munin.config

// Profile config names for nf-core/configs

params {
    // Specific nf-core/configs params
    config_profile_contact     = 'Maxime Garcia (@maxulysse)'
    config_profile_description = 'MUNIN profile provided by nf-core/configs'
    config_profile_url         = 'https://ki.se/forskning/barntumorbanken'

    // Local AWS iGenomes reference file paths on munin
    igenomes_base              = '/data1/references/igenomes/'

    // General cpus/memory/time requirements
    max_cpus                   = 46
    max_memory                 = 752.GB
    max_time                   = 72.h
}

process {
    resourceLimits = [
        memory: 752.GB,
        cpus: 46,
        time: 72.h
    ]
    executor = 'local'
    maxForks = 46

    // Limit cpus for Mutect2
    withName: 'Mutect2|Mutect2Single|PileupSummariesForMutect2' {
        time     = { 48.h * task.attempt }
        maxForks = 12
    }
}

singularity {
    cacheDir = '/data1/containers/'
    enabled  = true
}

// To use docker, use nextflow run -profile munin,docker
profiles {
    docker {
        docker {
            enabled      = false
            mountFlags   = 'z'
            fixOwnership = true
        }
    }
}