CMakeLists.txt

cmake_minimum_required(VERSION 2.8.8)
project (sparsehc-dm)

if(NOT CMAKE_BUILD_TYPE)
    set(CMAKE_BUILD_TYPE Release)
endif(NOT CMAKE_BUILD_TYPE)

FIND_PACKAGE(PythonInterp)
FIND_PACKAGE(PythonLibs)
FIND_PACKAGE(Boost COMPONENTS python)
INCLUDE_DIRECTORIES(${Boost_INCLUDE_DIRS} ${PYTHON_INCLUDE_DIRS})
set(LIBS ${LIBS} ${Boost_LIBRARIES} ${PYTHON_LIBRARIES})

find_package(STXXL REQUIRED)
include_directories(${STXXL_INCLUDE_DIRS})
set(LIBS ${LIBS} ${STXXL_LIBRARIES})

find_package(OpenMP REQUIRED)
set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${OpenMP_C_FLAGS}")
set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")

include_directories(src)
file(GLOB SOURCES "src/*.cpp")
add_executable(cluster-sdm ${SOURCES})
target_link_libraries(cluster-sdm ${LIBS})
add_definitions(-std=c++11)

file(GLOB SHARED_SOURCES src/averagecluster.cpp src/cluster.cpp src/common.cpp src/completecluster.cpp src/dendrogram.cpp src/inmatrix.cpp src/matrix.cpp src/singlecluster.cpp)
add_custom_target(python_init COMMAND touch __init__.py)
ADD_LIBRARY(sparsehc_dm SHARED python/sparsehc-dm_python.cpp ${SHARED_SOURCES})
add_dependencies(sparsehc_dm python_init)
target_link_libraries(sparsehc_dm ${LIBS})
set_target_properties(sparsehc_dm PROPERTIES PREFIX "" SUFFIX ".so")

install(CODE "execute_process(COMMAND python ../python/setup.py install --prefix=${CMAKE_INSTALL_PREFIX} WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})")
install(TARGETS cluster-sdm RUNTIME DESTINATION bin)