pbc box
pbc set {50 50 50}
pbc box -centersel center
https://www.youtube.com/watch?v=IeBpVabqzy0
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to wrap a trajectory: pbc wrap -centersel "protein" -center com -compound residue -all
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to write dcd: animate write dcd mohamed.dcd
topo readlammpsdata "path/to/file.lmp" topo readlammpsdata "path/to/file.data"
topo retypebonds
topo gussangles
topo guessdihedrals
pbc box
pbc set {50 50 50}
molinfo top set a 30.0
molinfo top set b 30.0
molinfo top set c 30.0
molinfo top set alpha 90.0
molinfo top set beta 90.0
molinfo top set gamma 90.0
topo writelammpsdata data.lammps full
ffmpeg -i file.mpg out.mp4