From 310955acd6747738741dd404d0140824ef518eda Mon Sep 17 00:00:00 2001 From: Damien Goutte-Gattat Date: Sun, 10 Nov 2024 15:09:01 +0000 Subject: [PATCH] Use ODK 1.5.3 in GitHub Actions workflows. Recent changes in the SSSOM pipelines require SSSOM-CLI's `--update-from-ontology` option which was added in SSSOM-Java 0.7.9, which itself was included in ODK 1.5.3. --- .github/workflows/diff.yml | 8 ++++---- .github/workflows/qc.yml | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/.github/workflows/diff.yml b/.github/workflows/diff.yml index 0d87dc2803..3db66357dd 100644 --- a/.github/workflows/diff.yml +++ b/.github/workflows/diff.yml @@ -61,7 +61,7 @@ jobs: needs: [branch_status] if: ${{ github.event.issue.pull_request }} runs-on: ubuntu-latest - container: obolibrary/odkfull:v1.5 + container: obolibrary/odkfull:v1.5.3 steps: - uses: khan/pull-request-comment-trigger@v1.1.0 id: check @@ -94,7 +94,7 @@ jobs: needs: [branch_status] if: ${{ github.event.issue.pull_request }} runs-on: ubuntu-latest - container: obolibrary/odkfull:v1.5 + container: obolibrary/odkfull:v1.5.3 steps: - uses: khan/pull-request-comment-trigger@v1.1.0 id: check @@ -122,7 +122,7 @@ jobs: needs: [branch_status] if: ${{ github.event.issue.pull_request }} runs-on: ubuntu-latest - container: obolibrary/odkfull:v1.5 + container: obolibrary/odkfull:v1.5.3 steps: - uses: khan/pull-request-comment-trigger@v1.1.0 id: check @@ -147,7 +147,7 @@ jobs: diff_classification: needs: [classify_branch, classify_main] runs-on: ubuntu-latest - container: obolibrary/odkfull:v1.5 + container: obolibrary/odkfull:v1.5.3 steps: - uses: khan/pull-request-comment-trigger@v1.1.0 id: check diff --git a/.github/workflows/qc.yml b/.github/workflows/qc.yml index 48b4fc7eea..fdbf27bf8f 100644 --- a/.github/workflows/qc.yml +++ b/.github/workflows/qc.yml @@ -23,7 +23,7 @@ jobs: ontology_qc: # The type of runner that the job will run on runs-on: ubuntu-latest - container: obolibrary/odkfull:v1.5.2 + container: obolibrary/odkfull:v1.5.3 # Steps represent a sequence of tasks that will be executed as part of the job steps: # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it