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Notes about Mondo release process

Nicole Vasilevsky edited this page Aug 12, 2020 · 4 revisions

diseases2owl: https://github.com/cmungall/diseases2owl/tree/master/sources

OMIM:

  • build OMIM - Nico knows how to do this step
  • run slurp script:

cat mirror/omim.obo | ./add-to-tbd.pl | obo-grep.pl --neg -r ALREADY -


  • put Phenotypic Series (PS) in first, so we know what the parents are of the children. Sometimes the PS will exist in Mondo, but it hasn't been xref'd. Sometimes it's better to manually look for these.

  • either make new classes for PS or xref to existing classes

  • when look at the output, first filter to ensure there are no missing is_a links

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