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Schedule for Genome Assembly and Annotation Hackathon 2023

Date: June 21-23, 2023

Time: 9 AM to 5 PM

Venue: ICIPE

Day 1 (June 21, 9:00AM - 5:00PM)

9:00AM - 9:30AM: Getting setup

  • Registration
  • set-up

9:30AM - 9:45AM: Welcome (Caleb/Dr Masiga/Dr Jandouwe)

  • What is a hackathon
    • How to make the best of the hackathon days
  • Expected outcomes
  • Introduction to Available Resources [Cynthia]

9:45 AM - 10:30 AM: Introducing Genome Assembly and Annotation (Kebaso, Parcelli, Sam, Violet)

10:30:00AM - 11:00 AM

  • Tea Break

11:00 - 11:45 PM: Demo [ Fredrick Kebaso)

11:00 - 11:45 PM: Forming Teams and developing a strategy [ Fredrick Kebaso)

  • Develop a roadmap and strategy
  • Define the scope
  • Gather required resources
  • Divide responsibilities

1:00PM - 2:00PM

  • LUNCH

2:00 PM - 4:00 PM: Break into teams and continue working (Team Leaders)

  • Refine your approach
  • Keep working

4:00PM - 4:15PM

  • BREAK

4:15PM - 5:00PM: Wrapping up the day (Team Leaders)

  • Daily summary by teams and wrap-up
  • Requirements review: what would improve the process the next day?

5:00PM

  • Break for the day

Day 2 (June 22, 9:00AM - 5:30PM)

9:00AM - 9:30AM: Welcome (Caleb)

  • Define the objectives for the day
  • Team leaders distribute tasks

9:30 - 10:30 AM: Break into teams and begin working

  • Annotate and hack away

10:30:00AM - 10:45AM: Tea Break

10:45 PM - 12:30 PM: Break into teams and continue working

12:30PM - 1:30PM

  • LUNCH

1:30PM - 2:00PM: Discussions and Interactions (Caleb)

  • How is it going so far?
  • Challenges?

2:00 PM - 4:00 PM: Break into teams and continue working (Team Leaders)

  • Prepare quick presentation
  • Start wrapping up

4:00PM - 4:15PM

  • BREAK

4:15PM - 5:00PM: Review (caleb)

  • Summary of progress by teams and wrap-up
  • Objectives met?
  • What could have been done better?
  • Vote of thanks

Day 3 (June 23, 9:00AM - 5:30PM)

9:00AM - 9:30AM: Welcome (Caleb)

  • Define the objectives for the day
  • Team leaders distribute tasks

9:30 - 10:30 AM: Break into teams and begin working

  • Annotate and hack away

10:30:00AM - 10:45AM: Tea Break

10:45 PM - 12:30 PM: Break into teams and continue working

12:30PM - 1:30PM

  • LUNCH

1:30PM - 2:00PM: Discussions and Interactions (Caleb)

  • How is it going so far?
  • Challenges?

2:00 PM - 4:00 PM: Break into teams and continue working (Team Leaders)

  • Prepare quick presentation
  • Start wrapping up

4:00PM - 4:15PM

  • BREAK

4:15PM - 5:00PM: Review (caleb)

  • Summary of progress by teams and wrap-up
  • Objectives met?
  • What could have been done better?
  • Vote of thanks