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Support for Sciex data #107

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KarinSchork opened this issue Oct 25, 2024 · 1 comment
Open

Support for Sciex data #107

KarinSchork opened this issue Oct 25, 2024 · 1 comment
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discussion Something to discuss enhancement New feature or request

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@KarinSchork
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This was asked at the HUPO2024. I think it should be quite easy to convert the files into mzml and calculate most of the values.

@KarinSchork KarinSchork added enhancement New feature or request discussion Something to discuss labels Oct 25, 2024
@Luxxii
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Luxxii commented Oct 25, 2024

Should be doable. there already is documentation how to convert with ProteoWizard: https://community.sciex.com/2021/08/05/using-proteowizard-for-converting-files-for-use-in-proteinpilot-software/

We could just use this container: https://github.com/ProteoWizard/container

and then would need to add the corresponding processes into the this nextflow script: https://github.com/mpc-bioinformatics/McQuaC/blob/main/src/io/raw_file_conversion.nf

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