v0.4.2

Improve stdin/stdout streaming performance

v0.4.1

Fix - as input filename

squeeze subcommand

The spvcf squeeze subcommand applies the pVCF-to-pVCF QC squeezing transformation independently of sparse quote-encoding. If the sparse encoding is also desired, it's still more efficient to use spvcf encode --squeeze rather than spvcf squeeze | spvcf encode.

v0.3.1

Update README.md

tabix slicing PoC

Tabix slicing functionality (seems to work but hasn't been tested at scale). Reorganize command-line interface to use subcommands spvcf {encode,decode,tabix}

v0.2.3: speed up decoder with homebrew ostringstream

It is absurd that in 2018 i have to write this myself to get good performance.

v0.2.2

minor strlen tweak

v0.2.1: speed up encoder (#5)

A bunch of gnarly tricks to speed up the encoder: avoiding stringstream, reducing copying & allocation, using lookup table, etc.

v0.2.0: Smart squeezing

Revise squeezing logic to truncate cells to GT:DP if there's no evidence for any alternate allele based on AD/VR

v0.1.2

encoder speed optimization