cannot find VBZ_LINK_LIBS

[Seongmin-Jang-1165]

hello

i downloaded vbz_compression through source code and run setup.py, several errors is occured.

the first error is VBZ_INCLUDE_PATHS , and i assigned this to ./vbz/
export VBZ_INCLUDE_PATHS=/home/rnagenomics/sm/Nanopore/20240923_Histone_Direct_RNA_seq/analysis/deeplexicon/vbz_compression-1.0.2/vbz

it works so i re-run the setup.py

but there are second error that

KeyError: 'VBZ_LINK_LIBS'

I tried to resolve the error but ultimately couldn't find a solution. Could you please provide a solution for this?

[minknowbot]

Hi @Seongmin-Jang-1165 ,

Can you let me know what you are trying to achieve?

We have binary builds I would advise you look at, if you haven't?

Thanks,

• George

[Seongmin-Jang-1165]

@minknowbot hi George sorry for late reply

we want to use Deeplexicon(https://github.com/Psy-Fer/deeplexicon) for demultiplexing raw fast5 data. but error occurs that the tool cannot read my raw data.

in my opinion, my data and the tool's version is not compatible, so maybe VBZ compression step is needed. so tried to run VBZ compression.

[0x55555555]

Ok,

I would suggest you download a prebuilt binary first, and try that.

What platform are you running on?

Thanks,

• George