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    13 repositories

    • tools_w4m

      Public
      Repository containing the xml wrappers for tools developped by the MetaboHUB-MetaToul-FluxoMet team
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • IsoDesign

      Public
      The objective of IsoDesign 2.0 is to provide simple and rapid 13C tracer design. Leveraging the influx_si software and through iterative minimization of in silico calculated fluxes standard deviations (SD), IsoDesign 2.0 will help researchers in selecting the best compromise between flux precision and tracer prices.
      Python
      •
      GNU General Public License v3.0
      •1•1•0•1•Updated Jan 21, 2025Jan 21, 2025

    • GraphstatsR

      Public
      A shiny app allowing users to generate advanced interactive graphics and statistical tests. This repo is a mirror of https://forgemia.inra.fr/etienne.rifa/graphstats/
      R
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Jan 15, 2025Jan 15, 2025

    • OmniQuant

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

    • RTMet

      Public
      RTMet is a data workflow to process FIA-MS data coming from a bioreactor, find metabolites and fluxes, and send a feedback command to the system.
      real-timemetabolomicsmass-spectrometrycylcmetabolomics-pipelinefie-hrmsfie-ms
      Python
      •
      GNU General Public License v3.0
      •0•2•14•1•Updated Jul 28, 2024Jul 28, 2024

    • PhysioFit

      Public
      Estimation of extracellular fluxes and growth rate
      Python
      •
      GNU General Public License v3.0
      •5•0•0•0•Updated May 29, 2024May 29, 2024

    • Skyline2IsoCor

      Public
      Preparing skyline output data for use in IsoCor software
      Python
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Mar 29, 2024Mar 29, 2024

    • MSReader

      Public
      Package for parsing a Tracefinder file containing processed Mass Spectrometry data
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Apr 3, 2023Apr 3, 2023

    • influx

      Public
      Scientific software for flux and metabolite estimation from isotopically labeled data
      HTML
      •2•0•0•0•Updated Mar 9, 2023Mar 9, 2023

    • PhysioFit_Data_Manager

      Public
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 25, 2022Oct 25, 2022

    • NmrQuant

      Public
      Metabolite concentration quantification from 1D Proton NMR integration areas
      Python
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Jun 23, 2022Jun 23, 2022

    • PascalTriangle

      Public
      Python software to compute biases between experimental and theoretical values of isotopologue distributions during production of biological standards using controlled labeling patterns
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Apr 7, 2022Apr 7, 2022

    • Isoplot

      Public
      Generate figures from IsoCor output (Mass spectrometry labelling experiments)
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Dec 7, 2021Dec 7, 2021