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create-lint-wf.yml
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name: Create a pipeline and run nf-core linting
on:
push:
branches:
- dev
paths-ignore:
- "docs/**"
- "CHANGELOG.md"
pull_request:
release:
types: [published]
workflow_dispatch:
inputs:
runners:
description: "Runners to test on"
type: choice
options:
- "ubuntu-latest"
- "self-hosted"
default: "self-hosted"
# Cancel if a newer run is started
concurrency:
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
cancel-in-progress: true
env:
NXF_ANSI_LOG: false
jobs:
MakeTestWorkflow:
runs-on: ${{ github.event.inputs.runners || 'self-hosted' }}
env:
NXF_ANSI_LOG: false
strategy:
matrix:
NXF_VER:
- "23.04.0"
- "latest-everything"
steps:
- name: go to subdirectory and change nextflow workdir
run: |
mkdir -p create-lint-wf
cd create-lint-wf
export NXF_WORK=$(pwd)
# Get the repo code
- uses: actions/checkout@v4
name: Check out source-code repository
# Set up nf-core/tools
- name: Set up Python 3.11
uses: actions/setup-python@v5
with:
python-version: 3.11
cache: pip
- name: Install python dependencies
run: |
python -m pip install --upgrade pip
pip install .
- name: run create-lint-wf
uses: ./.github/actions/create-lint-wf
with:
NXF_VER: ${{ matrix.NXF_VER }}