diff --git a/CHANGELOG.md b/CHANGELOG.md index b3ad5d8..17c4275 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -42,9 +42,13 @@ Changed default values of parameters: | `cutoff_tax2filter` | 2 | 0 | | `cutoff_tax2keep` | 0.5 | 0.0 | +### `Changed` + +- [PR #42](https://github.com/nf-core/detaxizer/pull/42) - Template update for nf-core/tools 3.0.2, for details read [this blog post](https://nf-co.re/blog/2024/tools-3_0_0#important-template-updates) + ### `Fixed` -- [PR #33](https://github.com/nf-core/detaxizer/pull/33) - Addition of quotation marks in `parse_kraken2report.nf` prevents failure of the pipeline when using a taxon with space (e.g. Homo sapiens) with the `tax2filter` parameter. +- [PR #33](https://github.com/nf-core/detaxizer/pull/33) - Addition of quotation marks in `parse_kraken2report.nf` prevents failure of the pipeline when using a taxon with space (e.g. Homo sapiens) with the `tax2filter` parameter - [PR #34](https://github.com/nf-core/detaxizer/pull/34) - Made validation via blastn optional by default - [PR #34](https://github.com/nf-core/detaxizer/pull/34) - Changed parameter `fasta` to `fasta_blastn` @@ -55,6 +59,7 @@ Updated and added dependencies | ------- | ---------------- | --------------- | | bbmap | - | 39.06 | | blastn | 2.14.1 | 2.15.0 | +| multiQC | 1.21 | 1.25.1 | | kraken2 | 2.1.2 | 2.1.3 | | seqkit | 2.8.0 | 2.8.2 | @@ -64,6 +69,9 @@ Updated and added dependencies | ------------- | ------------------- | ------------------------------------------------------------------------------------ | | `fasta` | `fasta_blastn` | Introduction of fasta_bbduk; necessary to further distinguish the two parameters | | `skip_blastn` | `validation_blastn` | blastn is now to be enabled on purpose; too resource intensive for a default setting | +| `max_cpus` | - | New behavior of [nextflow](https://www.nextflow.io/docs/latest/reference/process.html#resourcelimits), `resourceLimits` can now be set via a config | +| `max_memory` | - | New behavior of [nextflow](https://www.nextflow.io/docs/latest/reference/process.html#resourcelimits), `resourceLimits` can now be set via a config | +| `max_time` | - | New behavior of [nextflow](https://www.nextflow.io/docs/latest/reference/process.html#resourcelimits), `resourceLimits` can now be set via a config | ## v1.0.0 - Kobbfarbad - [2024-03-26]