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align checkpoints with BGZF block boundaries #16

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mlin opened this issue Feb 22, 2019 · 0 comments
Open

align checkpoints with BGZF block boundaries #16

mlin opened this issue Feb 22, 2019 · 0 comments
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mlin commented Feb 22, 2019

This would facilitate zero-transcoding htsget on spvcf.gz. Would need to use htslib BGZF primitives directly inside spvcf instead of piping into bgzip.

Fallback idea: add a flag to the decoder directing it to ignore any input rows preceding a checkpoint. Still, for the zero-transcoding case we need a way to guarantee we include the previous checkpoint.

@mlin mlin closed this as completed Feb 27, 2019
@mlin mlin reopened this Feb 27, 2019
@mlin mlin added the bug Something isn't working label Nov 10, 2020
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