix": "https://www.uniprot.org/proteomes/", "uri_prefix_synonyms": [ @@ -21894,6 +23824,7 @@ ] }, { + "pattern": "^PTM-\\d{4}$", "prefix": "uniprot.ptm", "prefix_synonyms": [ "PTM" @@ -21908,6 +23839,7 @@ ] }, { + "pattern": "^DB-\\d{4}$", "prefix": "uniprot.resource", "prefix_synonyms": [ "uniprot.database", @@ -21925,6 +23857,7 @@ ] }, { + "pattern": "^TS-\\d{4}$", "prefix": "uniprot.tissue", "uri_prefix": "https://www.uniprot.org/tissues/", "uri_prefix_synonyms": [ @@ -21940,6 +23873,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "uniprot.var", "prefix_synonyms": [ "SP_VAR", @@ -21960,6 +23894,7 @@ ] }, { + "pattern": "^UniRef(100|90|50)_([OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z][0-9]([A-Z][A-Z0-9]{2}[0-9]){1,2}|UPI[A-F0-9]{10})$", "prefix": "uniref", "uri_prefix": "https://www.uniprot.org/uniref/", "uri_prefix_synonyms": [ @@ -21982,6 +23917,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "unists", "uri_prefix": "https://www.ncbi.nlm.nih.gov/genome/sts/sts.cgi?uid=", "uri_prefix_synonyms": [ @@ -21999,6 +23935,7 @@ ] }, { + "pattern": "^UDB\\d{6}$", "prefix": "unite", "uri_prefix": "http://unite.ut.ee/bl_forw.php?nimi=", "uri_prefix_synonyms": [ @@ -22016,72 +23953,7 @@ ] }, { - "prefix": "UO", - "uri_prefix": "http://purl.obolibrary.org/obo/UO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/uo:", - "http://bioregistry.io/UO:", - "http://bioregistry.io/uo:", - "http://identifiers.org/UO/", - "http://identifiers.org/UO:", - "http://identifiers.org/uo/UO:", - "http://n2t.net/uo:", - "http://purl.bioontology.org/ontology/UO/UO:", - "http://www.ebi.ac.uk/ols/ontologies/uo/terms?iri=http://purl.obolibrary.org/obo/UO_", - "https://bio2rdf.org/uo:", - "https://bioregistry.io/UO:", - "https://bioregistry.io/uo:", - "https://identifiers.org/UO/", - "https://identifiers.org/UO:", - "https://identifiers.org/uo/UO:", - "https://n2t.net/uo:", - "https://purl.bioontology.org/ontology/UO/UO:", - "https://purl.obolibrary.org/obo/UO_", - "https://www.ebi.ac.uk/ols/ontologies/uo/terms?iri=http://purl.obolibrary.org/obo/UO_" - ] - }, - { - "prefix": "UPA", - "prefix_synonyms": [ - "UPa", - "unipathway", - "unipathway.pathway" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/UPA_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/unipathway:", - "http://bioregistry.io/UPA:", - "http://bioregistry.io/UPa:", - "http://bioregistry.io/unipathway.pathway:", - "http://bioregistry.io/unipathway:", - "http://bioregistry.io/upa:", - "http://www.ebi.ac.uk/ols/ontologies/upa/terms?iri=http://purl.obolibrary.org/obo/UPA_", - "http://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=", - "https://bio2rdf.org/unipathway:", - "https://bioregistry.io/UPA:", - "https://bioregistry.io/UPa:", - "https://bioregistry.io/unipathway.pathway:", - "https://bioregistry.io/unipathway:", - "https://bioregistry.io/upa:", - "https://purl.obolibrary.org/obo/UPA_", - "https://www.ebi.ac.uk/ols/ontologies/upa/terms?iri=http://purl.obolibrary.org/obo/UPA_", - "https://www.grenoble.prabi.fr/obiwarehouse/unipathway/upa?upid=" - ] - }, - { - "prefix": "UPHENO", - "uri_prefix": "http://purl.obolibrary.org/obo/UPHENO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/UPHENO:", - "http://bioregistry.io/upheno:", - "http://www.ebi.ac.uk/ols/ontologies/upheno/terms?iri=http://purl.obolibrary.org/obo/UPHENO_", - "https://bioregistry.io/UPHENO:", - "https://bioregistry.io/upheno:", - "https://purl.obolibrary.org/obo/UPHENO_", - "https://www.ebi.ac.uk/ols/ontologies/upheno/terms?iri=http://purl.obolibrary.org/obo/UPHENO_" - ] - }, - { + "pattern": "^(\\d{1,2},?\\d{3},?\\d{3}|(PP|RE|AI|RX)\\d{2},?\\d{3}|(D|T|H|X)\\d{3},?\\d{3})$", "prefix": "uspto", "uri_prefix": "http://patft.uspto.gov/netacgi/nph-Parser?Sect2=PTO1&Sect2=HITOFF&p=1&u=/netahtml/PTO/search-bool.html&r=1&f=G&l=50&d=PALL&RefSrch=yes&Query=PN/", "uri_prefix_synonyms": [ @@ -22097,6 +23969,7 @@ ] }, { + "pattern": "^([3-5][A-Z])\\w+[^A-Z][0-9]$", "prefix": "utrdb", "uri_prefix": "https://utrdb.cloud.ba.infn.it/cgi-bin/utrdb/utrdb?e=", "uri_prefix_synonyms": [ @@ -22110,6 +23983,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "vac", "uri_prefix": "https://vac.niaid.nih.gov/view?id=", "uri_prefix_synonyms": [ @@ -22119,6 +23993,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "vandf", "uri_prefix": "http://purl.bioontology.org/ontology/VANDF/", "uri_prefix_synonyms": [ @@ -22137,29 +24012,7 @@ ] }, { - "prefix": "VariO", - "uri_prefix": "http://purl.obolibrary.org/obo/VariO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/VariO:", - "http://bioregistry.io/vario:", - "http://identifiers.org/VARIO/", - "http://identifiers.org/VARIO:", - "http://identifiers.org/vario/VariO:", - "http://n2t.net/vario:", - "http://purl.bioontology.org/ontology/VARIO/VariO:", - "http://www.ebi.ac.uk/ols/ontologies/vario/terms?iri=http://purl.obolibrary.org/obo/VariO_", - "https://bioregistry.io/VariO:", - "https://bioregistry.io/vario:", - "https://identifiers.org/VARIO/", - "https://identifiers.org/VARIO:", - "https://identifiers.org/vario/VariO:", - "https://n2t.net/vario:", - "https://purl.bioontology.org/ontology/VARIO/VariO:", - "https://purl.obolibrary.org/obo/VariO_", - "https://www.ebi.ac.uk/ols/ontologies/vario/terms?iri=http://purl.obolibrary.org/obo/VariO_" - ] - }, - { + "pattern": "^\\w+$", "prefix": "vbase2", "uri_prefix": "http://www.vbase2.org/vgene.php?id=", "uri_prefix_synonyms": [ @@ -22177,19 +24030,7 @@ ] }, { - "prefix": "VBO", - "uri_prefix": "http://purl.obolibrary.org/obo/VBO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/VBO:", - "http://bioregistry.io/vbo:", - "http://www.ebi.ac.uk/ols/ontologies/vbo/terms?iri=http://purl.obolibrary.org/obo/VBO_", - "https://bioregistry.io/VBO:", - "https://bioregistry.io/vbo:", - "https://purl.obolibrary.org/obo/VBO_", - "https://www.ebi.ac.uk/ols/ontologies/vbo/terms?iri=http://purl.obolibrary.org/obo/VBO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "vbrc", "uri_prefix": "http://vbrc.org/gene_detail.asp?gene_id=", "uri_prefix_synonyms": [ @@ -22207,6 +24048,7 @@ ] }, { + "pattern": "^\\d{5,}$", "prefix": "vcell", "uri_prefix": "https://vcell.org/biomodel-", "uri_prefix_synonyms": [ @@ -22220,6 +24062,7 @@ ] }, { + "pattern": "^\\D{4}\\d{6}(\\-\\D{2})?$", "prefix": "vectorbase", "uri_prefix": "https://vectorbase.org/gene/", "uri_prefix_synonyms": [ @@ -22257,6 +24100,7 @@ ] }, { + "pattern": "^VB\\.[A-Za-z][A-Za-z]\\..*$", "prefix": "vegbank", "uri_prefix": "http://vegbank.org/cite/", "uri_prefix_synonyms": [ @@ -22270,6 +24114,7 @@ ] }, { + "pattern": "^[0-9a-zA-Z]{8}$", "prefix": "vfb", "uri_prefix": "http://virtualflybrain.org/reports/", "uri_prefix_synonyms": [ @@ -22285,6 +24130,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "vfdb.gene", "uri_prefix": "http://www.mgc.ac.cn/cgi-bin/VFs/gene.cgi?GeneID=", "uri_prefix_synonyms": [ @@ -22300,6 +24146,7 @@ ] }, { + "pattern": "^\\w+$", "prefix": "vfdb.genus", "uri_prefix": "http://www.mgc.ac.cn/cgi-bin/VFs/genus.cgi?Genus=", "uri_prefix_synonyms": [ @@ -22315,6 +24162,7 @@ ] }, { + "pattern": "^\\d{1,9}$", "prefix": "vgnc", "uri_prefix": "https://vertebrate.genenames.org/data/gene-symbol-report/#!/vgnc_id/", "uri_prefix_synonyms": [ @@ -22330,24 +24178,7 @@ ] }, { - "prefix": "VHOG", - "prefix_synonyms": [ - "VHOG_RETIRED" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/VHOG_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/vhog:", - "http://bioregistry.io/VHOG:", - "http://bioregistry.io/VHOG_RETIRED:", - "http://bioregistry.io/vhog:", - "https://bio2rdf.org/vhog:", - "https://bioregistry.io/VHOG:", - "https://bioregistry.io/VHOG_RETIRED:", - "https://bioregistry.io/vhog:", - "https://purl.obolibrary.org/obo/VHOG_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "viaf", "uri_prefix": "http://viaf.org/viaf/", "uri_prefix_synonyms": [ @@ -22367,6 +24198,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "vido", "uri_prefix": "http://purl.obolibrary.org/obo/VIDO_", "uri_prefix_synonyms": [ @@ -22378,6 +24210,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "violinnet", "prefix_synonyms": [ "violinID", @@ -22395,6 +24228,7 @@ ] }, { + "pattern": "^[A-Za-z 0-9]+$", "prefix": "vipr", "uri_prefix": "https://identifiers.org/vipr:", "uri_prefix_synonyms": [ @@ -22408,6 +24242,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "viralzone", "prefix_synonyms": [ "vz" @@ -22443,6 +24278,7 @@ ] }, { + "pattern": "^virsi\\d+$", "prefix": "virsirna", "uri_prefix": "http://crdd.osdd.net/servers/virsirnadb/record.php?details=", "uri_prefix_synonyms": [ @@ -22469,6 +24305,7 @@ ] }, { + "pattern": "^[0-9]+\\.[0-9]+$", "prefix": "vmhgene", "uri_prefix": "https://www.vmh.life/#gene/", "uri_prefix_synonyms": [ @@ -22482,6 +24319,7 @@ ] }, { + "pattern": "^[a-zA-Z0-9_\\(\\_\\)\\[\\]]+$", "prefix": "vmhmetabolite", "uri_prefix": "https://www.vmh.life/#metabolite/", "uri_prefix_synonyms": [ @@ -22499,6 +24337,7 @@ ] }, { + "pattern": "^[a-zA-Z0-9_\\(\\_\\)\\[\\]]+$", "prefix": "vmhreaction", "uri_prefix": "https://www.vmh.life/#reaction/", "uri_prefix_synonyms": [ @@ -22516,47 +24355,22 @@ ] }, { - "prefix": "VO", - "uri_prefix": "http://purl.obolibrary.org/obo/VO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/vo:", - "http://bioregistry.io/VO:", - "http://bioregistry.io/vo:", - "http://www.ebi.ac.uk/ols/ontologies/vo/terms?iri=http://purl.obolibrary.org/obo/VO_", - "https://bio2rdf.org/vo:", - "https://bioregistry.io/VO:", - "https://bioregistry.io/vo:", - "https://purl.obolibrary.org/obo/VO_", - "https://www.ebi.ac.uk/ols/ontologies/vo/terms?iri=http://purl.obolibrary.org/obo/VO_" - ] - }, - { - "prefix": "void", - "uri_prefix": "http://rdfs.org/ns/void#", + "pattern": "^\\d{7,}$", + "prefix": "voc4cat", + "uri_prefix": "https://w3id.org/nfdi4cat/voc4cat_", "uri_prefix_synonyms": [ - "http://bioregistry.io/void:", - "https://bioregistry.io/void:", - "https://rdfs.org/ns/void#" + "http://bioregistry.io/voc4cat:", + "http://w3id.org/nfdi4cat/voc4cat_", + "https://bioregistry.io/voc4cat:" ] }, { - "prefix": "VSAO", - "prefix_synonyms": [ - "VSAO_RETIRED" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/VSAO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/vao:", - "http://bioregistry.io/VSAO:", - "http://bioregistry.io/VSAO_RETIRED:", - "http://bioregistry.io/vsao:", - "http://www.ebi.ac.uk/ols/ontologies/vsao/terms?iri=http://purl.obolibrary.org/obo/VSAO_", - "https://bio2rdf.org/vao:", - "https://bioregistry.io/VSAO:", - "https://bioregistry.io/VSAO_RETIRED:", - "https://bioregistry.io/vsao:", - "https://purl.obolibrary.org/obo/VSAO_", - "https://www.ebi.ac.uk/ols/ontologies/vsao/terms?iri=http://purl.obolibrary.org/obo/VSAO_" + "prefix": "void", + "uri_prefix": "http://rdfs.org/ns/void#", + "uri_prefix_synonyms": [ + "http://bioregistry.io/void:", + "https://bioregistry.io/void:", + "https://rdfs.org/ns/void#" ] }, { @@ -22569,6 +24383,7 @@ ] }, { + "pattern": "^\\d{7}$", "prefix": "vso", "uri_prefix": "https://bioportal.bioontology.org/ontologies/VSO/?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FVSO_", "uri_prefix_synonyms": [ @@ -22580,34 +24395,7 @@ ] }, { - "prefix": "VT", - "uri_prefix": "http://purl.obolibrary.org/obo/VT_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/vt:", - "http://bioregistry.io/VT:", - "http://bioregistry.io/vt:", - "http://www.ebi.ac.uk/ols/ontologies/vt/terms?iri=http://purl.obolibrary.org/obo/VT_", - "https://bio2rdf.org/vt:", - "https://bioregistry.io/VT:", - "https://bioregistry.io/vt:", - "https://purl.obolibrary.org/obo/VT_", - "https://www.ebi.ac.uk/ols/ontologies/vt/terms?iri=http://purl.obolibrary.org/obo/VT_" - ] - }, - { - "prefix": "VTO", - "uri_prefix": "http://purl.obolibrary.org/obo/VTO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/VTO:", - "http://bioregistry.io/vto:", - "http://www.ebi.ac.uk/ols/ontologies/vto/terms?iri=http://purl.obolibrary.org/obo/VTO_", - "https://bioregistry.io/VTO:", - "https://bioregistry.io/vto:", - "https://purl.obolibrary.org/obo/VTO_", - "https://www.ebi.ac.uk/ols/ontologies/vto/terms?iri=http://purl.obolibrary.org/obo/VTO_" - ] - }, - { + "pattern": "^WBRNAi\\d{8}$", "prefix": "wb.rnai", "uri_prefix": "https://www.wormbase.org/species/c_elegans/rnai/", "uri_prefix_synonyms": [ @@ -22623,53 +24411,7 @@ ] }, { - "prefix": "WBbt", - "uri_prefix": "http://purl.obolibrary.org/obo/WBbt_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/wbbt:", - "http://bioregistry.io/WBbt:", - "http://bioregistry.io/wbbt:", - "http://wormbase.org/db/ontology/anatomy?name=", - "http://www.ebi.ac.uk/ols/ontologies/wbbt/terms?iri=http://purl.obolibrary.org/obo/WBbt_", - "https://bio2rdf.org/wbbt:", - "https://bioregistry.io/WBbt:", - "https://bioregistry.io/wbbt:", - "https://purl.obolibrary.org/obo/WBbt_", - "https://wormbase.org/db/ontology/anatomy?name=", - "https://www.ebi.ac.uk/ols/ontologies/wbbt/terms?iri=http://purl.obolibrary.org/obo/WBbt_" - ] - }, - { - "prefix": "WBls", - "uri_prefix": "http://purl.obolibrary.org/obo/WBls_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/wbls:", - "http://bioregistry.io/WBls:", - "http://bioregistry.io/wbls:", - "http://www.ebi.ac.uk/ols/ontologies/wbls/terms?iri=http://purl.obolibrary.org/obo/WBls_", - "https://bio2rdf.org/wbls:", - "https://bioregistry.io/WBls:", - "https://bioregistry.io/wbls:", - "https://purl.obolibrary.org/obo/WBls_", - "https://www.ebi.ac.uk/ols/ontologies/wbls/terms?iri=http://purl.obolibrary.org/obo/WBls_" - ] - }, - { - "prefix": "WBPhenotype", - "uri_prefix": "http://purl.obolibrary.org/obo/WBPhenotype_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/wbphenotype:", - "http://bioregistry.io/WBPhenotype:", - "http://bioregistry.io/wbphenotype:", - "http://www.ebi.ac.uk/ols/ontologies/wbphenotype/terms?iri=http://purl.obolibrary.org/obo/WBPhenotype_", - "https://bio2rdf.org/wbphenotype:", - "https://bioregistry.io/WBPhenotype:", - "https://bioregistry.io/wbphenotype:", - "https://purl.obolibrary.org/obo/WBPhenotype_", - "https://www.ebi.ac.uk/ols/ontologies/wbphenotype/terms?iri=http://purl.obolibrary.org/obo/WBPhenotype_" - ] - }, - { + "pattern": "^\\w+$", "prefix": "webelements", "uri_prefix": "https://www.webelements.com/", "uri_prefix_synonyms": [ @@ -22688,6 +24430,7 @@ ] }, { + "pattern": "^(Q|P)\\d+$", "prefix": "wikidata", "prefix_synonyms": [ "WD_Entity", @@ -22715,6 +24458,7 @@ ] }, { + "pattern": "^P\\d+$", "prefix": "wikidata.property", "uri_prefix": "https://www.wikidata.org/wiki/Property:", "uri_prefix_synonyms": [ @@ -22724,6 +24468,7 @@ ] }, { + "pattern": "^WP\\d{1,5}(\\_r\\d+)?$", "prefix": "wikipathways", "uri_prefix": "http://identifiers.org/wikipathways/", "uri_prefix_synonyms": [ @@ -22756,6 +24501,7 @@ ] }, { + "pattern": "^\\S+$", "prefix": "wikipedia.en", "prefix_synonyms": [ "wikipedia" @@ -22782,6 +24528,7 @@ ] }, { + "pattern": "^\\w+(\\.\\d+)$", "prefix": "worfdb", "uri_prefix": "http://worfdb.dfci.harvard.edu/index.php?search_type=name&page=showresultrc&race_query=", "uri_prefix_synonyms": [ @@ -22823,38 +24570,7 @@ ] }, { - "prefix": "WormBase", - "prefix_synonyms": [ - "WB_REF", - "wb", - "wormbase" - ], - "uri_prefix": "https://www.wormbase.org/get?name=", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/wormbase:", - "http://bioregistry.io/WB_REF:", - "http://bioregistry.io/WormBase:", - "http://bioregistry.io/wb:", - "http://bioregistry.io/wormbase:", - "http://identifiers.org/wb/", - "http://identifiers.org/wb:", - "http://n2t.net/wb:", - "http://www.alliancegenome.org/gene/WB:", - "http://www.wormbase.org/get?name=", - "http://www.wormbase.org/species/c_elegans/gene/", - "https://bio2rdf.org/wormbase:", - "https://bioregistry.io/WB_REF:", - "https://bioregistry.io/WormBase:", - "https://bioregistry.io/wb:", - "https://bioregistry.io/wormbase:", - "https://identifiers.org/wb/", - "https://identifiers.org/wb:", - "https://n2t.net/wb:", - "https://www.alliancegenome.org/gene/WB:", - "https://www.wormbase.org/species/c_elegans/gene/" - ] - }, - { + "pattern": "^CE\\d{5}$", "prefix": "wormpep", "uri_prefix": "https://www.wormbase.org/db/seq/protein?name=", "uri_prefix_synonyms": [ @@ -22874,6 +24590,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "worms", "uri_prefix": "http://www.marinespecies.org/aphia.php?p=taxdetails&id=", "uri_prefix_synonyms": [ @@ -22889,6 +24606,24 @@ ] }, { + "prefix": "wos", + "prefix_synonyms": [ + "wosid", + "wosuid" + ], + "uri_prefix": "https://www.webofscience.com/wos/woscc/full-record/WOS:", + "uri_prefix_synonyms": [ + "http://bioregistry.io/wos:", + "http://bioregistry.io/wosid:", + "http://bioregistry.io/wosuid:", + "http://www.webofscience.com/wos/woscc/full-record/WOS:", + "https://bioregistry.io/wos:", + "https://bioregistry.io/wosid:", + "https://bioregistry.io/wosuid:" + ] + }, + { + "pattern": "^AT\\d+$", "prefix": "wwf.ecoregion", "prefix_synonyms": [ "WWF" @@ -22903,36 +24638,7 @@ ] }, { - "prefix": "XAO", - "uri_prefix": "http://purl.obolibrary.org/obo/XAO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/XAO:", - "http://bioregistry.io/xao:", - "http://www.ebi.ac.uk/ols/ontologies/xao/terms?iri=http://purl.obolibrary.org/obo/XAO_", - "https://bioregistry.io/XAO:", - "https://bioregistry.io/xao:", - "https://purl.obolibrary.org/obo/XAO_", - "https://www.ebi.ac.uk/ols/ontologies/xao/terms?iri=http://purl.obolibrary.org/obo/XAO_" - ] - }, - { - "prefix": "XCO", - "uri_prefix": "http://purl.obolibrary.org/obo/XCO_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/xco:", - "http://bioregistry.io/XCO:", - "http://bioregistry.io/xco:", - "http://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=XCO:", - "http://www.ebi.ac.uk/ols/ontologies/xco/terms?iri=http://purl.obolibrary.org/obo/XCO_", - "https://bio2rdf.org/xco:", - "https://bioregistry.io/XCO:", - "https://bioregistry.io/xco:", - "https://purl.obolibrary.org/obo/XCO_", - "https://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=XCO:", - "https://www.ebi.ac.uk/ols/ontologies/xco/terms?iri=http://purl.obolibrary.org/obo/XCO_" - ] - }, - { + "pattern": "^XB\\-\\w+\\-\\d+$", "prefix": "xenbase", "prefix_synonyms": [ "Xenbase" @@ -22959,6 +24665,7 @@ ] }, { + "pattern": "^\\d+$", "prefix": "ximbio", "uri_prefix": "https://ximbio.com/reagent/", "uri_prefix_synonyms": [ @@ -22968,19 +24675,7 @@ ] }, { - "prefix": "XLMOD", - "uri_prefix": "http://purl.obolibrary.org/obo/XLMOD_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/XLMOD:", - "http://bioregistry.io/xlmod:", - "http://www.ebi.ac.uk/ols/ontologies/xlmod/terms?iri=http://purl.obolibrary.org/obo/XLMOD_", - "https://bioregistry.io/XLMOD:", - "https://bioregistry.io/xlmod:", - "https://purl.obolibrary.org/obo/XLMOD_", - "https://www.ebi.ac.uk/ols/ontologies/xlmod/terms?iri=http://purl.obolibrary.org/obo/XLMOD_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "xmetdb", "uri_prefix": "http://www.xmetdb.org/xmetdb/protocol/", "uri_prefix_synonyms": [ @@ -23000,19 +24695,6 @@ "https://www.w3.org/XML/1998/namespace#" ] }, - { - "prefix": "XPO", - "uri_prefix": "http://purl.obolibrary.org/obo/XPO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/XPO:", - "http://bioregistry.io/xpo:", - "http://www.ebi.ac.uk/ols/ontologies/xpo/terms?iri=http://purl.obolibrary.org/obo/XPO_", - "https://bioregistry.io/XPO:", - "https://bioregistry.io/xpo:", - "https://purl.obolibrary.org/obo/XPO_", - "https://www.ebi.ac.uk/ols/ontologies/xpo/terms?iri=http://purl.obolibrary.org/obo/XPO_" - ] - }, { "prefix": "xsd", "uri_prefix": "http://www.w3.org/2001/XMLSchema#", @@ -23023,6 +24705,7 @@ ] }, { + "pattern": "^Y[A-Z]{2}\\d+[CW]$", "prefix": "ydpm", "uri_prefix": "http://www-deletion.stanford.edu/cgi-bin/YDPM/YDPM_search.cgi?thelist=", "uri_prefix_synonyms": [ @@ -23040,6 +24723,7 @@ ] }, { + "pattern": "^[A-Z0-9]+$", "prefix": "yeastintron", "uri_prefix": "http://intron.ucsc.edu/cgi-bin/yeast4.3/intronreports.pl?outputformat=full&orfName=", "uri_prefix_synonyms": [ @@ -23066,6 +24750,7 @@ ] }, { + "pattern": "^\\w+\\_\\d+(\\.\\d+)?$", "prefix": "yetfasco", "uri_prefix": "http://yetfasco.ccbr.utoronto.ca/showPFM.php?mot=", "uri_prefix_synonyms": [ @@ -23081,6 +24766,7 @@ ] }, { + "pattern": "^[A-Z0-9]+$", "prefix": "yid", "uri_prefix": "http://metarray.ucsc.edu/cgi-bin/intron/yirIntrondb?orfName=", "uri_prefix_synonyms": [ @@ -23096,6 +24782,7 @@ ] }, { + "pattern": "^YMDB\\d+$", "prefix": "ymdb", "uri_prefix": "http://www.ymdb.ca/compounds/", "uri_prefix_synonyms": [ @@ -23105,17 +24792,7 @@ ] }, { - "prefix": "YPO", - "uri_prefix": "http://purl.obolibrary.org/obo/YPO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/YPO:", - "http://bioregistry.io/ypo:", - "https://bioregistry.io/YPO:", - "https://bioregistry.io/ypo:", - "https://purl.obolibrary.org/obo/YPO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "yrcpdr", "uri_prefix": "http://yeastrc.org/pdr/viewProtein.do?id=", "uri_prefix_synonyms": [ @@ -23135,32 +24812,7 @@ ] }, { - "prefix": "ZEA", - "uri_prefix": "http://purl.obolibrary.org/obo/ZEA_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/zea:", - "http://bioregistry.io/ZEA:", - "http://bioregistry.io/zea:", - "https://bio2rdf.org/zea:", - "https://bioregistry.io/ZEA:", - "https://bioregistry.io/zea:", - "https://purl.obolibrary.org/obo/ZEA_" - ] - }, - { - "prefix": "ZECO", - "uri_prefix": "http://purl.obolibrary.org/obo/ZECO_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ZECO:", - "http://bioregistry.io/zeco:", - "http://www.ebi.ac.uk/ols/ontologies/zeco/terms?iri=http://purl.obolibrary.org/obo/ZECO_", - "https://bioregistry.io/ZECO:", - "https://bioregistry.io/zeco:", - "https://purl.obolibrary.org/obo/ZECO_", - "https://www.ebi.ac.uk/ols/ontologies/zeco/terms?iri=http://purl.obolibrary.org/obo/ZECO_" - ] - }, - { + "pattern": "^\\d+$", "prefix": "zenodo.record", "prefix_synonyms": [ "zenodo" @@ -23175,26 +24827,7 @@ ] }, { - "prefix": "ZFA", - "prefix_synonyms": [ - "ZFA_RETIRED" - ], - "uri_prefix": "http://purl.obolibrary.org/obo/ZFA_", - "uri_prefix_synonyms": [ - "http://bio2rdf.org/zfa:", - "http://bioregistry.io/ZFA:", - "http://bioregistry.io/ZFA_RETIRED:", - "http://bioregistry.io/zfa:", - "http://www.ebi.ac.uk/ols/ontologies/zfa/terms?iri=http://purl.obolibrary.org/obo/ZFA_", - "https://bio2rdf.org/zfa:", - "https://bioregistry.io/ZFA:", - "https://bioregistry.io/ZFA_RETIRED:", - "https://bioregistry.io/zfa:", - "https://purl.obolibrary.org/obo/ZFA_", - "https://www.ebi.ac.uk/ols/ontologies/zfa/terms?iri=http://purl.obolibrary.org/obo/ZFA_" - ] - }, - { + "pattern": "^ZDB\\-\\w+\\-\\d+\\-\\d+$", "prefix": "zfin", "prefix_synonyms": [ "ZFIN" @@ -23207,6 +24840,7 @@ "http://identifiers.org/zfin/", "http://identifiers.org/zfin:", "http://n2t.net/zfin:", + "http://scicrunch.org/resolver/RRID:ZIRC_", "http://test.alliancegenome.org/gene/ZFIN:", "http://zfin.org/cgi-bin/webdriver?MIval=aa-markerview.apg&OID=", "https://bio2rdf.org/zfin:", @@ -23215,25 +24849,14 @@ "https://identifiers.org/zfin/", "https://identifiers.org/zfin:", "https://n2t.net/zfin:", + "https://scicrunch.org/resolver/RRID:ZIRC_", "https://test.alliancegenome.org/gene/ZFIN:", "https://zfin.org/", "https://zfin.org/cgi-bin/webdriver?MIval=aa-markerview.apg&OID=" ] }, { - "prefix": "ZFS", - "uri_prefix": "http://purl.obolibrary.org/obo/ZFS_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ZFS:", - "http://bioregistry.io/zfs:", - "http://www.ebi.ac.uk/ols/ontologies/zfs/terms?iri=http://purl.obolibrary.org/obo/ZFS_", - "https://bioregistry.io/ZFS:", - "https://bioregistry.io/zfs:", - "https://purl.obolibrary.org/obo/ZFS_", - "https://www.ebi.ac.uk/ols/ontologies/zfs/terms?iri=http://purl.obolibrary.org/obo/ZFS_" - ] - }, - { + "pattern": "^(ZINC)?\\d+$", "prefix": "zinc", "uri_prefix": "http://zinc15.docking.org/substances/", "uri_prefix_synonyms": [ @@ -23249,18 +24872,5 @@ "https://zinc.docking.org/substances/ZINC", "https://zinc15.docking.org/substances/" ] - }, - { - "prefix": "ZP", - "uri_prefix": "http://purl.obolibrary.org/obo/ZP_", - "uri_prefix_synonyms": [ - "http://bioregistry.io/ZP:", - "http://bioregistry.io/zp:", - "http://www.ebi.ac.uk/ols/ontologies/zp/terms?iri=http://purl.obolibrary.org/obo/ZP_", - "https://bioregistry.io/ZP:", - "https://bioregistry.io/zp:", - "https://purl.obolibrary.org/obo/ZP_", - "https://www.ebi.ac.uk/ols/ontologies/zp/terms?iri=http://purl.obolibrary.org/obo/ZP_" - ] } ] \ No newline at end of file