From f52ae506b02e19fdf15bda7d4f8dcf453eb66296 Mon Sep 17 00:00:00 2001
From: "James A. Fellows Yates" <jfy133@gmail.com>
Date: Fri, 17 Jan 2025 10:02:03 +0100
Subject: [PATCH] Check presence of unstable

---
 .../catpack/prepare/tests/main.nf.test        |  8 ++-
 .../catpack/prepare/tests/main.nf.test.snap   | 61 +++++--------------
 2 files changed, 21 insertions(+), 48 deletions(-)

diff --git a/modules/nf-core/catpack/prepare/tests/main.nf.test b/modules/nf-core/catpack/prepare/tests/main.nf.test
index d3a7599c37b..c4ba34f6f54 100644
--- a/modules/nf-core/catpack/prepare/tests/main.nf.test
+++ b/modules/nf-core/catpack/prepare/tests/main.nf.test
@@ -24,10 +24,16 @@ nextflow_process {
         }
 
         then {
+            def stablefiles = []
+            file(process.out.db.get(0).get(1)).eachFileRecurse{ file -> if (!file.isDirectory() && !["database.log"].find {file.toString().endsWith(it)}) {stablefiles.add(file)} }
+            def unstablefiles = []
+            file(process.out.db.get(0).get(1)).eachFileRecurse{ file -> if (["database.log"].find {file.toString().endsWith(it)}) {unstablefiles.add(file.getName().toString())} }
             assertAll(
                 { assert process.success },
                 { assert snapshot(
-                        process.out,
+                        stablefiles.sort(),
+                        unstablefiles.sort(),
+                        process.out.versions
                     ).match() }
             )
         }
diff --git a/modules/nf-core/catpack/prepare/tests/main.nf.test.snap b/modules/nf-core/catpack/prepare/tests/main.nf.test.snap
index 8bbd6934fe8..c5b5c9c0d2e 100644
--- a/modules/nf-core/catpack/prepare/tests/main.nf.test.snap
+++ b/modules/nf-core/catpack/prepare/tests/main.nf.test.snap
@@ -1,58 +1,25 @@
 {
     "metagenome -sarscov2 - fasta": {
         "content": [
-            {
-                "0": [
-                    [
-                        {
-                            "id": "test"
-                        },
-                        [
-                            "database.log:md5,9f6567ac9cabc9953dc5d0813d816d30",
-                            [
-                                "database.dmnd:md5,fd719846b0f5a177642fbddf461a5737",
-                                "database.fastaid2LCAtaxid:md5,d41d8cd98f00b204e9800998ecf8427e",
-                                "database.taxids_with_multiple_offspring:md5,d41d8cd98f00b204e9800998ecf8427e"
-                            ],
-                            [
-                                "names.dmp:md5,c471c27a4ce85ae74d2c63633c9ce1e3",
-                                "nodes.dmp:md5,130f9132095562e09c732679c562f5e9"
-                            ]
-                        ]
-                    ]
-                ],
-                "1": [
-                    "versions.yml:md5,d851e296d4025a8060b6283ad3b63937"
-                ],
-                "db": [
-                    [
-                        {
-                            "id": "test"
-                        },
-                        [
-                            "database.log:md5,9f6567ac9cabc9953dc5d0813d816d30",
-                            [
-                                "database.dmnd:md5,fd719846b0f5a177642fbddf461a5737",
-                                "database.fastaid2LCAtaxid:md5,d41d8cd98f00b204e9800998ecf8427e",
-                                "database.taxids_with_multiple_offspring:md5,d41d8cd98f00b204e9800998ecf8427e"
-                            ],
-                            [
-                                "names.dmp:md5,c471c27a4ce85ae74d2c63633c9ce1e3",
-                                "nodes.dmp:md5,130f9132095562e09c732679c562f5e9"
-                            ]
-                        ]
-                    ]
-                ],
-                "versions": [
-                    "versions.yml:md5,d851e296d4025a8060b6283ad3b63937"
-                ]
-            }
+            [
+                "database.dmnd:md5,fd719846b0f5a177642fbddf461a5737",
+                "database.fastaid2LCAtaxid:md5,d41d8cd98f00b204e9800998ecf8427e",
+                "database.taxids_with_multiple_offspring:md5,d41d8cd98f00b204e9800998ecf8427e",
+                "names.dmp:md5,c471c27a4ce85ae74d2c63633c9ce1e3",
+                "nodes.dmp:md5,130f9132095562e09c732679c562f5e9"
+            ],
+            [
+                "database.log"
+            ],
+            [
+                "versions.yml:md5,d851e296d4025a8060b6283ad3b63937"
+            ]
         ],
         "meta": {
             "nf-test": "0.9.0",
             "nextflow": "24.10.2"
         },
-        "timestamp": "2025-01-17T08:47:32.989772786"
+        "timestamp": "2025-01-17T10:01:05.480865778"
     },
     "metagenome -sarscov2 - fasta - stub": {
         "content": [