fastq_fast5_bulk.md

FASTQ (Sequence Data) and FAST5 (Raw Signal Data)

FASTQ and FAST5 files for the dataset have been split by centre and sample. All runs MinION unless noted.

Centre	Run #	SampleType	Kit	Pore	Links
Bham	Run1	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5
Bham	Run2	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5 (GridION)
Bham	Run3	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5 (GridION)
Bham	Run4	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5 (GridION)
Bham	Run5	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5 (GridION)
JHU	Run1	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5
JHU	Run2	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5
JHU	Run3	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5
JHU	Run4	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5
JHU	Run5	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5
Notts	Run1	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5
Notts	Run2	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5
Notts	Run3	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5
Notts	Run4	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5
Notts	Run5	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5
OICR	Run1	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5
OICR	Run2	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5
OICR	Run3	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5
OICR	Run4	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5
OICR	Run5	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5
UBC	Run1	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5
UBC	Run2	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5
UBC	Run3	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5
UBC	Run4	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5
UBC	Run5	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5
UCSC	Run1	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5
UCSC	Run2	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5
UCSC	Run3	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5
UCSC	Run4	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5
UCSC	Run5	RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5
Bham	Run1	1D cDNA	SQK-PCS108	R9.4	FASTQ fail, FASTQ pass , FAST5
Bham	Run2	1D cDNA	SQK-PCS108	R9.4	FASTQ fail, FASTQ pass , FAST5
JHU	Run1	1D cDNA	SQK-PCS108	R9.4	FASTQ fail, FASTQ pass , FAST5
JHU	Run2	1D cDNA	SQK-PCS108	R9.4	FASTQ fail, FASTQ pass , FAST5
Notts	Run1	1D cDNA	SQK-PCS108	R9.4	FASTQ fail, FASTQ pass , FAST5
Notts	Run2	1D cDNA	SQK-PCS108	R9.4	FASTQ fail, FASTQ pass , FAST5
OICR	Run1	1D cDNA	SQK-PCS108	R9.4	FASTQ fail, FASTQ pass , FAST5
OICR	Run2	1D cDNA	SQK-PCS108	R9.4	FASTQ fail, FASTQ pass , FAST5
UBC	Run1	1D cDNA	SQK-PCS108	R9.4	FASTQ fail, FASTQ pass , FAST5
UBC	Run2	1D cDNA	SQK-PCS108	R9.4	FASTQ fail, FASTQ pass , FAST5
UCSC	Run1	1D cDNA	SQK-PCS108	R9.4	FASTQ fail, FASTQ pass , FAST5
UCSC	Run2	1D cDNA	SQK-PCS108	R9.4	FASTQ fail, FASTQ pass , FAST5
Bham	Run1	1D2 cDNA	SQK-LSK308	R9.4	1D FASTQ , FAST5
Bham	Run2	1D2 cDNA	SQK-LSK308	R9.4	1D FASTQ , FAST5
JHU	Run1	1D2 cDNA	SQK-LSK308	R9.4	1D FASTQ , FAST5
JHU	Run2	1D2 cDNA	SQK-LSK308	R9.4	1D FASTQ , FAST5
Notts	Run1	1D2 cDNA	SQK-LSK308	R9.4	1D FASTQ , FAST5
Notts	Run2	1D2 cDNA	SQK-LSK308	R9.4	1D FASTQ , FAST5
OICR	Run1	1D2 cDNA	SQK-LSK308	R9.4	1D FASTQ , FAST5
OICR	Run2	1D2 cDNA	SQK-LSK308	R9.4	1D FASTQ , FAST5
UBC	Run1	1D2 cDNA	SQK-LSK308	R9.4	1D FASTQ , FAST5
UBC	Run2	1D2 cDNA	SQK-LSK308	R9.4	1D FASTQ , FAST5
UCSC	Run1	1D2 cDNA	SQK-LSK308	R9.4	1D FASTQ , FAST5
UCSC	Run2	1D2 cDNA	SQK-LSK308	R9.4	1D FASTQ , FAST5
UCSC	Run1	IVT RNA	SQK-RNA001	R9.4	FASTQ fail, FASTQ pass, FAST5

Bulk FAST5 (Continuous Data)

The Notts centre acquired continuous data (Bulk FAST5 File) for each of their consortium runs. These files could be visualized using bulkvis.

Centre	Run #	SampleType	Kit	Pore	Links
Notts	Run1	RNA	SQK-RNA001	R9.4	Bulk FAST5
Notts	Run2	RNA	SQK-RNA001	R9.4	Bulk FAST5, Bulk Fast5 rs1
Notts	Run3	RNA	SQK-RNA001	R9.4	Bulk FAST5
Notts	Run4	RNA	SQK-RNA001	R9.4	Bulk FAST5
Notts	Run5	RNA	SQK-RNA001	R9.4	Bulk FAST5
Notts	Run1	1D cDNA	SQK-PCS108	R9.4	Bulk FAST5
Notts	Run2	1D cDNA	SQK-PCS108	R9.4	Bulk FAST5
Notts	Run1	1D2 cDNA	SQK-LSK308	R9.4	Bulk FAST5
Notts	Run2	1D2 cDNA	SQK-LSK308	R9.4	Bulk FAST5