From e999191cb2cd1ab59566e598616aad877226c678 Mon Sep 17 00:00:00 2001
From: mashehu <mashehu3@gmail.com>
Date: Fri, 10 Nov 2023 11:32:29 +0100
Subject: [PATCH] handle custom error messages from schemas

---
 nf_core/modules/lint/meta_yml.py | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/nf_core/modules/lint/meta_yml.py b/nf_core/modules/lint/meta_yml.py
index 446cf6dbb8..69fb90c3f9 100644
--- a/nf_core/modules/lint/meta_yml.py
+++ b/nf_core/modules/lint/meta_yml.py
@@ -56,6 +56,8 @@ def meta_yml(module_lint_object, module):
             hint = f"\nCheck the entry for `{e.path[0]}`."
         if e.message.startswith("None is not of type 'object'") and len(e.path) > 2:
             hint = f"\nCheck that the child entries of {e.path[0]+'.'+e.path[2]} are indented correctly."
+        if e.schema.get("message"):
+            e.message = e.schema["message"]
         module.failed.append(
             (
                 "meta_yml_valid",