.gitlab-ci.yml

image: $IMAGE

stages:
    - test
    - build
    - deploy

# Install a particular Python and set PYTHON envvar for Makefile
.install-pyenv: &install-pyenv |
    git clone https://github.com/pyenv/pyenv.git ~/.pyenv
    export PYENV_ROOT="$HOME/.pyenv"
    export PATH="$PYENV_ROOT/bin:$PATH"
    PYTHON_CONFIGURE_OPTS="--enable-shared" pyenv install ${PYENV_VERSION}
    export PYTHON=$(PYENV_VERSION=$PYENV_VERSION pyenv which python)

.preparetest: &preparetest
    stage: test
    before_script:
        - export DEBIAN_FRONTEND=noninteractive
        - apt-get update -qq
        - apt-get install -y -qq 
          gcc make cmake curl wget git sqlite3 libsqlite3-dev
          zlib1g-dev libbz2-dev libreadline-dev libssl-dev libffi-dev
        - *install-pyenv


.minimal-python: &minimal-python
    before_script:
        - export DEBIAN_FRONTEND=noninteractive
        - apt-get update -qq && apt-get install -y -qq
          python3-all-dev python3-venv


# medaka test suite on various Pythons
.pytest: &pytest
    <<: *preparetest
    script:
        - make flake8 test


test-3.7.9:
    variables:
        PYENV_VERSION: 3.7.9
    <<: *pytest

test-3.8.7:
    variables:
        PYENV_VERSION: 3.8.7
    <<: *pytest

test-3.9.16:
    variables:
        PYENV_VERSION: 3.9.16
    <<: *pytest

test-3.10.9:
    variables:
        PYENV_VERSION: 3.10.9
    <<: *pytest


###
# Source distribution
#

build:sdist:
    stage: build
    <<: *minimal-python
    script:
        - make sdist
    artifacts:
        paths:
            - dist/*.tar.gz

###
# Deploy stages
#

# Send all tags to PyPI
deploy:pypi:
    stage: deploy
    <<: *minimal-python
    script:
        - make pypi_build/bin/activate
        - source pypi_build/bin/activate
        - twine upload dist/*.tar.gz
    only:
        - tags

# Send all tags matching vX.Y.Z to github (code and release)
push-github:
    stage: deploy
    before_script:
        - apt-get update -qq && apt-get install -y -qq
          git python3-all-dev python3-venv git-lfs
        - mkdir ~/.ssh/
        - cp $RESEARCH_BOT_GH_KEY ~/.ssh/id_rsa && chmod 600 ~/.ssh/id_rsa
        - echo -e "Host github.com\n\tStrictHostKeyChecking no\n\tHostname ssh.github.com\n\tPort 443\n\n" > ~/.ssh/config
        - git config --global user.email "research.git@nanoporetech.com"
        - git config --global user.name "ontresearch"
    script:
        # Push master and tag to github
        - git remote add ont ${CI_REPOSITORY_URL} || true
        - git remote add github git@github.com:nanoporetech/${CI_PROJECT_NAME}.git || true
        - git fetch ont dev --tags
        - git checkout ${CI_COMMIT_TAG}
        - git branch -D master || echo "No master branch to delete"
        - git checkout -b master
        - git push -f github master
        - git push github ${CI_COMMIT_TAG}
        # Make a github release page
        - python3 -m venv release_env --prompt "(release) "
        - source release_env/bin/activate
        - pip install pip --upgrade
        - pip install git+https://github.com/epi2me-labs/github_release.git
        - github_release ${CI_PROJECT_NAME} ${CI_COMMIT_TAG} CHANGELOG.md ${RESEARCH_BOT_GH_TOKEN} --artifacts dist/*.tar.gz
    only:
        - /^v[[:digit:]]+\.[[:digit:]]+\.[[:digit:]]+$/
    except:
        - branches