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To help with approximate reconstruction of genotype likelihoods from binned DP (when downstream tools strictly require them to be present even in non-variant cells):
during encoding, calculate regression coefficients for PL[1] and PL[2] on binned DP
include them in the output file, perhaps in the header (but that'd require a second pass)
optionally use them to fill out approximate PL vectors during decoding
The text was updated successfully, but these errors were encountered:
To help with approximate reconstruction of genotype likelihoods from binned DP (when downstream tools strictly require them to be present even in non-variant cells):
The text was updated successfully, but these errors were encountered: