From 378f1a62e6d75a91353b4e7fa46e9358940f320c Mon Sep 17 00:00:00 2001 From: "Miguel A. Ibarra-Arellano" Date: Tue, 19 Mar 2024 10:57:29 +0100 Subject: [PATCH] Add phenotyped file for testing downstream This file works to test SpatialLDA this should solve the issue #1130 --- data/imaging/downstream/phenotyped.csv | 644 +++++++++++++++++++++++++ 1 file changed, 644 insertions(+) create mode 100644 data/imaging/downstream/phenotyped.csv diff --git a/data/imaging/downstream/phenotyped.csv b/data/imaging/downstream/phenotyped.csv new file mode 100644 index 000000000..0ed3c55b5 --- /dev/null +++ b/data/imaging/downstream/phenotyped.csv @@ -0,0 +1,644 @@ +CellID,X_centroid,Y_centroid,Area,MajorAxisLength,MinorAxisLength,Eccentricity,Solidity,Extent,Orientation,imageid,sampleid,regionid,phenotype,precise_phenotype,CK_TRITC,FoxP3_Cy5,CD68_TRITC,CD4_Cy5,CD31_Cy5,ASMA_TRITC,CD14_Cy5,CD16_Cy5,CD11b_Cy5,Vimentin_Cy5,CD14/CD16,broad_phenotype,CD4macro,image_id 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