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Roadmap #1

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ckigenk opened this issue Dec 3, 2021 · 0 comments
Open

Roadmap #1

ckigenk opened this issue Dec 3, 2021 · 0 comments

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@ckigenk
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ckigenk commented Dec 3, 2021 •
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Aims

  1. Review existing microbiome workflows
  2. Identify the good workflows
  3. Extend the workflows where there are gaps
  4. Modify the workflows for insects and pathogen data

Review Criteria

  1. How easy are they to set up and use? Do they provide accessible documentation and tutorials?
  2. Are they fast and easily scalable based on available compute resources?
  3. Can they scale to the cloud?
  4. Can they be used on a variety of data, including insects and pathogen microbiome
  5. Are they implemented in the latest specifications and versions of the tools? For example, Whether the pipeline implements
  6. Nextflow DSL2 syntax and docker or singularity containers
  7. Are they well and regularly maintained? When were they updated last?

Flowchart

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Project

The progress of our project can be viewed here
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@ckigenk