diff --git a/assets/schema_input.json b/assets/schema_input.json
index 7032375..7fe14b2 100644
--- a/assets/schema_input.json
+++ b/assets/schema_input.json
@@ -28,10 +28,10 @@
                 "errorMessage": "FastQ file for reads 2 cannot contain spaces and must have extension '.fq.gz' or '.fastq.gz'"
             },
             "experimentalID": {
-                    "type": "string",
-                    "pattern": "^\\S+$",
-                    "errorMessage": "experimentalID must be provided and cannot contain spaces",
-                    "meta": ["id"]
+                "type": "string",
+                "pattern": "^\\S+$",
+                "errorMessage": "experimentalID must be provided and cannot contain spaces",
+                "meta": ["id"]
             },
             "fraction": {
                 "type": "string",
diff --git a/modules.json b/modules.json
index eff5e10..be53375 100644
--- a/modules.json
+++ b/modules.json
@@ -8,131 +8,92 @@
                     "bwa/aln": {
                         "branch": "master",
                         "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
-                        "installed_by": [
-                            "fastq_align_bwaaln",
-                            "modules"
-                        ]
+                        "installed_by": ["fastq_align_bwaaln", "modules"]
                     },
                     "bwa/index": {
                         "branch": "master",
                         "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "bwa/sampe": {
                         "branch": "master",
                         "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
-                        "installed_by": [
-                            "fastq_align_bwaaln"
-                        ]
+                        "installed_by": ["fastq_align_bwaaln"]
                     },
                     "bwa/samse": {
                         "branch": "master",
                         "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
-                        "installed_by": [
-                            "fastq_align_bwaaln"
-                        ]
+                        "installed_by": ["fastq_align_bwaaln"]
                     },
                     "cat/fastq": {
                         "branch": "master",
                         "git_sha": "a1abf90966a2a4016d3c3e41e228bfcbd4811ccc",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "deeptools/bamcoverage": {
                         "branch": "master",
                         "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "fastqc": {
                         "branch": "master",
                         "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "gunzip": {
                         "branch": "master",
                         "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "multiqc": {
                         "branch": "master",
                         "git_sha": "cf17ca47590cc578dfb47db1c2a44ef86f89976d",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "picard/markduplicates": {
                         "branch": "master",
                         "git_sha": "49f4e50534fe4b64101e62ea41d5dc43b1324358",
-                        "installed_by": [
-                            "bam_markduplicates_picard",
-                            "modules"
-                        ]
+                        "installed_by": ["bam_markduplicates_picard", "modules"]
                     },
                     "samtools/faidx": {
                         "branch": "master",
                         "git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "samtools/flagstat": {
                         "branch": "master",
                         "git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
-                        "installed_by": [
-                            "bam_stats_samtools"
-                        ]
+                        "installed_by": ["bam_stats_samtools"]
                     },
                     "samtools/idxstats": {
                         "branch": "master",
                         "git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
-                        "installed_by": [
-                            "bam_stats_samtools"
-                        ]
+                        "installed_by": ["bam_stats_samtools"]
                     },
                     "samtools/index": {
                         "branch": "master",
                         "git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
-                        "installed_by": [
-                            "bam_markduplicates_picard",
-                            "fastq_align_bwaaln"
-                        ]
+                        "installed_by": ["bam_markduplicates_picard", "fastq_align_bwaaln"]
                     },
                     "samtools/stats": {
                         "branch": "master",
                         "git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
-                        "installed_by": [
-                            "bam_stats_samtools"
-                        ]
+                        "installed_by": ["bam_stats_samtools"]
                     },
                     "trimgalore": {
                         "branch": "master",
                         "git_sha": "8c5eeedd45e295fc9a4f164631da6a8b37e6b9c6",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "trimmomatic": {
                         "branch": "master",
                         "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "untar": {
                         "branch": "master",
                         "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     }
                 }
             },
@@ -141,47 +102,35 @@
                     "bam_markduplicates_picard": {
                         "branch": "master",
                         "git_sha": "49f4e50534fe4b64101e62ea41d5dc43b1324358",
-                        "installed_by": [
-                            "subworkflows"
-                        ]
+                        "installed_by": ["subworkflows"]
                     },
                     "bam_stats_samtools": {
                         "branch": "master",
                         "git_sha": "763d4b5c05ffda3ac1ac969dc67f7458cfb2eb1d",
-                        "installed_by": [
-                            "bam_markduplicates_picard"
-                        ]
+                        "installed_by": ["bam_markduplicates_picard"]
                     },
                     "fastq_align_bwaaln": {
                         "branch": "master",
                         "git_sha": "c60c14b285b89bdd0607e371417dadb80385ad6e",
-                        "installed_by": [
-                            "subworkflows"
-                        ]
+                        "installed_by": ["subworkflows"]
                     },
                     "utils_nextflow_pipeline": {
                         "branch": "master",
                         "git_sha": "56372688d8979092cafbe0c5c3895b491166ca1c",
-                        "installed_by": [
-                            "subworkflows"
-                        ]
+                        "installed_by": ["subworkflows"]
                     },
                     "utils_nfcore_pipeline": {
                         "branch": "master",
                         "git_sha": "1b6b9a3338d011367137808b49b923515080e3ba",
-                        "installed_by": [
-                            "subworkflows"
-                        ]
+                        "installed_by": ["subworkflows"]
                     },
                     "utils_nfschema_plugin": {
                         "branch": "master",
                         "git_sha": "2fd2cd6d0e7b273747f32e465fdc6bcc3ae0814e",
-                        "installed_by": [
-                            "subworkflows"
-                        ]
+                        "installed_by": ["subworkflows"]
                     }
                 }
             }
         }
     }
-}
\ No newline at end of file
+}
diff --git a/nextflow_schema.json b/nextflow_schema.json
index 5710e9e..64e107d 100644
--- a/nextflow_schema.json
+++ b/nextflow_schema.json
@@ -10,10 +10,7 @@
             "type": "object",
             "fa_icon": "fas fa-terminal",
             "description": "Define where the pipeline should find input data and save output data.",
-            "required": [
-                "input",
-                "outdir"
-            ],
+            "required": ["input", "outdir"],
             "properties": {
                 "input": {
                     "type": "string",
@@ -179,14 +176,7 @@
                     "description": "Method used to save pipeline results to output directory.",
                     "help_text": "The Nextflow `publishDir` option specifies which intermediate files should be saved to the output directory. This option tells the pipeline what method should be used to move these files. See [Nextflow docs](https://www.nextflow.io/docs/latest/process.html#publishdir) for details.",
                     "fa_icon": "fas fa-copy",
-                    "enum": [
-                        "symlink",
-                        "rellink",
-                        "link",
-                        "copy",
-                        "copyNoFollow",
-                        "move"
-                    ],
+                    "enum": ["symlink", "rellink", "link", "copy", "copyNoFollow", "move"],
                     "hidden": true
                 },
                 "email_on_fail": {