From bedf765902f693da1ddc80ad2e74f1268d7d28a4 Mon Sep 17 00:00:00 2001 From: FranBonath Date: Wed, 20 Mar 2024 15:40:14 +0100 Subject: [PATCH] trying to fix links --- .../nf_core_basic_training/add_custom_module.md | 4 ++-- .../nf_core_basic_training/add_nf_core_module.md | 4 ++-- .../nf_core_basic_training/gitpod_environment.md | 4 ++-- .../contributing/nf_core_basic_training/index.md | 14 +++++++------- .../nf_core_basic_training/linting_modules.md | 4 ++-- .../nf_core_basic_training/nf_core_create_tool.md | 4 ++-- .../nf_core_basic_training/nf_schema.md | 4 ++-- .../template_walk_through.md | 4 ++-- 8 files changed, 21 insertions(+), 21 deletions(-) diff --git a/src/content/docs/contributing/nf_core_basic_training/add_custom_module.md b/src/content/docs/contributing/nf_core_basic_training/add_custom_module.md index e78c92cc6b..a662e7461d 100644 --- a/src/content/docs/contributing/nf_core_basic_training/add_custom_module.md +++ b/src/content/docs/contributing/nf_core_basic_training/add_custom_module.md @@ -303,10 +303,10 @@ In the directory `exercise_6` you will find the custom script `print_hello.py`, :::

- + < go to Chapter 4 - + go to Chapter 6 >

diff --git a/src/content/docs/contributing/nf_core_basic_training/add_nf_core_module.md b/src/content/docs/contributing/nf_core_basic_training/add_nf_core_module.md index 3612c0492f..e814d7d6ec 100644 --- a/src/content/docs/contributing/nf_core_basic_training/add_nf_core_module.md +++ b/src/content/docs/contributing/nf_core_basic_training/add_nf_core_module.md @@ -454,10 +454,10 @@ comparison to simple nextflow pipeline from the basic Nextflow training would be :::

- + < go to Chapter 3 - + go to Chapter 5 >

diff --git a/src/content/docs/contributing/nf_core_basic_training/gitpod_environment.md b/src/content/docs/contributing/nf_core_basic_training/gitpod_environment.md index fc36f7ebba..5f2cf60e72 100644 --- a/src/content/docs/contributing/nf_core_basic_training/gitpod_environment.md +++ b/src/content/docs/contributing/nf_core_basic_training/gitpod_environment.md @@ -69,10 +69,10 @@ To save any file locally from the explorer panel, right-click the file and selec

- + < go to training index - + go to Chapter 2 >

diff --git a/src/content/docs/contributing/nf_core_basic_training/index.md b/src/content/docs/contributing/nf_core_basic_training/index.md index 48492afcac..09b8a27dfb 100644 --- a/src/content/docs/contributing/nf_core_basic_training/index.md +++ b/src/content/docs/contributing/nf_core_basic_training/index.md @@ -35,7 +35,7 @@ This training can be followed either based on this documentation alone, or via a ## Training sessions

- + Chapter 1 - setup the GitPod environment

@@ -43,7 +43,7 @@ This training can be followed either based on this documentation alone, or via a The course is using gitpod in order to avoid the time expense for downloading and installing tools and data.

- + Chapter 2 - Creating a new nf-core pipeline from the nf-core template

@@ -59,7 +59,7 @@ c) Running the pipeline using the test profile d) Linting the pipeline

- + Chapter 3 - Exploring the nf-core template files

@@ -67,22 +67,22 @@ d) Linting the pipeline The template contains a range of important files and directories. This chapter is giving explanations to all the template content important to beginners.

- + Chapter 4 - Adding a nf-core module to your pipeline

- + Chapter 5 - Adding a local custom module to your pipeline

- + Chapter 6 - Working with Nextflow schema

- + Chapter 7 - Linting your modules

diff --git a/src/content/docs/contributing/nf_core_basic_training/linting_modules.md b/src/content/docs/contributing/nf_core_basic_training/linting_modules.md index 2f627e29c0..8aa11dfb67 100644 --- a/src/content/docs/contributing/nf_core_basic_training/linting_modules.md +++ b/src/content/docs/contributing/nf_core_basic_training/linting_modules.md @@ -14,10 +14,10 @@ nf-core modules lint --all ```

- + < go to Chapter 6 - + go to training index >

diff --git a/src/content/docs/contributing/nf_core_basic_training/nf_core_create_tool.md b/src/content/docs/contributing/nf_core_basic_training/nf_core_create_tool.md index 79846a01ad..e15da678ac 100644 --- a/src/content/docs/contributing/nf_core_basic_training/nf_core_create_tool.md +++ b/src/content/docs/contributing/nf_core_basic_training/nf_core_create_tool.md @@ -359,10 +359,10 @@ nf-core lint :::

- + < go to Chapter 1 - + go to Chapter 3 >

diff --git a/src/content/docs/contributing/nf_core_basic_training/nf_schema.md b/src/content/docs/contributing/nf_core_basic_training/nf_schema.md index 3c2e267ee6..1c3a4b42af 100644 --- a/src/content/docs/contributing/nf_core_basic_training/nf_schema.md +++ b/src/content/docs/contributing/nf_core_basic_training/nf_schema.md @@ -64,10 +64,10 @@ Here in the schema editor you can edit: :::

- + < go to Chapter 5 - + go to Chapter 7 >

diff --git a/src/content/docs/contributing/nf_core_basic_training/template_walk_through.md b/src/content/docs/contributing/nf_core_basic_training/template_walk_through.md index a24fea20cc..2f2b74b021 100644 --- a/src/content/docs/contributing/nf_core_basic_training/template_walk_through.md +++ b/src/content/docs/contributing/nf_core_basic_training/template_walk_through.md @@ -198,10 +198,10 @@ This file keeps track of modules installed using nf-core tools from the nf-core/ :::

- + < go to Chapter 2 - + go to Chapter 4 >