diff --git a/.cache.tar.xz b/.cache.tar.xz index 184cb6bc29..1435eaafe7 100644 Binary files a/.cache.tar.xz and b/.cache.tar.xz differ diff --git a/public/components.json b/public/components.json index 69be4a7b21..78a716207b 100644 --- a/public/components.json +++ b/public/components.json @@ -444,7 +444,7 @@ }, { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -3990,6 +3990,10 @@ "name": "rnafusion", "version": "3.0.1" }, + { + "name": "rnafusion", + "version": "3.0.1" + }, { "name": "rnafusion", "version": "3.0.1" @@ -7221,7 +7225,7 @@ }, { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -14506,7 +14510,7 @@ }, { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" }, { "name": "viralrecon", @@ -14629,7 +14633,7 @@ }, { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" }, { "name": "viralrecon", @@ -14885,7 +14889,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -14960,7 +14964,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -16662,7 +16666,7 @@ }, { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" }, { "name": "viralrecon", @@ -18416,7 +18420,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -18503,7 +18507,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -24531,7 +24535,7 @@ }, { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" }, { "name": "variantcatalogue", @@ -27938,7 +27942,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -31281,7 +31285,7 @@ }, { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -32453,7 +32457,7 @@ }, { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" }, { "name": "viralrecon", @@ -32745,7 +32749,7 @@ }, { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" }, { "name": "variantcatalogue", @@ -33745,7 +33749,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -35563,7 +35567,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -35651,7 +35655,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -35733,7 +35737,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -37369,6 +37373,10 @@ "name": "rnadnavar", "version": "dev" }, + { + "name": "rnadnavar", + "version": "dev" + }, { "name": "rnadnavar", "version": "dev" @@ -38786,6 +38794,10 @@ "name": "rnadnavar", "version": "dev" }, + { + "name": "rnadnavar", + "version": "dev" + }, { "name": "rnadnavar", "version": "dev" @@ -43355,6 +43367,10 @@ "name": "rnadnavar", "version": "dev" }, + { + "name": "rnadnavar", + "version": "dev" + }, { "name": "rnadnavar", "version": "dev" @@ -53015,7 +53031,7 @@ }, { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" }, { "name": "viralrecon", @@ -59401,7 +59417,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -59479,7 +59495,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -59566,7 +59582,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -60816,7 +60832,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -60901,7 +60917,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -61117,7 +61133,7 @@ }, { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" }, { "name": "viralrecon", @@ -61198,7 +61214,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -61273,7 +61289,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -61549,7 +61565,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -61676,7 +61692,7 @@ }, { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -61755,7 +61771,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -64592,7 +64608,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -66876,7 +66892,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -68498,7 +68514,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -68599,7 +68615,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -69368,7 +69384,7 @@ }, { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -69452,7 +69468,7 @@ }, { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -71151,7 +71167,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -71256,7 +71272,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -72476,7 +72492,7 @@ }, { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" }, { "name": "variantcatalogue", @@ -82455,7 +82471,13 @@ "maintainers": [ "@leoisl" ] - } + }, + "pipelines": [ + { + "name": "createtaxdb", + "version": "dev" + } + ] }, { "name": "pigz_uncompress", @@ -84805,7 +84827,7 @@ }, { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -85322,7 +85344,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -92452,7 +92474,7 @@ }, { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -93244,7 +93266,7 @@ }, { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" }, { "name": "variantcatalogue", @@ -94024,7 +94046,7 @@ }, { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" }, { "name": "viralrecon", @@ -94225,7 +94247,7 @@ }, { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" }, { "name": "viralrecon", @@ -107795,7 +107817,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -107880,7 +107902,7 @@ "pipelines": [ { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" } ] }, @@ -111669,7 +111691,7 @@ }, { "name": "taxprofiler", - "version": "1.1.4" + "version": "1.1.5" }, { "name": "viralrecon", @@ -111824,6 +111846,10 @@ ] }, "pipelines": [ + { + "name": "createtaxdb", + "version": "dev" + }, { "name": "rnadnavar", "version": "dev" @@ -122153,6 +122179,10 @@ "name": "fetchngs", "version": "1.11.0" }, + { + "name": "fetchngs", + "version": "1.11.0" + }, { "name": "fetchngs", "version": "1.11.0" @@ -122986,6 +123016,10 @@ "name": "fetchngs", "version": "1.11.0" }, + { + "name": "fetchngs", + "version": "1.11.0" + }, { "name": "fetchngs", "version": "1.11.0" @@ -123852,6 +123886,10 @@ "name": "fetchngs", "version": "1.11.0" }, + { + "name": "fetchngs", + "version": "1.11.0" + }, { "name": "fetchngs", "version": "1.11.0" diff --git a/public/pipelines.json b/public/pipelines.json index 23fd6dece4..b11a93a2b7 100644 --- a/public/pipelines.json +++ b/public/pipelines.json @@ -11,9 +11,9 @@ "url": "https://api.github.com/repos/nf-core/airrflow", "created_at": "2018-12-04T11:39:05Z", "updated_at": "2024-01-25T05:20:30Z", - "pushed_at": "2024-02-05T18:16:47Z", + "pushed_at": "2024-02-08T03:18:09Z", "homepage": "https://nf-co.re/airrflow", - "size": 6529, + "size": 6554, "stargazers_count": 40, "watchers_count": 40, "language": "Nextflow", @@ -26,7 +26,7 @@ "forks_count": 25, "archived": false, "disabled": false, - "open_issues_count": 19, + "open_issues_count": 17, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -39,13 +39,13 @@ ], "visibility": "public", "forks": 25, - "open_issues": 19, + "open_issues": 17, "watchers": 40, "default_branch": "master", "custom_properties": {}, "network_count": 25, "subscribers_count": 123, - "open_pr_count": 3, + "open_pr_count": 2, "contributors": [ { "name": "ggabernet", @@ -280,8 +280,8 @@ }, { "tag_name": "dev", - "published_at": "2024-02-05T18:16:47Z", - "tag_sha": "4bf4f7dc8f1f2c6b851f17ffb38181189aa91f35", + "published_at": "2024-02-08T03:18:08Z", + "tag_sha": "dd0ef85e4bfea74839e51e6e83e695e8e056ea11", "has_schema": true, "doc_files": [ "docs/output.md", @@ -309,7 +309,7 @@ "url": "https://api.github.com/repos/nf-core/ampliseq", "created_at": "2018-09-26T15:24:54Z", "updated_at": "2024-02-01T22:50:31Z", - "pushed_at": "2024-02-07T20:44:28Z", + "pushed_at": "2024-02-08T12:57:16Z", "homepage": "https://nf-co.re/ampliseq", "size": 13707, "stargazers_count": 146, @@ -352,7 +352,7 @@ "default_branch": "master", "custom_properties": {}, "network_count": 92, - "subscribers_count": 128, + "subscribers_count": 127, "open_pr_count": 1, "contributors": [ { @@ -1429,7 +1429,7 @@ "default_branch": "master", "custom_properties": {}, "network_count": 29, - "subscribers_count": 126, + "subscribers_count": 125, "open_pr_count": 1, "contributors": [ { @@ -2127,7 +2127,7 @@ "default_branch": "master", "custom_properties": {}, "network_count": 1, - "subscribers_count": 134, + "subscribers_count": 133, "open_pr_count": 1, "contributors": [ { @@ -2221,7 +2221,7 @@ "has_wiki": false, "has_pages": false, "has_discussions": false, - "forks_count": 126, + "forks_count": 127, "archived": false, "disabled": false, "open_issues_count": 34, @@ -2236,12 +2236,12 @@ "peak-calling" ], "visibility": "public", - "forks": 126, + "forks": 127, "open_issues": 34, "watchers": 159, "default_branch": "master", "custom_properties": {}, - "network_count": 126, + "network_count": 127, "subscribers_count": 119, "open_pr_count": 3, "contributors": [ @@ -2489,9 +2489,9 @@ "url": "https://api.github.com/repos/nf-core/circdna", "created_at": "2021-11-02T09:45:33Z", "updated_at": "2024-02-07T09:32:00Z", - "pushed_at": "2024-02-04T12:04:53Z", + "pushed_at": "2024-02-08T11:32:30Z", "homepage": "https://nf-co.re/circdna", - "size": 192859, + "size": 192865, "stargazers_count": 25, "watchers_count": 25, "language": "Python", @@ -2767,8 +2767,8 @@ }, { "tag_name": "dev", - "published_at": "2024-02-04T12:04:49Z", - "tag_sha": "e2bcc60147e7f03d6f5d5a933fc835809bc1c612", + "published_at": "2024-02-08T11:32:24Z", + "tag_sha": "20e8d761f6f2015e7b2f7ddf98c4a3495d1eab51", "has_schema": true, "doc_files": [ "docs/output.md", @@ -2809,12 +2809,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/circrna", "created_at": "2021-02-10T14:28:49Z", - "updated_at": "2024-01-29T11:13:37Z", + "updated_at": "2024-02-08T09:03:28Z", "pushed_at": "2024-02-03T18:29:19Z", "homepage": "https://nf-co.re/circrna", "size": 64719, - "stargazers_count": 33, - "watchers_count": 33, + "stargazers_count": 34, + "watchers_count": 34, "language": "Nextflow", "has_issues": true, "has_projects": true, @@ -2843,7 +2843,7 @@ "visibility": "public", "forks": 16, "open_issues": 10, - "watchers": 33, + "watchers": 34, "default_branch": "dev", "custom_properties": {}, "network_count": 16, @@ -3257,9 +3257,9 @@ "url": "https://api.github.com/repos/nf-core/createtaxdb", "created_at": "2023-10-24T08:41:35Z", "updated_at": "2024-02-01T17:49:15Z", - "pushed_at": "2024-02-01T10:40:49Z", + "pushed_at": "2024-02-08T10:39:27Z", "homepage": "https://nf-co.re/createtaxdb", - "size": 2526, + "size": 2722, "stargazers_count": 3, "watchers_count": 3, "language": "Nextflow", @@ -3272,32 +3272,32 @@ "forks_count": 0, "archived": false, "disabled": false, - "open_issues_count": 15, + "open_issues_count": 16, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, "topics": [], "visibility": "public", "forks": 0, - "open_issues": 15, + "open_issues": 16, "watchers": 3, "default_branch": "dev", "custom_properties": {}, "network_count": 0, - "subscribers_count": 173, + "subscribers_count": 170, "open_pr_count": 0, "contributors": [ { "name": "jfy133", - "count": 27, + "count": 41, "avatar_url": "https://avatars.githubusercontent.com/u/17950287?v=4" } ], "releases": [ { "tag_name": "dev", - "published_at": "2024-01-30T14:51:53Z", - "tag_sha": "8c5e8adb69408a400ddfc5cbea01978b88ef6262", + "published_at": "2024-02-08T10:39:14Z", + "tag_sha": "fa482c395d6c54c34101364585de5e9c08033e62", "has_schema": true, "doc_files": [ "docs/output.md", @@ -3310,7 +3310,9 @@ "diamond_makedb", "kaiju_mkfmi", "malt_build", - "multiqc" + "multiqc", + "pigz_compress", + "unzip" ] } } @@ -4790,7 +4792,7 @@ "forks_count": 23, "archived": false, "disabled": false, - "open_issues_count": 30, + "open_issues_count": 32, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -4803,7 +4805,7 @@ ], "visibility": "public", "forks": 23, - "open_issues": 30, + "open_issues": 32, "watchers": 32, "default_branch": "master", "custom_properties": {}, @@ -5409,9 +5411,9 @@ "url": "https://api.github.com/repos/nf-core/detaxizer", "created_at": "2023-10-30T14:11:55Z", "updated_at": "2024-01-25T05:45:16Z", - "pushed_at": "2024-02-06T11:48:59Z", + "pushed_at": "2024-02-08T08:23:32Z", "homepage": "https://nf-co.re/detaxizer", - "size": 2885, + "size": 2888, "stargazers_count": 3, "watchers_count": 3, "language": "Nextflow", @@ -5441,7 +5443,7 @@ "contributors": [ { "name": "jannikseidelQBiC", - "count": 128, + "count": 130, "avatar_url": "https://avatars.githubusercontent.com/u/127119345?v=4" }, { @@ -5463,8 +5465,8 @@ "releases": [ { "tag_name": "dev", - "published_at": "2024-02-06T11:48:59Z", - "tag_sha": "567d8081ad3788ee574f56126bfa5e32f383d7a9", + "published_at": "2024-02-08T08:23:31Z", + "tag_sha": "4c66ada5c1548d4761317075507261f5ef56d540", "has_schema": true, "doc_files": [ "docs/output.md", @@ -5645,7 +5647,7 @@ "url": "https://api.github.com/repos/nf-core/differentialabundance", "created_at": "2022-10-12T08:49:25Z", "updated_at": "2024-02-07T09:34:37Z", - "pushed_at": "2024-02-02T10:46:48Z", + "pushed_at": "2024-02-08T08:59:01Z", "homepage": "https://nf-co.re/differentialabundance", "size": 7889, "stargazers_count": 38, @@ -5660,7 +5662,7 @@ "forks_count": 19, "archived": false, "disabled": false, - "open_issues_count": 31, + "open_issues_count": 33, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -5678,13 +5680,13 @@ ], "visibility": "public", "forks": 19, - "open_issues": 31, + "open_issues": 33, "watchers": 38, "default_branch": "master", "custom_properties": {}, "network_count": 19, "subscribers_count": 128, - "open_pr_count": 3, + "open_pr_count": 5, "contributors": [ { "name": "WackerO", @@ -6152,7 +6154,7 @@ "forks_count": 72, "archived": false, "disabled": false, - "open_issues_count": 60, + "open_issues_count": 63, "allow_forking": true, "is_template": false, "web_commit_signoff_required": false, @@ -6167,7 +6169,7 @@ ], "visibility": "public", "forks": 72, - "open_issues": 60, + "open_issues": 63, "watchers": 117, "default_branch": "master", "custom_properties": {}, @@ -6630,12 +6632,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/epitopeprediction", "created_at": "2018-11-28T15:37:41Z", - "updated_at": "2024-02-01T07:33:27Z", + "updated_at": "2024-02-08T09:08:55Z", "pushed_at": "2024-02-07T15:10:13Z", "homepage": "https://nf-co.re/epitopeprediction", "size": 4417, - "stargazers_count": 30, - "watchers_count": 30, + "stargazers_count": 31, + "watchers_count": 31, "language": "Nextflow", "has_issues": true, "has_projects": false, @@ -6658,7 +6660,7 @@ "visibility": "public", "forks": 19, "open_issues": 19, - "watchers": 30, + "watchers": 31, "default_branch": "master", "custom_properties": {}, "network_count": 19, @@ -7381,9 +7383,9 @@ "url": "https://api.github.com/repos/nf-core/funcscan", "created_at": "2021-12-13T10:35:54Z", "updated_at": "2024-01-25T05:18:28Z", - "pushed_at": "2024-02-07T21:02:50Z", + "pushed_at": "2024-02-08T14:00:32Z", "homepage": "https://nf-co.re/funcscan", - "size": 12558, + "size": 12596, "stargazers_count": 49, "watchers_count": 49, "language": "Nextflow", @@ -7885,7 +7887,7 @@ "has_wiki": false, "has_pages": false, "has_discussions": false, - "forks_count": 6, + "forks_count": 7, "archived": false, "disabled": false, "open_issues_count": 6, @@ -7901,12 +7903,12 @@ "genome-assembly" ], "visibility": "public", - "forks": 6, + "forks": 7, "open_issues": 6, "watchers": 13, "default_branch": "dev", "custom_properties": {}, - 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"watchers": 169, + "watchers": 170, "default_branch": "master", "custom_properties": {}, "network_count": 94, @@ -11192,7 +11194,7 @@ "has_wiki": false, "has_pages": false, "has_discussions": false, - "forks_count": 8, + "forks_count": 9, "archived": false, "disabled": false, "open_issues_count": 2, @@ -11214,12 +11216,12 @@ "tma" ], "visibility": "public", - "forks": 8, + "forks": 9, "open_issues": 2, "watchers": 2, "default_branch": "dev", "custom_properties": {}, - "network_count": 8, + "network_count": 9, "subscribers_count": 139, "open_pr_count": 1, "contributors": [ @@ -11496,12 +11498,12 @@ "fork": false, "url": "https://api.github.com/repos/nf-core/metatdenovo", "created_at": "2021-10-19T18:58:24Z", - "updated_at": "2024-01-24T13:40:08Z", - "pushed_at": "2024-02-07T16:41:12Z", + "updated_at": "2024-02-08T05:52:29Z", + "pushed_at": "2024-02-08T13:45:25Z", "homepage": "https://nf-co.re/metatdenovo", - "size": 13491, - "stargazers_count": 4, - "watchers_count": 4, + "size": 13668, + "stargazers_count": 5, + "watchers_count": 5, "language": "Nextflow", "has_issues": true, "has_projects": true, @@ -11512,24 +11514,24 @@ "forks_count": 8, "archived": false, "disabled": false, - 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