From 5d899a2aa6c55ee49bc595f1de94b432a014732f Mon Sep 17 00:00:00 2001
From: Edmund Miller <git@edmundmiller.dev>
Date: Tue, 27 Feb 2024 11:53:26 -0600
Subject: [PATCH] style: Align all params by ='s

Could also do it by section but currently it was just chaos
---
 nf_core/pipeline-template/nextflow.config | 60 +++++++++++------------
 1 file changed, 30 insertions(+), 30 deletions(-)

diff --git a/nf_core/pipeline-template/nextflow.config b/nf_core/pipeline-template/nextflow.config
index 2a99202db4..ef846ff38b 100644
--- a/nf_core/pipeline-template/nextflow.config
+++ b/nf_core/pipeline-template/nextflow.config
@@ -11,53 +11,53 @@ params {
 
     // TODO nf-core: Specify your pipeline's command line flags
     // Input options
-    input                      = null
+    input                            = null
 
     {%- if igenomes %}
     // References
-    genome                     = null
-    igenomes_base              = 's3://ngi-igenomes/igenomes/'
-    igenomes_ignore            = false
+    genome                           = null
+    igenomes_base                    = 's3://ngi-igenomes/igenomes/'
+    igenomes_ignore                  = false
     {% else %}
-    fasta                      = null
+    fasta                            = null
     {%- endif %}
 
     // MultiQC options
-    multiqc_config             = null
-    multiqc_title              = null
-    multiqc_logo               = null
-    max_multiqc_email_size     = '25.MB'
-    multiqc_methods_description = null
+    multiqc_config                   = null
+    multiqc_title                    = null
+    multiqc_logo                     = null
+    max_multiqc_email_size           = '25.MB'
+    multiqc_methods_description      = null
 
     // Boilerplate options
-    outdir                     = null
-    publish_dir_mode           = 'copy'
-    email                      = null
-    email_on_fail              = null
-    plaintext_email            = false
-    monochrome_logs            = false
-    hook_url                   = null
-    help                       = false
-    version                    = false
+    outdir                           = null
+    publish_dir_mode                 = 'copy'
+    email                            = null
+    email_on_fail                    = null
+    plaintext_email                  = false
+    monochrome_logs                  = false
+    hook_url                         = null
+    help                             = false
+    version                          = false
 
     // Config options
-    config_profile_name        = null
-    config_profile_description = null
+    config_profile_name              = null
+    config_profile_description       = null
 
     {%- if nf_core_configs %}
-    custom_config_version      = 'master'
-    custom_config_base         = "https://raw.githubusercontent.com/nf-core/configs/${params.custom_config_version}"
-    config_profile_contact     = null
-    config_profile_contact_github = null
-    config_profile_contact_email = null
-    config_profile_url         = null
+    custom_config_version            = 'master'
+    custom_config_base               = "https://raw.githubusercontent.com/nf-core/configs/${params.custom_config_version}"
+    config_profile_contact           = null
+    config_profile_contact_github    = null
+    config_profile_contact_email     = null
+    config_profile_url               = null
     {% endif %}
 
     // Max resource options
     // Defaults only, expecting to be overwritten
-    max_memory                 = '128.GB'
-    max_cpus                   = 16
-    max_time                   = '240.h'
+    max_memory                       = '128.GB'
+    max_cpus                         = 16
+    max_time                         = '240.h'
 
     // Schema validation default options
     validationFailUnrecognisedParams = false