diff --git a/.cache.tar.xz b/.cache.tar.xz
index 0ee97fc532..80b8b2dc8d 100644
Binary files a/.cache.tar.xz and b/.cache.tar.xz differ
diff --git a/public/components.json b/public/components.json
index b12dd9ec26..7d0b35ebca 100644
--- a/public/components.json
+++ b/public/components.json
@@ -636,7 +636,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -988,6 +988,89 @@
         }
       ]
     },
+    {
+      "name": "agat_convertbed2gff",
+      "path": "modules/nf-core/agat/convertbed2gff/meta.yml",
+      "type": "module",
+      "meta": {
+        "name": "agat_convertbed2gff",
+        "description": "Takes a bed12 file and converts to a GFF3 file\n",
+        "keywords": [
+          "genome",
+          "bed",
+          "gff",
+          "conversion"
+        ],
+        "tools": [
+          {
+            "agat": {
+              "description": "AGAT is a toolkit for manipulation and getting information from GFF/GTF files",
+              "homepage": "https://github.com/NBISweden/AGAT",
+              "documentation": "https://agat.readthedocs.io/",
+              "tool_dev_url": "https://github.com/NBISweden/AGAT",
+              "doi": "10.5281/zenodo.3552717",
+              "licence": [
+                "GPL v3"
+              ],
+              "identifier": "biotools:AGAT"
+            }
+          }
+        ],
+        "input": [
+          [
+            {
+              "meta": {
+                "type": "map",
+                "description": "Groovy Map containing sample information\ne.g. [ id:'test', single_end:false ]\n"
+              }
+            },
+            {
+              "bed": {
+                "type": "file",
+                "description": "Input bed12 file",
+                "pattern": "*.bed"
+              }
+            }
+          ]
+        ],
+        "output": [
+          {
+            "gff": [
+              {
+                "meta": {
+                  "type": "map",
+                  "description": "Groovy Map containing sample information"
+                }
+              },
+              {
+                "*.gff": {
+                  "type": "file",
+                  "description": "Output GFF3 file",
+                  "pattern": "*.{gff}"
+                }
+              }
+            ]
+          },
+          {
+            "versions": [
+              {
+                "versions.yml": {
+                  "type": "file",
+                  "description": "File containing software versions",
+                  "pattern": "versions.yml"
+                }
+              }
+            ]
+          }
+        ],
+        "authors": [
+          "@GallVp"
+        ],
+        "maintainers": [
+          "@GallVp"
+        ]
+      }
+    },
     {
       "name": "agat_convertspgff2gtf",
       "path": "modules/nf-core/agat/convertspgff2gtf/meta.yml",
@@ -8613,6 +8696,14 @@
           "name": "rnafusion",
           "version": "3.0.2"
         },
+        {
+          "name": "rnafusion",
+          "version": "3.0.2"
+        },
+        {
+          "name": "rnafusion",
+          "version": "3.0.2"
+        },
         {
           "name": "rnafusion",
           "version": "3.0.2"
@@ -13168,7 +13259,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -24496,7 +24587,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         },
         {
           "name": "viralrecon",
@@ -24646,7 +24737,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         },
         {
           "name": "viralrecon",
@@ -25029,7 +25120,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -25223,7 +25314,7 @@
       "pipelines": [
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -27888,6 +27979,14 @@
           "name": "genomeassembler",
           "version": "dev"
         },
+        {
+          "name": "genomeassembler",
+          "version": "dev"
+        },
+        {
+          "name": "genomeassembler",
+          "version": "dev"
+        },
         {
           "name": "genomeassembler",
           "version": "dev"
@@ -30769,7 +30868,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         },
         {
           "name": "viralrecon",
@@ -30777,6 +30876,93 @@
         }
       ]
     },
+    {
+      "name": "catpack_download",
+      "path": "modules/nf-core/catpack/download/meta.yml",
+      "type": "module",
+      "meta": {
+        "name": "catpack_download",
+        "description": "Downloads the required files for either Nr or GTDB for building into a CAT database",
+        "keywords": [
+          "taxonomic classification",
+          "classification",
+          "database",
+          "download"
+        ],
+        "tools": [
+          {
+            "catpack": {
+              "description": "CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)",
+              "homepage": "https://github.com/MGXlab/CAT_pack",
+              "documentation": "https://github.com/MGXlab/CAT_pack",
+              "tool_dev_url": "https://github.com/MGXlab/CAT_pack",
+              "doi": "10.1186/s13059-019-1817-x",
+              "licence": [
+                "MIT"
+              ]
+            }
+          }
+        ],
+        "input": [
+          [
+            {
+              "meta": {
+                "type": "map",
+                "description": "Groovy Map containing sample information\ne.g. `[ id:'sample1', single_end:false ]`\n"
+              }
+            },
+            {
+              "db": {
+                "type": "string",
+                "description": "Which database to download",
+                "pattern": "nr|gtdb"
+              }
+            }
+          ]
+        ],
+        "output": [
+          {
+            "rawdb": [
+              {
+                "meta": {
+                  "type": "map",
+                  "description": "Groovy Map containing sample information\ne.g. `[ id:'sample1', single_end:false ]`\n"
+                }
+              },
+              {
+                "${prefix}/": {
+                  "type": "directory",
+                  "description": "Directory containing all the required NCBI Nr or GTDB database files required for building into a CAT database",
+                  "pattern": "${db}/",
+                  "ontologies": [
+                    {
+                      "edam": "http://edamontology.org/data_1049"
+                    }
+                  ]
+                }
+              }
+            ]
+          },
+          {
+            "versions": [
+              {
+                "versions.yml": {
+                  "type": "file",
+                  "description": "File containing software versions",
+                  "pattern": "versions.yml"
+                }
+              }
+            ]
+          }
+        ],
+        "authors": [
+          "@jfy133"
+        ],
+        "maintainers": [
+          "@jfy133"
+        ]
+      }
+    },
     {
       "name": "cdhit_cdhit",
       "path": "modules/nf-core/cdhit/cdhit/meta.yml",
@@ -33923,7 +34109,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -34027,7 +34213,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -49615,7 +49801,7 @@
       "pipelines": [
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -54734,7 +54920,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -56566,7 +56752,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         },
         {
           "name": "viralrecon",
@@ -56907,7 +57093,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         },
         {
           "name": "tbanalyzer",
@@ -59235,7 +59421,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -61940,7 +62126,7 @@
       "pipelines": [
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -62041,7 +62227,7 @@
       "pipelines": [
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -62134,7 +62320,7 @@
       "pipelines": [
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -86677,7 +86863,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         },
         {
           "name": "tfactivity",
@@ -94334,6 +94520,125 @@
         }
       ]
     },
+    {
+      "name": "immunedeconv",
+      "path": "modules/nf-core/immunedeconv/meta.yml",
+      "type": "module",
+      "meta": {
+        "name": "immunedeconv",
+        "description": "Perform immune cell deconvolution using RNA-seq data and various computational methods.",
+        "keywords": [
+          "Immune Deconvolution",
+          "RNA-seq",
+          "Bioinformatics Tools",
+          "Computational Immunology"
+        ],
+        "tools": [
+          {
+            "immunedeconv": {
+              "description": "The immunedeconv R package provides functions for immune cell deconvolution\nfrom RNA-seq data. It supports multiple deconvolution methods and generates\nresults as well as visualizations.\n",
+              "homepage": "https://github.com/icbi-lab/immunedeconv",
+              "documentation": "https://icbi-lab.github.io/immunedeconv/",
+              "licence": [
+                "GPL-2"
+              ]
+            }
+          }
+        ],
+        "input": [
+          [
+            {
+              "meta": {
+                "type": "map",
+                "description": "Groovy Map containing sample information\ne.g. `[ id:'sample1', single_end:false ]`\n"
+              }
+            },
+            {
+              "input_file": {
+                "type": "file",
+                "description": "Input matrix with genes in rows and samples in columns.",
+                "pattern": "*.tsv"
+              }
+            },
+            {
+              "method": {
+                "type": "string",
+                "description": "The deconvolution method to use (e.g., 'CIBERSORT', 'EPIC', 'xCell')."
+              }
+            },
+            {
+              "function": {
+                "type": "string",
+                "description": "The specific function from immunedeconv to execute for analysis."
+              }
+            }
+          ],
+          [
+            {
+              "gene_symbol_col": {
+                "type": "string",
+                "description": "Column name for gene symbols in the matrix input file."
+              }
+            }
+          ]
+        ],
+        "output": [
+          {
+            "deconv_table": [
+              {
+                "meta": {
+                  "type": "map",
+                  "description": "Groovy Map containing sample information\ne.g. `[ id:'sample1', single_end:false ]`\n"
+                }
+              },
+              {
+                "*.deconvolution_results.tsv": {
+                  "type": "file",
+                  "description": "Results table containing deconvolution data.",
+                  "pattern": "*.deconvolution_results.tsv"
+                }
+              }
+            ]
+          },
+          {
+            "deconv_plots": [
+              {
+                "meta": {
+                  "type": "map",
+                  "description": "Groovy Map containing sample information\ne.g. `[ id:'sample1', single_end:false ]`\n"
+                }
+              },
+              {
+                "*.png": {
+                  "type": "file",
+                  "description": "Visualization plots generated during deconvolution.",
+                  "pattern": "*.png"
+                }
+              }
+            ]
+          },
+          {
+            "versions": [
+              {
+                "versions.yml": {
+                  "type": "file",
+                  "description": "File containing software versions",
+                  "pattern": "versions.yml"
+                }
+              }
+            ]
+          }
+        ],
+        "authors": [
+          "@grst",
+          "@nschcolnicov"
+        ],
+        "maintainers": [
+          "@grst",
+          "@nschcolnicov"
+        ]
+      }
+    },
     {
       "name": "instrain_compare",
       "path": "modules/nf-core/instrain/compare/meta.yml",
@@ -98936,7 +99241,7 @@
       "pipelines": [
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -99033,7 +99338,7 @@
       "pipelines": [
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -99140,7 +99445,7 @@
       "pipelines": [
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -100907,7 +101212,7 @@
       "pipelines": [
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -101007,7 +101312,7 @@
       "pipelines": [
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -101604,7 +101909,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         },
         {
           "name": "viralrecon",
@@ -101696,7 +102001,7 @@
       "pipelines": [
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -101906,7 +102211,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -102276,7 +102581,7 @@
       "pipelines": [
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -102442,7 +102747,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -102534,7 +102839,7 @@
       "pipelines": [
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -108540,6 +108845,38 @@
           "name": "pathogensurveillance",
           "version": "dev"
         },
+        {
+          "name": "phyloplace",
+          "version": "1.0.0"
+        },
+        {
+          "name": "ampliseq",
+          "version": "2.12.0"
+        },
+        {
+          "name": "multiplesequencealign",
+          "version": "1.0.0"
+        },
+        {
+          "name": "pathogensurveillance",
+          "version": "dev"
+        },
+        {
+          "name": "phyloplace",
+          "version": "1.0.0"
+        },
+        {
+          "name": "ampliseq",
+          "version": "2.12.0"
+        },
+        {
+          "name": "multiplesequencealign",
+          "version": "1.0.0"
+        },
+        {
+          "name": "pathogensurveillance",
+          "version": "dev"
+        },
         {
           "name": "phyloplace",
           "version": "1.0.0"
@@ -109599,7 +109936,7 @@
       "pipelines": [
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -113069,7 +113406,7 @@
       "pipelines": [
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -114908,6 +115245,14 @@
           "name": "genomeassembler",
           "version": "dev"
         },
+        {
+          "name": "genomeassembler",
+          "version": "dev"
+        },
+        {
+          "name": "genomeassembler",
+          "version": "dev"
+        },
         {
           "name": "genomeassembler",
           "version": "dev"
@@ -117883,7 +118228,7 @@
       "pipelines": [
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -118017,7 +118362,7 @@
       "pipelines": [
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -119204,7 +119549,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -119303,7 +119648,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -121829,7 +122174,7 @@
                 }
               },
               {
-                "${prefix}": {
+                "${prefix}/": {
                   "type": "directory",
                   "description": "an MMseqs2 database with search results"
                 }
@@ -122918,7 +123263,7 @@
       "pipelines": [
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -123156,7 +123501,7 @@
       "pipelines": [
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -124787,7 +125132,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         },
         {
           "name": "tbanalyzer",
@@ -127334,7 +127679,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -129463,7 +129808,7 @@
       "pipelines": [
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -129623,7 +129968,7 @@
       "pipelines": [
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -129766,7 +130111,7 @@
       "pipelines": [
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -129858,7 +130203,7 @@
       "pipelines": [
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -133992,6 +134337,14 @@
           "name": "viralrecon",
           "version": "2.6.0"
         },
+        {
+          "name": "viralrecon",
+          "version": "2.6.0"
+        },
+        {
+          "name": "viralrecon",
+          "version": "2.6.0"
+        },
         {
           "name": "viralrecon",
           "version": "2.6.0"
@@ -145832,7 +146185,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -145961,7 +146314,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -146801,7 +147154,7 @@
       "pipelines": [
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -160238,7 +160591,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -161173,7 +161526,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         },
         {
           "name": "tbanalyzer",
@@ -162457,7 +162810,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         },
         {
           "name": "tbanalyzer",
@@ -162769,7 +163122,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         },
         {
           "name": "viralrecon",
@@ -184561,6 +184914,102 @@
         ]
       }
     },
+    {
+      "name": "taxonkit_lineage",
+      "path": "modules/nf-core/taxonkit/lineage/meta.yml",
+      "type": "module",
+      "meta": {
+        "name": "taxonkit_lineage",
+        "description": "Convert taxonids to taxon lineages",
+        "keywords": [
+          "taxonomy",
+          "taxids",
+          "taxon name",
+          "conversion"
+        ],
+        "tools": [
+          {
+            "taxonkit": {
+              "description": "A Cross-platform and Efficient NCBI Taxonomy Toolkit",
+              "homepage": "https://bioinf.shenwei.me/taxonkit/",
+              "documentation": "https://bioinf.shenwei.me/taxonkit/usage/#name2taxid",
+              "tool_dev_url": "https://github.com/shenwei356/taxonkit",
+              "doi": "10.1016/j.jgg.2021.03.006",
+              "licence": [
+                "MIT"
+              ],
+              "identifier": "biotools:taxonkit"
+            }
+          }
+        ],
+        "input": [
+          [
+            {
+              "meta": {
+                "type": "map",
+                "description": "Groovy Map containing sample information\ne.g. `[ id:'sample1', single_end:false ]`\n"
+              }
+            },
+            {
+              "taxid": {
+                "type": "string",
+                "description": "Taxon id to look up (provide either this or taxidfile, not both)"
+              }
+            },
+            {
+              "taxidfile": {
+                "type": "file",
+                "description": "File with taxon ids to look up, each on their own line (provide either this or name, not both; the file can contain other information, see the tool's docs)"
+              }
+            }
+          ],
+          [
+            {
+              "taxdb": {
+                "type": "file",
+                "description": "Taxonomy database unpacked from ftp://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz"
+              }
+            }
+          ]
+        ],
+        "output": [
+          {
+            "tsv": [
+              {
+                "meta": {
+                  "type": "map",
+                  "description": "Groovy Map containing sample information\ne.g. `[ id:'sample1', single_end:false ]`\n"
+                }
+              },
+              {
+                "*.tsv": {
+                  "type": "file",
+                  "description": "TSV file with added taxon lineages",
+                  "pattern": "*.tsv"
+                }
+              }
+            ]
+          },
+          {
+            "versions": [
+              {
+                "versions.yml": {
+                  "type": "file",
+                  "description": "File containing software versions",
+                  "pattern": "versions.yml"
+                }
+              }
+            ]
+          }
+        ],
+        "authors": [
+          "@erikrikarddaniel"
+        ],
+        "maintainers": [
+          "@erikrikarddaniel"
+        ]
+      }
+    },
     {
       "name": "taxonkit_name2taxid",
       "path": "modules/nf-core/taxonkit/name2taxid/meta.yml",
@@ -184782,7 +185231,7 @@
       "pipelines": [
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -184900,7 +185349,7 @@
       "pipelines": [
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         }
       ]
     },
@@ -192077,7 +192526,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         },
         {
           "name": "tumourevo",
@@ -209074,6 +209523,14 @@
           "name": "phageannotator",
           "version": "dev"
         },
+        {
+          "name": "phageannotator",
+          "version": "dev"
+        },
+        {
+          "name": "phageannotator",
+          "version": "dev"
+        },
         {
           "name": "phageannotator",
           "version": "dev"
@@ -212816,6 +213273,14 @@
           "name": "riboseq",
           "version": "1.0.1"
         },
+        {
+          "name": "riboseq",
+          "version": "1.0.1"
+        },
+        {
+          "name": "riboseq",
+          "version": "1.0.1"
+        },
         {
           "name": "riboseq",
           "version": "1.0.1"
@@ -213354,7 +213819,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         },
         {
           "name": "tbanalyzer",
@@ -213659,7 +214124,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         },
         {
           "name": "tbanalyzer",
@@ -213876,7 +214341,7 @@
         },
         {
           "name": "taxprofiler",
-          "version": "1.2.1"
+          "version": "1.2.2"
         },
         {
           "name": "tbanalyzer",
diff --git a/public/pipelines.json b/public/pipelines.json
index 47ece3ec87..00984ebfe4 100644
--- a/public/pipelines.json
+++ b/public/pipelines.json
@@ -10,12 +10,12 @@
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             "url": "https://api.github.com/repos/nf-core/airrflow",
             "created_at": "2018-12-04T11:39:05Z",
-            "updated_at": "2024-12-11T05:42:29Z",
+            "updated_at": "2025-01-15T21:30:17Z",
             "pushed_at": "2025-01-10T19:38:57Z",
             "homepage": "https://nf-co.re/airrflow",
             "size": 12620,
-            "stargazers_count": 55,
-            "watchers_count": 55,
+            "stargazers_count": 56,
+            "watchers_count": 56,
             "language": "Nextflow",
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             "has_projects": false,
@@ -26,7 +26,7 @@
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             "disabled": false,
-            "open_issues_count": 24,
+            "open_issues_count": 25,
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@@ -39,8 +39,8 @@
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             "visibility": "public",
             "forks": 38,
-            "open_issues": 24,
-            "watchers": 55,
+            "open_issues": 25,
+            "watchers": 56,
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@@ -147,7 +147,7 @@
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@@ -1538,7 +1538,7 @@
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@@ -1548,7 +1548,7 @@
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+            "open_issues": 42,
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@@ -2099,12 +2099,12 @@
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             "created_at": "2019-01-31T08:03:31Z",
-            "updated_at": "2025-01-14T12:25:50Z",
+            "updated_at": "2025-01-15T07:14:58Z",
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             "homepage": "https://nf-co.re/bacass",
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@@ -2115,7 +2115,7 @@
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@@ -2131,8 +2131,8 @@
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+            "open_issues": 20,
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@@ -10740,9 +10740,9 @@
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             "updated_at": "2025-01-10T15:59:00Z",
-            "pushed_at": "2025-01-14T17:19:27Z",
+            "pushed_at": "2025-01-15T22:16:13Z",
             "homepage": "https://nf-co.re/differentialabundance",
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+            "size": 9355,
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@@ -10755,7 +10755,7 @@
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             "archived": false,
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-            "open_issues_count": 84,
+            "open_issues_count": 81,
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@@ -10773,7 +10773,7 @@
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-            "open_issues": 84,
+            "open_issues": 81,
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@@ -10871,7 +10871,7 @@
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+            "open_pr_count": 7,
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@@ -11486,10 +11486,10 @@
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             "has_pages": false,
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-            "forks_count": 32,
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             "archived": false,
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@@ -11501,8 +11501,8 @@
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-            "open_issues": 23,
+            "forks": 33,
+            "open_issues": 24,
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@@ -11535,7 +11535,7 @@
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@@ -11620,7 +11620,7 @@
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             "TEMPLATE_restrict_push": true,
             "has_required_topics": true,
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+            "open_pr_count": 9,
             "repository_url": "https://github.com/nf-core/dualrnaseq",
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@@ -11722,7 +11722,7 @@
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@@ -11737,7 +11737,7 @@
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-            "open_issues": 48,
+            "open_issues": 49,
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@@ -11845,7 +11845,7 @@
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@@ -12891,10 +12891,10 @@
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             "created_at": "2024-09-06T16:54:32Z",
-            "updated_at": "2025-01-14T20:39:53Z",
-            "pushed_at": "2025-01-14T20:39:50Z",
+            "updated_at": "2025-01-15T20:33:23Z",
+            "pushed_at": "2025-01-15T20:33:21Z",
             "homepage": "https://nf-co.re/fastqrepair",
-            "size": 2551,
+            "size": 2562,
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             "language": "Nextflow",
@@ -13010,7 +13010,7 @@
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+                    "count": 68,
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@@ -13025,9 +13025,9 @@
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-            "head_sha": "4d75bcd35e4b865beb5434d5ebda1702a4c26d18",
+            "head_sha": "6370f33b41b352b9409d1a2fbe2ec27d5d059442",
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+            "last_release_vs_default_compare_url": "https://github.com/nf-core/fastqrepair/compare/6370f33b41b352b9409d1a2fbe2ec27d5d059442...undefined",
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@@ -13050,8 +13050,8 @@
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-                    "tag_sha": "4d75bcd35e4b865beb5434d5ebda1702a4c26d18",
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@@ -13895,9 +13895,9 @@
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-            "pushed_at": "2025-01-10T13:37:08Z",
+            "pushed_at": "2025-01-15T18:33:34Z",
             "homepage": "https://nf-co.re/funcscan",
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+            "size": 19163,
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@@ -13910,7 +13910,7 @@
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@@ -13933,7 +13933,7 @@
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@@ -14735,8 +14735,8 @@
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@@ -17346,9 +17346,9 @@
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@@ -17361,7 +17361,7 @@
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@@ -17374,7 +17374,7 @@
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@@ -17730,8 +17730,8 @@
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@@ -18886,12 +18886,12 @@
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-            "updated_at": "2025-01-13T07:08:19Z",
-            "pushed_at": "2025-01-14T11:56:56Z",
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+            "size": 26282,
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@@ -18899,7 +18899,7 @@
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@@ -18917,9 +18917,9 @@
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@@ -18951,7 +18951,7 @@
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@@ -21144,7 +21144,7 @@
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@@ -21252,7 +21252,7 @@
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@@ -21292,13 +21292,16 @@
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-                "defaultBranch": null
+                "defaultBranch": [
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             "allow_forking": true,
             "is_template": false,
             "web_commit_signoff_required": false,
@@ -42123,7 +42137,7 @@
             ],
             "visibility": "public",
             "forks": 22,
-            "open_issues": 34,
+            "open_issues": 35,
             "watchers": 7,
             "default_branch": "master",
             "temp_clone_token": "",
@@ -42226,7 +42240,7 @@
             "TEMPLATE_branch_protection_enforce_admins": -1,
             "TEMPLATE_restrict_push": true,
             "has_required_topics": true,
-            "open_pr_count": 8,
+            "open_pr_count": 9,
             "repository_url": "https://github.com/nf-core/seqinspector",
             "contributors": [
                 {
@@ -44273,7 +44287,7 @@
             "has_wiki": false,
             "has_pages": false,
             "has_discussions": false,
-            "forks_count": 3,
+            "forks_count": 4,
             "archived": false,
             "disabled": false,
             "open_issues_count": 3,
@@ -44282,7 +44296,7 @@
             "web_commit_signoff_required": false,
             "topics": [],
             "visibility": "public",
-            "forks": 3,
+            "forks": 4,
             "open_issues": 3,
             "watchers": 2,
             "default_branch": "dev",
@@ -44316,7 +44330,7 @@
                     "status": "disabled"
                 }
             },
-            "network_count": 3,
+            "network_count": 4,
             "subscribers_count": 159,
             "team_contributors_permission_push": true,
             "team_contributors_permission_admin": false,
@@ -44804,10 +44818,10 @@
             "fork": false,
             "url": "https://api.github.com/repos/nf-core/taxprofiler",
             "created_at": "2022-02-18T06:56:10Z",
-            "updated_at": "2025-01-13T06:54:19Z",
-            "pushed_at": "2025-01-14T15:08:56Z",
+            "updated_at": "2025-01-15T09:26:07Z",
+            "pushed_at": "2025-01-15T11:30:16Z",
             "homepage": "https://nf-co.re/taxprofiler",
-            "size": 16501,
+            "size": 16377,
             "stargazers_count": 134,
             "watchers_count": 134,
             "language": "Nextflow",
@@ -44820,7 +44834,7 @@
             "forks_count": 38,
             "archived": false,
             "disabled": false,
-            "open_issues_count": 46,
+            "open_issues_count": 45,
             "allow_forking": true,
             "is_template": false,
             "web_commit_signoff_required": false,
@@ -44839,7 +44853,7 @@
             ],
             "visibility": "public",
             "forks": 38,
-            "open_issues": 46,
+            "open_issues": 45,
             "watchers": 134,
             "default_branch": "master",
             "temp_clone_token": "",
@@ -45122,24 +45136,24 @@
             "TEMPLATE_branch_protection_enforce_admins": -1,
             "TEMPLATE_restrict_push": true,
             "has_required_topics": true,
-            "open_pr_count": 7,
+            "open_pr_count": 6,
             "repository_url": "https://github.com/nf-core/taxprofiler",
             "contributors": [
                 {
                     "name": "jfy133",
-                    "count": 997,
+                    "count": 1006,
                     "avatar_url": "https://avatars.githubusercontent.com/u/17950287?v=4"
                 },
-                {
-                    "name": "sofstam",
-                    "count": 395,
-                    "avatar_url": "https://avatars.githubusercontent.com/u/91951607?v=4"
-                },
                 {
                     "name": "LilyAnderssonLee",
-                    "count": 366,
+                    "count": 401,
                     "avatar_url": "https://avatars.githubusercontent.com/u/64467552?v=4"
                 },
+                {
+                    "name": "sofstam",
+                    "count": 400,
+                    "avatar_url": "https://avatars.githubusercontent.com/u/91951607?v=4"
+                },
                 {
                     "name": "Midnighter",
                     "count": 106,
@@ -45221,10 +45235,10 @@
                     "avatar_url": "https://avatars.githubusercontent.com/u/47026226?v=4"
                 }
             ],
-            "released_after_tools": false,
-            "head_sha": "0af416a24b4bcf41b9e2b5288c31c05280ca7994",
+            "released_after_tools": true,
+            "head_sha": "80d2fcce1daeb95c69f16832ca253dbaeac8a11e",
             "last_release_is_head": true,
-            "last_release_vs_default_compare_url": "https://github.com/nf-core/taxprofiler/compare/0af416a24b4bcf41b9e2b5288c31c05280ca7994...0af416a24b4bcf41b9e2b5288c31c05280ca7994",
+            "last_release_vs_default_compare_url": "https://github.com/nf-core/taxprofiler/compare/80d2fcce1daeb95c69f16832ca253dbaeac8a11e...80d2fcce1daeb95c69f16832ca253dbaeac8a11e",
             "commits_to_dev": 30,
             "is_DSL2": true,
             "has_nf_test": false,
@@ -45233,7 +45247,10 @@
                 "nf-schema@2.1.2"
             ],
             "master_nextflow_config_manifest": {
-                "defaultBranch": null
+                "defaultBranch": [
+                    "defaultBranch   = 'master'",
+                    "master"
+                ]
             },
             "dev_nextflow_config_plugins": [
                 "nf-schema@2.1.2"
@@ -45245,6 +45262,80 @@
                 ]
             },
             "releases": [
+                {
+                    "tag_name": "1.2.2",
+                    "published_at": "2025-01-15T09:38:49Z",
+                    "tag_sha": "80d2fcce1daeb95c69f16832ca253dbaeac8a11e",
+                    "has_schema": true,
+                    "doc_files": [
+                        "docs/output.md",
+                        "docs/usage.md",
+                        "docs/usage/faq-troubleshooting.md",
+                        "docs/usage/tutorials.md"
+                    ],
+                    "components": {
+                        "modules": [
+                            "adapterremoval",
+                            "bbmap_bbduk",
+                            "bowtie2_align",
+                            "bowtie2_build",
+                            "bracken_bracken",
+                            "bracken_combinebrackenoutputs",
+                            "cat_fastq",
+                            "centrifuge_centrifuge",
+                            "centrifuge_kreport",
+                            "diamond_blastx",
+                            "falco",
+                            "fastp",
+                            "fastqc",
+                            "filtlong",
+                            "ganon_classify",
+                            "ganon_report",
+                            "ganon_table",
+                            "gunzip",
+                            "kaiju_kaiju",
+                            "kaiju_kaiju2krona",
+                            "kaiju_kaiju2table",
+                            "kmcp_profile",
+                            "kmcp_search",
+                            "kraken2_kraken2",
+                            "krakentools_combinekreports",
+                            "krakentools_kreport2krona",
+                            "krakenuniq_preloadedkrakenuniq",
+                            "krona_ktimporttaxonomy",
+                            "krona_ktimporttext",
+                            "malt_run",
+                            "megan_rma2info",
+                            "metaphlan_mergemetaphlantables",
+                            "metaphlan_metaphlan",
+                            "minimap2_align",
+                            "minimap2_index",
+                            "motus_merge",
+                            "motus_profile",
+                            "multiqc",
+                            "nanoq",
+                            "nonpareil_curve",
+                            "nonpareil_nonpareil",
+                            "nonpareil_nonpareilcurvesr",
+                            "nonpareil_set",
+                            "porechop_abi",
+                            "porechop_porechop",
+                            "prinseqplusplus",
+                            "samtools_fastq",
+                            "samtools_index",
+                            "samtools_stats",
+                            "samtools_view",
+                            "taxpasta_merge",
+                            "taxpasta_standardise",
+                            "untar"
+                        ],
+                        "subworkflows": [
+                            "utils_nextflow_pipeline",
+                            "utils_nfcore_pipeline",
+                            "utils_nfschema_plugin"
+                        ]
+                    }
+                },
                 {
                     "tag_name": "1.2.1",
                     "published_at": "2024-11-28T15:09:47Z",
@@ -46095,8 +46186,8 @@
                 },
                 {
                     "tag_name": "dev",
-                    "published_at": "2025-01-14T15:08:52Z",
-                    "tag_sha": "c16ea838c429a65724150008654cb7a4d1849cdc",
+                    "published_at": "2025-01-15T11:30:14Z",
+                    "tag_sha": "071bcfbc682456d20c2d329d76dc37dcd9ffcad9",
                     "has_schema": true,
                     "doc_files": [
                         "docs/output.md",
@@ -46763,7 +46854,7 @@
             "has_wiki": false,
             "has_pages": false,
             "has_discussions": false,
-            "forks_count": 4,
+            "forks_count": 5,
             "archived": false,
             "disabled": false,
             "open_issues_count": 4,
@@ -46781,7 +46872,7 @@
                 "variant-annotation"
             ],
             "visibility": "public",
-            "forks": 4,
+            "forks": 5,
             "open_issues": 4,
             "watchers": 10,
             "default_branch": "main",
@@ -46815,7 +46906,7 @@
                     "status": "disabled"
                 }
             },
-            "network_count": 4,
+            "network_count": 5,
             "subscribers_count": 10,
             "team_contributors_permission_push": false,
             "team_contributors_permission_admin": false,
@@ -46913,9 +47004,9 @@
             "url": "https://api.github.com/repos/nf-core/variantbenchmarking",
             "created_at": "2023-12-07T10:56:32Z",
             "updated_at": "2025-01-14T10:06:03Z",
-            "pushed_at": "2025-01-14T15:53:15Z",
+            "pushed_at": "2025-01-15T14:52:59Z",
             "homepage": "https://nf-co.re/variantbenchmarking",
-            "size": 3998,
+            "size": 4012,
             "stargazers_count": 14,
             "watchers_count": 14,
             "language": "Nextflow",
@@ -46928,7 +47019,7 @@
             "forks_count": 8,
             "archived": false,
             "disabled": false,
-            "open_issues_count": 17,
+            "open_issues_count": 18,
             "allow_forking": true,
             "is_template": false,
             "web_commit_signoff_required": false,
@@ -46940,7 +47031,7 @@
             ],
             "visibility": "public",
             "forks": 8,
-            "open_issues": 17,
+            "open_issues": 18,
             "watchers": 14,
             "default_branch": "dev",
             "temp_clone_token": "",
diff --git a/sites/main-site/src/content/events/2025/hackathon-march-2025/index.mdx b/sites/main-site/src/content/events/2025/hackathon-march-2025/index.mdx
index 27e034c7ca..4c844b61f2 100644
--- a/sites/main-site/src/content/events/2025/hackathon-march-2025/index.mdx
+++ b/sites/main-site/src/content/events/2025/hackathon-march-2025/index.mdx
@@ -84,6 +84,7 @@ Even if you are attending a local site you will still join everyone online in Ga
 | 🇸🇪 Sweden         | Uppsala    | Uppsala University                             | [Read more](/events/2025/hackathon-march-2025/uppsala-university)                                  |
 | 🇨🇭 Switzerland    | Zürich     | Kinderspital Zürich                            | [Read more](/events/2025/hackathon-march-2025/kinderspital-zurich)                                 |
 | 🇬🇧 United Kingdom | Bristol    | University of Bristol                          | [Read more](/events/2025/hackathon-march-2025/university-of-bristol)                               |
+| 🇬🇧 United Kingdom | Dundee     | James Hutton Institute                         | [Read more](/events/2025/hackathon-march-2025/james-hutton-institute)                              |
 | 🇬🇧 United Kingdom | London     | University College London                      | [Read more](/events/2025/hackathon-march-2025/university-college-london)                           |
 | 🇺🇸 United States  | Boston     | Harvard Chan School                            | [Read more](/events/2025/hackathon-march-2025/harvard-chan-school)                                 |
 | 🇺🇸 United States  | Dallas     | UT Dallas                                      | [Read more](/events/2025/hackathon-march-2025/ut-dallas)                                           |
diff --git a/sites/main-site/src/content/events/2025/hackathon-march-2025/james-hutton-institute.mdx b/sites/main-site/src/content/events/2025/hackathon-march-2025/james-hutton-institute.mdx
new file mode 100644
index 0000000000..5e88ce1904
--- /dev/null
+++ b/sites/main-site/src/content/events/2025/hackathon-march-2025/james-hutton-institute.mdx
@@ -0,0 +1,22 @@
+---
+title: 'Hackathon - March 2025 (James Hutton Institute)'
+subtitle: 'Local node of the nf-core hackathon at the James Hutton Institute, UK'
+shortTitle: '🇬🇧 James Hutton Institute'
+type: 'hackathon'
+startDate: '2025-03-24'
+startTime: '09:00+00:00'
+endDate: '2025-03-26'
+endTime: '17:00+00:00'
+locations:
+    - name: James Hutton Institute
+      links:
+          - https://www.hutton.ac.uk/
+      geoCoordinates: [56.457404383182634, -3.070138891914946]
+layout: '@layouts/events/HackathonMarch2025.astro'
+---
+
+Attendees from outside the James Hutton Institute **can** attend.
+
+Main contact: Moray Smith ([moray.smith@hutton.ac.uk](mailto:moray.smith@hutton.ac.uk))
+
+Venue not yet booked, please check back later for more information.