From bd09b52d8ab7436d0a293042b65efb2b258149a2 Mon Sep 17 00:00:00 2001
From: fferrari <fferrari@users.noreply.github.com>
Date: Tue, 7 Jan 2025 14:47:40 +0100
Subject: [PATCH 1/3] Update README.md

just proposing a revised description of the pipeline original development contributions
---
 README.md | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/README.md b/README.md
index c778e51..abbb423 100644
--- a/README.md
+++ b/README.md
@@ -99,11 +99,11 @@ For more details about the output files and reports, please refer to the
 
 ## Credits
 
-nf-core/sammyseq was written by Lucio Di Filippo and Margherita Mutarelli and was based on the original pipeline developed _in-house_ by SAMMY-seq creators. <!-- TODO retreive all names and github usernames -->
+The SAMMY-seq data analysis procedure was originally developed by the laboratory of Francesco Ferrari (IFOM-ETS, Milan; IGM-CNR, Pavia) in collaboration with the laboratory of Chiara Lanzuolo (INGM, Milan; ITB-CNR, Milan).
+The orginal pipeline backbone was mainly he result of work by Cristiano Petrini (IFOM) and Endre Sebestyén (IFOM), with significant contributions by Ilario Tagliaferri (IFOM), Giovanni Lembo (IFOM) and Emanuele Di Patrizio Soldateschi (INGM). The project also benefited from the collaboration and input by Eva Pinatel (ITB-CNR). The product of this effort resulted in a first pipeline implemented in bash and adapted to work on Sun Grid Engine (SGE) scheduler.
 
-<!-- We thank the following people for their extensive assistance in the development of this pipeline: -->
+The data analysis pipeline was then implemented into the Nextflow framework (nf-core/sammyseq ) by Lucio Di Filippo (ISASI-CNR, Pozzuoli) and Margherita Mutarelli (ISASI-CNR).
 
-<!-- TODO nf-core: If applicable, make list of people who have also contributed -->
 
 ## Acknowledgements
 

From 83a2311e2e009f481806a47690a4e5dcf4049013 Mon Sep 17 00:00:00 2001
From: nf-core-bot <core@nf-co.re>
Date: Wed, 8 Jan 2025 10:46:30 +0000
Subject: [PATCH 2/3] [automated] Fix code linting

---
 README.md | 1 -
 1 file changed, 1 deletion(-)

diff --git a/README.md b/README.md
index abbb423..30c0130 100644
--- a/README.md
+++ b/README.md
@@ -104,7 +104,6 @@ The orginal pipeline backbone was mainly he result of work by Cristiano Petrini
 
 The data analysis pipeline was then implemented into the Nextflow framework (nf-core/sammyseq ) by Lucio Di Filippo (ISASI-CNR, Pozzuoli) and Margherita Mutarelli (ISASI-CNR).
 
-
 ## Acknowledgements
 
 The development of this pipeline was made possible thanks to the projects Progetti@CNR Myo-CoV-2 B93C20046330005, AFM Téléthon EDMD-GenomeSCAN B53C22009260007 and PIR01_00011 I.Bi.S.Co. Infrastruttura per Big data e Scientific COmputing (PON 2014-2020).

From b518fd6e50c2a1ef935a0475bad420ef90caf0e6 Mon Sep 17 00:00:00 2001
From: Margherita <86382379+daisymut@users.noreply.github.com>
Date: Thu, 9 Jan 2025 11:01:50 +0100
Subject: [PATCH 3/3] restored a commented line

---
 README.md | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/README.md b/README.md
index 30c0130..67db589 100644
--- a/README.md
+++ b/README.md
@@ -104,6 +104,8 @@ The orginal pipeline backbone was mainly he result of work by Cristiano Petrini
 
 The data analysis pipeline was then implemented into the Nextflow framework (nf-core/sammyseq ) by Lucio Di Filippo (ISASI-CNR, Pozzuoli) and Margherita Mutarelli (ISASI-CNR).
 
+<!-- We thank the following people for their extensive assistance in the development of this pipeline: -->
+
 ## Acknowledgements
 
 The development of this pipeline was made possible thanks to the projects Progetti@CNR Myo-CoV-2 B93C20046330005, AFM Téléthon EDMD-GenomeSCAN B53C22009260007 and PIR01_00011 I.Bi.S.Co. Infrastruttura per Big data e Scientific COmputing (PON 2014-2020).