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modules.json
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{
"name": "nf-core/sammyseq",
"homePage": "https://github.com/nf-core/sammyseq",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bwa/aln": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["fastq_align_bwaaln", "modules"]
},
"bwa/index": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"bwa/sampe": {
"branch": "master",
"git_sha": "1e2b7fb7106852388610c0360d234b0829eb980e",
"installed_by": ["fastq_align_bwaaln"]
},
"bwa/samse": {
"branch": "master",
"git_sha": "1e2b7fb7106852388610c0360d234b0829eb980e",
"installed_by": ["fastq_align_bwaaln"]
},
"cat/fastq": {
"branch": "master",
"git_sha": "02fd5bd7275abad27aad32d5c852e0a9b1b98882",
"installed_by": ["modules"]
},
"custom/dumpsoftwareversions": {
"branch": "master",
"git_sha": "8ec825f465b9c17f9d83000022995b4f7de6fe93",
"installed_by": ["modules"]
},
"deeptools/bamcoverage": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"fastqc": {
"branch": "master",
"git_sha": "f4ae1d942bd50c5c0b9bd2de1393ce38315ba57c",
"installed_by": ["modules"]
},
"gunzip": {
"branch": "master",
"git_sha": "3a5fef109d113b4997c9822198664ca5f2716208",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "9e71d8519dfbfc328c078bba14d4bd4c99e39a94",
"installed_by": ["modules"]
},
"picard/markduplicates": {
"branch": "master",
"git_sha": "ec833ac4c29db6005d18baccf3306f557c46b006",
"installed_by": ["bam_markduplicates_picard", "modules"]
},
"samtools/faidx": {
"branch": "master",
"git_sha": "ce0b1aed7d504883061e748f492a31bf44c5777c",
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "ce0b1aed7d504883061e748f492a31bf44c5777c",
"installed_by": ["bam_stats_samtools"]
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "ce0b1aed7d504883061e748f492a31bf44c5777c",
"installed_by": ["bam_stats_samtools"]
},
"samtools/index": {
"branch": "master",
"git_sha": "ce0b1aed7d504883061e748f492a31bf44c5777c",
"installed_by": ["bam_markduplicates_picard", "fastq_align_bwaaln"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "ec833ac4c29db6005d18baccf3306f557c46b006",
"installed_by": ["bam_stats_samtools"]
},
"trimmomatic": {
"branch": "master",
"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
"installed_by": ["modules"]
},
"untar": {
"branch": "master",
"git_sha": "e719354ba77df0a1bd310836aa2039b45c29d620",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"bam_markduplicates_picard": {
"branch": "master",
"git_sha": "0c38be7e652a0b2f3a37681ee4c0dbdf85677647",
"installed_by": ["subworkflows"]
},
"bam_stats_samtools": {
"branch": "master",
"git_sha": "0c38be7e652a0b2f3a37681ee4c0dbdf85677647",
"installed_by": ["bam_markduplicates_picard"]
},
"fastq_align_bwaaln": {
"branch": "master",
"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
"installed_by": ["subworkflows"]
}
}
}
}
}
}