same mutation multiple times

[pratibha-kadam]

Hello Developers,

I have run the MTBseq pipeline for my 6000 TB samples.

I noticed that some mutations are repeated in the same .tab file.

I don't understand why is it so,

So shall I consider them as

one mutation or are they separate?

[cutpatel]

Hi, unfortunately I cannot see your screenshot.
Do you maybe mean multi snps affecting the same codon?
At the moment these are reported on separate lines and the codon change may be therefore incorrect.
We will soon release a new version which will take care of this.