From 2e18b04f229f2907785b22b7696a305a9bb41c23 Mon Sep 17 00:00:00 2001 From: WardDeb Date: Sat, 14 Dec 2024 08:03:26 +0100 Subject: [PATCH] s pombe in kraken2 db --- contaminome.yml | 5 +++++ src/tools/prep_contaminome.py | 1 + 2 files changed, 6 insertions(+) diff --git a/contaminome.yml b/contaminome.yml index 87f5754..939bc92 100644 --- a/contaminome.yml +++ b/contaminome.yml @@ -39,6 +39,11 @@ eukaryotes: vulgarname: yeast accession: GCF_000146045.2 taxid: 4932 + Schizosaccharomyces pombe: + URL: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/945/GCF_000002945.2_ASM294v3/GCF_000002945.2_ASM294v3_genomic.fna.gz + vulgarname: fission-yeast + accession: GCF_000002945.2 + taxid: 4896 Danio rerio: URL: https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/035/GCF_000002035.6_GRCz11/GCF_000002035.6_GRCz11_genomic.fna.gz vulgarname: zebrafish diff --git a/src/tools/prep_contaminome.py b/src/tools/prep_contaminome.py index 591abf9..c4052d0 100644 --- a/src/tools/prep_contaminome.py +++ b/src/tools/prep_contaminome.py @@ -47,6 +47,7 @@ 'japanese-medaka': [8090, 13, 'species'], 'c-elegans': [6239, 13, 'species'], 'yeast': [4932, 13, 'species'], + 'fission-yeast': [4896, 13, 'species'], 'zebrafish': [7955, 13, 'species'], 'moss-piglet': [232323, 13, 'species'], 'ecoli': [562, 14, 'species'],