From a3b6eb3113266eb938d530522ce4ef1356699fdd Mon Sep 17 00:00:00 2001
From: Markus Reinert <markus-reinert@web.de>
Date: Tue, 21 Mar 2023 10:55:18 +0100
Subject: [PATCH] Correct the instructions and the run script

Trying out the instructions myself, I found two little bugs that are
corrected with this commit.  I also reduced the default number of CPU
cores from 16 to 4, so that the setup can be run locally on a personal
computer, without the need for a server or a larger desktop computer.
---
 README.md | 5 +++--
 run.sh    | 4 ++--
 2 files changed, 5 insertions(+), 4 deletions(-)

diff --git a/README.md b/README.md
index 403e0e1..a2c7fe2 100644
--- a/README.md
+++ b/README.md
@@ -42,8 +42,9 @@ Hans Burchard (submitted to JAMES, 2023)
 ### Preparation
 
 1. Download this repository and go to the downloaded directory.
-2. Create a sub-directory `bin` and copy the GETM executable to `bin/getm`.
-3. Look at the script [run.sh](run.sh), check the two settings at the
+2. Create the sub-directories `bin` and `store`.
+3. Copy the GETM executable to `bin/getm`.
+4. Look at the script [run.sh](run.sh), check the two settings at the
    beginning of the file, and correct them if needed:
     1. The path `GETMDIR` must point to the code-directory of GETM.
     2. The number of CPU cores in `nCPU` must be available on your computer.
diff --git a/run.sh b/run.sh
index 996f79f..fd9e609 100755
--- a/run.sh
+++ b/run.sh
@@ -11,13 +11,13 @@
 GETMDIR=$HOME/tools/getm/code/ 
 
 # Choose the number of CPU cores to use
-nCPU=16
+nCPU=4
 
 echo "Creating input files"
 python3 Make_fjord_setup_322.py
 
 echo "Creating namelist files"
-editscenario --schemadir $(GETMDIR)/schemas -e nml . fjord_322.xml
+editscenario --schemadir $GETMDIR/schemas -e nml . fjord_322.xml
 
 echo "Starting GETM ..."
 time mpirun -n $nCPU bin/getm