From e4f34945737f557a793cbc0776cdfeea645bbd81 Mon Sep 17 00:00:00 2001
From: "github-actions[bot]"
<41898282+github-actions[bot]@users.noreply.github.com>
Date: Fri, 20 Dec 2024 01:46:00 +0000
Subject: [PATCH 1/2] ci(release): set version to 3.9.0, update plugins from
DFN files, update changelog
---
.docs/md/version_changes.md | 30 ++++++++++++++++++++++++++++++
CITATION.cff | 4 ++--
README.md | 4 ++--
docs/PyPI_release.md | 2 +-
flopy/version.py | 4 ++--
version.txt | 2 +-
6 files changed, 38 insertions(+), 8 deletions(-)
diff --git a/.docs/md/version_changes.md b/.docs/md/version_changes.md
index 42fe779c7d..d4213be081 100644
--- a/.docs/md/version_changes.md
+++ b/.docs/md/version_changes.md
@@ -1,4 +1,34 @@
# Changelog
+### Version 3.9.0
+
+#### New features
+
+* [feat(plot_centers)](https://github.com/modflowpy/flopy/commit/c6a41abb496039b65fbe52fd6c3f2df011e492be): Add plot_centers support to PlotMapView and PlotCrossSection (#2318). Committed by Joshua Larsen on 2024-10-07.
+* [feat(get-modflow)](https://github.com/modflowpy/flopy/commit/d800ce5638e7a0983985881f2fa5d37207e3560b): Support windows extended build (#2356). Committed by mjreno on 2024-11-06.
+* [feat(binaryfile)](https://github.com/modflowpy/flopy/commit/4eac63176f1328a22a55e1cf131db55b8ca929a8): Add head/budget file reversal script (#2383). Committed by wpbonelli on 2024-11-27.
+
+#### Bug fixes
+
+* [fix(ZoneFile6.load)](https://github.com/modflowpy/flopy/commit/99d57e6fd0d0d41c364f9c76f7800ec3be0d179a): Add split statement to input read (#2330). Committed by Joshua Larsen on 2024-10-09.
+* [fix(resample_to_grid)](https://github.com/modflowpy/flopy/commit/15f1b94a45487e42aa36afdd2abb2b111c2197a6): Fix unintended extrapolation (#2331). Committed by Joshua Larsen on 2024-10-09.
+* [fix(utils)](https://github.com/modflowpy/flopy/commit/558f4a8c9d17241e21e7d41c3a75a9a6380a9fb1): Exclude ncf from mf6 output utils (#2336). Committed by mjreno on 2024-10-16.
+* [fix(masked_4D_arrays)](https://github.com/modflowpy/flopy/commit/332a310ef0b43130fd2f37cf7cd4abe954484524): Allow re-use of preceding spd data if empty (#2314). Committed by martclanor on 2024-10-20.
+* [fix(gridintersect)](https://github.com/modflowpy/flopy/commit/34043ab58eb254feee0c2f47cb63e057905b49d7): Fix multiple issues (#2343). Committed by Davíd Brakenhoff on 2024-10-25.
+
+#### Refactoring
+
+* [refactor(PackageContainer)](https://github.com/modflowpy/flopy/commit/f378f84a5677b99191ce178bb1c5b67ac1d1bd66): Compose not inherit, deprecate methods (#2324). Committed by Marnix on 2024-10-14.
+* [refactor(Modpath7.create_mp7)](https://github.com/modflowpy/flopy/commit/3a2c4946a047e20e35341d7e4266f8dae3ac5316): Expose porosity parameter of Modpath7Bas (#2340). Committed by martclanor on 2024-10-20.
+* [refactor(gridintersect)](https://github.com/modflowpy/flopy/commit/f8810c20097004a940e96ee0f2bc0229366a3899): Clean up gridintersect (#2346). Committed by Davíd Brakenhoff on 2024-10-24.
+* [refactor(Mf6Splitter)](https://github.com/modflowpy/flopy/commit/acc5a5b6580bdd6e93a24970db7d0b62d54e2485): Added split_multi_model method (#2352). Committed by Joshua Larsen on 2024-11-06.
+* [refactor(mf6)](https://github.com/modflowpy/flopy/commit/4e0906426ef70235a7546c31d263904fa3249a9d): Deprecate mf6 checks (#2357). Committed by wpbonelli on 2024-11-06.
+* [refactor](https://github.com/modflowpy/flopy/commit/a5545c6fc23c2ea1476f5b5650ce294ae9d2509f): Apply suggestions from pyupgrade (#2361). Committed by Mike Taves on 2024-11-11.
+* [refactor](https://github.com/modflowpy/flopy/commit/bb9824e8aaea04a43d911724445cf0610301d236): Fix long lines to resolve check E501 (#2368). Committed by Mike Taves on 2024-11-14.
+* [refactor](https://github.com/modflowpy/flopy/commit/373b82d3b864fe54bf5675e2a1aabbe4b6eee58e): Resolve ruff check F821 for undefined names (#2374). Committed by Mike Taves on 2024-11-18.
+* [refactor](https://github.com/modflowpy/flopy/commit/22b5992ccd0e8280ee831611e8823bdb0d22ae3b): Apply fixes for flake8 comprehensions (C4) (#2376). Committed by Mike Taves on 2024-11-18.
+* [refactor(deprecations)](https://github.com/modflowpy/flopy/commit/1993af155f9db97f5e4fb1a0090926e4cb65cf19): Deprecate flopy.mf6.utils.reference module (#2375). Committed by wpbonelli on 2024-11-19.
+* [refactor](https://github.com/modflowpy/flopy/commit/4c1bf6cb486f8bd5bd9d25c5c7cf159fc65ecd4b): Apply Ruff-specific rule checks (#2377). Committed by Mike Taves on 2024-11-22.
+
### Version 3.8.2
#### Bug fixes
diff --git a/CITATION.cff b/CITATION.cff
index 804c356ae8..4509967430 100644
--- a/CITATION.cff
+++ b/CITATION.cff
@@ -3,8 +3,8 @@ message: If you use this software, please cite both the article from preferred-c
references, and the software itself.
type: software
title: FloPy
-version: 3.9.0.dev2
-date-released: '2024-10-03'
+version: 3.9.0
+date-released: '2024-12-20'
doi: 10.5066/F7BK19FH
abstract: A Python package to create, run, and post-process MODFLOW-based models.
repository-artifact: https://pypi.org/project/flopy
diff --git a/README.md b/README.md
index e22f58134a..bfe9bfbe5e 100644
--- a/README.md
+++ b/README.md
@@ -1,7 +1,7 @@
-### Version 3.9.0.dev2
+### Version 3.9.0
[![flopy continuous integration](https://github.com/modflowpy/flopy/actions/workflows/commit.yml/badge.svg?branch=develop)](https://github.com/modflowpy/flopy/actions/workflows/commit.yml)
[![Read the Docs](https://github.com/modflowpy/flopy/actions/workflows/rtd.yml/badge.svg?branch=develop)](https://github.com/modflowpy/flopy/actions/workflows/rtd.yml)
@@ -150,7 +150,7 @@ How to Cite
##### ***Software/Code citation for FloPy:***
-[Bakker, Mark, Post, Vincent, Hughes, J. D., Langevin, C. D., White, J. T., Leaf, A. T., Paulinski, S. R., Bellino, J. C., Morway, E. D., Toews, M. W., Larsen, J. D., Fienen, M. N., Starn, J. J., Brakenhoff, D. A., and Bonelli, W. P., 2024, FloPy v3.9.0.dev2: U.S. Geological Survey Software Release, 03 October 2024, https://doi.org/10.5066/F7BK19FH](https://doi.org/10.5066/F7BK19FH)
+[Bakker, Mark, Post, Vincent, Hughes, J. D., Langevin, C. D., White, J. T., Leaf, A. T., Paulinski, S. R., Bellino, J. C., Morway, E. D., Toews, M. W., Larsen, J. D., Fienen, M. N., Starn, J. J., Brakenhoff, D. A., and Bonelli, W. P., 2024, FloPy v3.9.0: U.S. Geological Survey Software Release, 20 December 2024, https://doi.org/10.5066/F7BK19FH](https://doi.org/10.5066/F7BK19FH)
Additional FloPy Related Publications
diff --git a/docs/PyPI_release.md b/docs/PyPI_release.md
index 7b451038a2..5a63b8b591 100644
--- a/docs/PyPI_release.md
+++ b/docs/PyPI_release.md
@@ -30,4 +30,4 @@ How to Cite
*Software/Code citation for FloPy:*
-[Bakker, Mark, Post, Vincent, Hughes, J. D., Langevin, C. D., White, J. T., Leaf, A. T., Paulinski, S. R., Bellino, J. C., Morway, E. D., Toews, M. W., Larsen, J. D., Fienen, M. N., Starn, J. J., Brakenhoff, D. A., and Bonelli, W. P., 2024, FloPy v3.9.0.dev2: U.S. Geological Survey Software Release, 03 October 2024, https://doi.org/10.5066/F7BK19FH](https://doi.org/10.5066/F7BK19FH)
+[Bakker, Mark, Post, Vincent, Hughes, J. D., Langevin, C. D., White, J. T., Leaf, A. T., Paulinski, S. R., Bellino, J. C., Morway, E. D., Toews, M. W., Larsen, J. D., Fienen, M. N., Starn, J. J., Brakenhoff, D. A., and Bonelli, W. P., 2024, FloPy v3.9.0: U.S. Geological Survey Software Release, 20 December 2024, https://doi.org/10.5066/F7BK19FH](https://doi.org/10.5066/F7BK19FH)
diff --git a/flopy/version.py b/flopy/version.py
index ebd7d3649e..8763a751ec 100644
--- a/flopy/version.py
+++ b/flopy/version.py
@@ -1,4 +1,4 @@
# flopy version file automatically created using
-# update_version.py on October 03, 2024 11:54:30
+# update_version.py on December 20, 2024 01:37:30
-__version__ = "3.9.0.dev2"
+__version__ = "3.9.0"
diff --git a/version.txt b/version.txt
index b5bf3ea449..b72ad011fa 100644
--- a/version.txt
+++ b/version.txt
@@ -1 +1 @@
-3.9.0.dev2
\ No newline at end of file
+3.9.0
\ No newline at end of file
From c4cdc35d16c0670e5dcc699dba25108375982593 Mon Sep 17 00:00:00 2001
From: wpbonelli
Date: Thu, 19 Dec 2024 21:40:54 -0500
Subject: [PATCH 2/2] ci(release): update version to 3.10.0.dev0
---
CITATION.cff | 4 ++--
README.md | 4 ++--
docs/PyPI_release.md | 2 +-
flopy/version.py | 4 ++--
version.txt | 2 +-
5 files changed, 8 insertions(+), 8 deletions(-)
diff --git a/CITATION.cff b/CITATION.cff
index 4509967430..2cce139d73 100644
--- a/CITATION.cff
+++ b/CITATION.cff
@@ -3,8 +3,8 @@ message: If you use this software, please cite both the article from preferred-c
references, and the software itself.
type: software
title: FloPy
-version: 3.9.0
-date-released: '2024-12-20'
+version: 3.10.0.dev0
+date-released: '2024-12-19'
doi: 10.5066/F7BK19FH
abstract: A Python package to create, run, and post-process MODFLOW-based models.
repository-artifact: https://pypi.org/project/flopy
diff --git a/README.md b/README.md
index bfe9bfbe5e..8f8996e22e 100644
--- a/README.md
+++ b/README.md
@@ -1,7 +1,7 @@
-### Version 3.9.0
+### Version 3.10.0.dev0
[![flopy continuous integration](https://github.com/modflowpy/flopy/actions/workflows/commit.yml/badge.svg?branch=develop)](https://github.com/modflowpy/flopy/actions/workflows/commit.yml)
[![Read the Docs](https://github.com/modflowpy/flopy/actions/workflows/rtd.yml/badge.svg?branch=develop)](https://github.com/modflowpy/flopy/actions/workflows/rtd.yml)
@@ -150,7 +150,7 @@ How to Cite
##### ***Software/Code citation for FloPy:***
-[Bakker, Mark, Post, Vincent, Hughes, J. D., Langevin, C. D., White, J. T., Leaf, A. T., Paulinski, S. R., Bellino, J. C., Morway, E. D., Toews, M. W., Larsen, J. D., Fienen, M. N., Starn, J. J., Brakenhoff, D. A., and Bonelli, W. P., 2024, FloPy v3.9.0: U.S. Geological Survey Software Release, 20 December 2024, https://doi.org/10.5066/F7BK19FH](https://doi.org/10.5066/F7BK19FH)
+[Bakker, Mark, Post, Vincent, Hughes, J. D., Langevin, C. D., White, J. T., Leaf, A. T., Paulinski, S. R., Bellino, J. C., Morway, E. D., Toews, M. W., Larsen, J. D., Fienen, M. N., Starn, J. J., Brakenhoff, D. A., and Bonelli, W. P., 2024, FloPy v3.10.0.dev0: U.S. Geological Survey Software Release, 19 December 2024, https://doi.org/10.5066/F7BK19FH](https://doi.org/10.5066/F7BK19FH)
Additional FloPy Related Publications
diff --git a/docs/PyPI_release.md b/docs/PyPI_release.md
index 5a63b8b591..66c60d367f 100644
--- a/docs/PyPI_release.md
+++ b/docs/PyPI_release.md
@@ -30,4 +30,4 @@ How to Cite
*Software/Code citation for FloPy:*
-[Bakker, Mark, Post, Vincent, Hughes, J. D., Langevin, C. D., White, J. T., Leaf, A. T., Paulinski, S. R., Bellino, J. C., Morway, E. D., Toews, M. W., Larsen, J. D., Fienen, M. N., Starn, J. J., Brakenhoff, D. A., and Bonelli, W. P., 2024, FloPy v3.9.0: U.S. Geological Survey Software Release, 20 December 2024, https://doi.org/10.5066/F7BK19FH](https://doi.org/10.5066/F7BK19FH)
+[Bakker, Mark, Post, Vincent, Hughes, J. D., Langevin, C. D., White, J. T., Leaf, A. T., Paulinski, S. R., Bellino, J. C., Morway, E. D., Toews, M. W., Larsen, J. D., Fienen, M. N., Starn, J. J., Brakenhoff, D. A., and Bonelli, W. P., 2024, FloPy v3.10.0.dev0: U.S. Geological Survey Software Release, 19 December 2024, https://doi.org/10.5066/F7BK19FH](https://doi.org/10.5066/F7BK19FH)
diff --git a/flopy/version.py b/flopy/version.py
index 8763a751ec..e308abc044 100644
--- a/flopy/version.py
+++ b/flopy/version.py
@@ -1,4 +1,4 @@
# flopy version file automatically created using
-# update_version.py on December 20, 2024 01:37:30
+# update_version.py on December 19, 2024 21:40:33
-__version__ = "3.9.0"
+__version__ = "3.10.0.dev0"
diff --git a/version.txt b/version.txt
index b72ad011fa..e4f5f685f2 100644
--- a/version.txt
+++ b/version.txt
@@ -1 +1 @@
-3.9.0
\ No newline at end of file
+3.10.0.dev0
\ No newline at end of file