diff --git a/.github/workflows/openfl-test.yml b/.github/workflows/openfl-test.yml index 86ce00a4d..4c48b54b7 100644 --- a/.github/workflows/openfl-test.yml +++ b/.github/workflows/openfl-test.yml @@ -90,15 +90,17 @@ jobs: git clone --depth=1 https://github.com/securefederatedai/openfl.git cd openfl git fetch --tags - echo "Checkout the latest OpenFL tag" - latestTag=$(git describe --tags "$(git rev-list --tags --max-count=1)") - git checkout $latestTag - sed -i -e 's/protobuf==3.19.6/protobuf/g' setup.py ## this should NOT be there + # echo "Checkout the latest OpenFL tag" + # latestTag=$(git describe --tags "$(git rev-list --tags --max-count=1)") + # git checkout $latestTag + # sed -i -e 's/protobuf==3.19.6/protobuf/g' setup.py ## this should NOT be there pip install -e . cd .. echo "Copying files to appropriate directories and updated headers" - head -n 1 testing/data/train_3d_rad_segmentation.csv > /home/runner/work/GaNDLF/GaNDLF/openfl/valid.csv - tail -n +9 testing/data/train_3d_rad_segmentation.csv >> /home/runner/work/GaNDLF/GaNDLF/openfl/valid.csv - head -n 8 testing/data/train_3d_rad_segmentation.csv > /home/runner/work/GaNDLF/GaNDLF/openfl/train.csv + head -n 1 testing/data/train_2d_rad_segmentation.csv > /home/runner/work/GaNDLF/GaNDLF/openfl/valid.csv + tail -n +9 testing/data/train_2d_rad_segmentation.csv >> /home/runner/work/GaNDLF/GaNDLF/openfl/valid.csv + head -n 8 testing/data/train_2d_rad_segmentation.csv > /home/runner/work/GaNDLF/GaNDLF/openfl/train.csv + sed -i 's/# n_channels: 3/num_channels: 3/g' testing/config_segmentation.yaml + config_to_use=$(pwd)/testing/config_segmentation.yaml cd openfl - python -m tests.github.test_gandlf --template gandlf_seg_test --fed_workspace aggregator --col1 one --col2 two --rounds-to-train 1 + python -m tests.github.test_gandlf --template gandlf_seg_test --fed_workspace aggregator --col1 one --col2 two --rounds-to-train 1 --gandlf_config $config_to_use