From 7f4eb68598e2faad2d4dd1249681a5998dcec557 Mon Sep 17 00:00:00 2001
From: Edmund Miller <git@edmundmiller.dev>
Date: Wed, 20 Nov 2024 13:07:43 -0600
Subject: [PATCH] ci(lint): Get the module name

https://github.com/nf-core/tools/pull/3141
---
 .github/workflows/lint.yml | 28 ++++++++++++++++++++++------
 1 file changed, 22 insertions(+), 6 deletions(-)

diff --git a/.github/workflows/lint.yml b/.github/workflows/lint.yml
index 2ef75c27e04..8298448674c 100644
--- a/.github/workflows/lint.yml
+++ b/.github/workflows/lint.yml
@@ -86,7 +86,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        tags: "${{ fromJson(needs.nf-core-changes.outputs.modules_files) }}"
+        files: "${{ fromJson(needs.nf-core-changes.outputs.modules_files) }}"
     steps:
       - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4
 
@@ -117,8 +117,16 @@ jobs:
       - name: Install nf-core tools development version
         run: python -m pip install --upgrade --force-reinstall git+https://github.com/nf-core/tools.git@dev
 
-      - name: Lint module ${{ matrix.tags }}
-        run: nf-core modules lint ${{ matrix.tags }}
+      - name: Get module name
+        uses: actions/github-script@60a0d83039c74a4aee543508d2ffcb1c3799cdea # v7
+        id: name
+        with:
+          result-encoding: string
+          script: |
+            return '${{ matrix.files }}'.replace('modules/nf-core/', '').replace('/main.nf', '');
+
+      - name: Lint module ${{steps.name.outputs.result}}
+        run: nf-core modules lint ${{steps.name.outputs.result}}
 
   nf-core-lint-subworkflows:
     runs-on: ubuntu-latest
@@ -128,7 +136,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        tags: "${{ fromJson(needs.nf-core-changes.outputs.subworkflows_files) }}"
+        files: "${{ fromJson(needs.nf-core-changes.outputs.subworkflows_files) }}"
     steps:
       - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4
 
@@ -151,8 +159,16 @@ jobs:
       - name: Install nf-core tools development version
         run: python -m pip install --upgrade --force-reinstall git+https://github.com/nf-core/tools.git@dev
 
-      - name: Lint module ${{ matrix.tags }}
-        run: nf-core subworkflows lint ${{ matrix.tags }}
+      - name: Get module name
+        uses: actions/github-script@60a0d83039c74a4aee543508d2ffcb1c3799cdea # v7
+        id: name
+        with:
+          result-encoding: string
+          script: |
+            return '${{ matrix.files }}'.replace('modules/nf-core/', '').replace('/main.nf', '');
+
+      - name: Lint subworkflow ${{steps.name.outputs.result}}
+        run: nf-core subworkflows lint ${{steps.name.outputs.result}}
 
   confirm-pass:
     runs-on: ubuntu-latest