From e22380dfcdbc1a3a6d1665160040307e3da35ab7 Mon Sep 17 00:00:00 2001 From: Aleix Puig <94959119+aleixpuigb@users.noreply.github.com> Date: Fri, 20 Sep 2024 13:17:16 +0100 Subject: [PATCH] Fixes #2914 revise vasa recta (#3349) * Fixes #2914 revise vasa recta Fixes #2914 revise vasa recta * Relabel missing terms * Fix dbxref --- src/ontology/uberon-edit.obo | 27 ++++++++++++--------------- 1 file changed, 12 insertions(+), 15 deletions(-) diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index a28d01127..6ec4cd449 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -91082,17 +91082,15 @@ property_value: taxon_notes "Piriform cortical regions are present in the brains [Term] id: UBERON:0004726 name: vasa recta -def: "In the blood supply of the kidney, the vasa recta renis (or straight arteries of kidney, or straight arterioles of kidney) form a series of straight capillaries in the medulla. They lie parallel to the loop of Henle. These vessels branch off the efferent arterioles of juxtamedullary nephrons (those nephrons closest to the medulla), enter the medulla, and surround the loop of Henle." [Wikipedia:Vasa_recta] +def: "A group of microvessels that are part of the kidney. A vasa recta has a hairpin-like shape, entering the renal medulla as the straight arterioles and surrounds the loop of Henle, forming a capillary network. Finally it leaves the renal medulla to ascend to the cortex as the straight venules. The primary function of the vasa recta is to facilitate countercurrent exchange, which is essential for the kidney's ability to concentrate urine" [PMID:23126245, Wikipedia:Vasa_recta] subset: pheno_slim -synonym: "arteria recta" RELATED [Wikipedia:Vasa_recta] -synonym: "arteriae rectae" RELATED [Wikipedia:Vasa_recta] -synonym: "arteriolae rectae renis" EXACT OMO:0003011 [FMA:72006, FMA:TA] +synonym: "arteriolae rectae renis" NARROW OMO:0003011 [FMA:72006, FMA:TA] synonym: "arteriolae rectae renis" RELATED OMO:0003011 [Wikipedia:Vasa_recta] synonym: "arteriolae recti" RELATED [Wikipedia:Vasa_recta] synonym: "kidney vasa recta" EXACT [MP:0011324] -synonym: "renal medullary capillary" EXACT [EMAPA:30043] -synonym: "set of straight arterioles of kidney" EXACT [FMA:72006] -synonym: "straight arterioles of kidney" EXACT [FMA:72006] +synonym: "renal medullary capillary" NARROW [EMAPA:30043] +synonym: "set of straight arterioles of kidney" NARROW [FMA:72006] +synonym: "straight arterioles of kidney" NARROW [FMA:72006] synonym: "vasa recta of kidney" EXACT [FMA:72006] synonym: "vasa recta renis" EXACT OMO:0003011 [FMA:72006, FMA:TA] synonym: "vasa rectae" RELATED [Wikipedia:Vasa_recta] @@ -91101,9 +91099,8 @@ xref: FMA:72006 xref: galen:ArteriaeRectae xref: MA:0002595 xref: Wikipedia:Vasa_recta -is_a: UBERON:0001140 ! renal vein +is_a: UBERON:0006544 ! kidney vasculature property_value: depiction "https://upload.wikimedia.org/wikipedia/commons/2/21/Kidney_nephron.png" xsd:anyURI -property_value: editor_note "TODO - is this a vein or set of veins? in MA it is a venous blood vessel" xsd:string [Term] id: UBERON:0004727 @@ -130066,7 +130063,7 @@ relationship: part_of UBERON:0009074 ! syrinx organ [Term] id: UBERON:0009089 -name: inner medulla vasa recta descending limb +name: inner medulla descending vasa recta xref: KUPO:0001003 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0004776 {source="KUPO"} ! inner renal medulla vasa recta @@ -130074,7 +130071,7 @@ property_value: external_ontology_notes "This class was created in order to alig [Term] id: UBERON:0009090 -name: outer medulla vasa recta descending limb +name: outer medulla descending vasa recta xref: KUPO:0001004 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0004775 {source="KUPO"} ! outer renal medulla vasa recta @@ -130082,7 +130079,7 @@ property_value: external_ontology_notes "This class was created in order to alig [Term] id: UBERON:0009091 -name: vasa recta ascending limb +name: ascending vasa recta xref: KUPO:0001005 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0004726 {source="KUPO"} ! vasa recta @@ -130090,7 +130087,7 @@ property_value: external_ontology_notes "This class was created in order to alig [Term] id: UBERON:0009092 -name: inner medulla vasa recta ascending limb +name: inner medulla ascending vasa recta xref: KUPO:0001006 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0004776 {source="KUPO"} ! inner renal medulla vasa recta @@ -130098,7 +130095,7 @@ property_value: external_ontology_notes "This class was created in order to alig [Term] id: UBERON:0009093 -name: outer medulla vasa recta ascending limb +name: outer medulla ascending vasa recta xref: KUPO:0001007 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0004775 {source="KUPO"} ! outer renal medulla vasa recta @@ -130697,7 +130694,7 @@ relationship: part_of UBERON:0002113 ! kidney [Term] id: UBERON:0009202 -name: vasa recta descending limb +name: descending vasa recta xref: KUPO:0001002 is_a: UBERON:0000064 ! organ part relationship: part_of UBERON:0004726 {source="KUPO"} ! vasa recta