Repositories list

• px-submission-tool

  Public
  ProteomeXchange data submission tool

  Java

  •6•3•8•0•Updated Jan 10, 2025Jan 10, 2025

• opentargets

  Public
  Repository of opentargets scripts to move data from PRIDE expression to OpenTargets.

  Apache License 2.0

  •1•0•1•0•Updated Jan 10, 2025Jan 10, 2025

• px-web-app

  Public
  CSS

  •0•0•0•0•Updated Jan 10, 2025Jan 10, 2025

• pride-resources

  Public
  PRIDE Resources Forum (https://github.com/PRIDE-Archive/pride-resources/discussions)

  discussiondocumentationpride

  Apache License 2.0

  •1•1•0•1•Updated Jan 10, 2025Jan 10, 2025

• pride-ontology

  Public
  The PRIDE ontology

  Apache License 2.0

  •12•1•0•1•Updated Jan 9, 2025Jan 9, 2025

• file-download-stat

  Public
  A pipeline to calculate number of file downloads

  Python

  •1•0•3•0•Updated Jan 9, 2025Jan 9, 2025

• pridepy

  Public
  Python client for PRIDE Archive Rest API.

  pythonproteomicsmass-spectrometry+ 3pridepride-databasepython-client

  Python

  •

  Apache License 2.0

  •4•19•1•0•Updated Jan 8, 2025Jan 8, 2025

• pride-utilities

  Public
  PRIDE-Utilities library contains code shared by many of PRIDE Tools and Libraries.

  Java

  •3•0•0•1•Updated Jan 3, 2025Jan 3, 2025

• xi-mzidentml-converter

  Public
  Python

  •

  Apache License 2.0

  •6•0•8•0•Updated Dec 12, 2024Dec 12, 2024

• pride-web

  Public
  PRIDE Resources Web application

  HTML

  •5•2•34•0•Updated Dec 2, 2024Dec 2, 2024

• xiview-api

  Public
  xiview-api provides REST endpoints to access crosslinking resources in PRIDE

  Python

  •

  Apache License 2.0

  •3•0•1•0•Updated Nov 28, 2024Nov 28, 2024

• px-submission-core

  Public
  ProteomeXchange data submission model

  Java

  •1•0•0•1•Updated Nov 21, 2024Nov 21, 2024

• bluesky-bot

  Public
  This is an API to push an alert for every dataset publish in PRIDE.

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 19, 2024Nov 19, 2024

• pride-archive-api

  Public
  PRIDE Archive public Restful API

  Java

  •3•0•13•1•Updated Nov 14, 2024Nov 14, 2024

• pride-usi-viewer

  Public
  Vue

  •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

• data-provider-api

  Public
  New PRIDE data provider.

  Java

  •

  Apache License 2.0

  •1•2•0•0•Updated Oct 31, 2024Oct 31, 2024

• pubmed-id-fetcher

  Public
  Java

  •

  Apache License 2.0

  •1•0•0•0•Updated Oct 25, 2024Oct 25, 2024

• pride-chat-ui

  Public
  Vue

  •0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

• exclusions

  Public
  0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

• archive-px-xml-generator

  Public
  Java

  •

  Apache License 2.0

  •1•0•0•3•Updated Oct 11, 2024Oct 11, 2024

• xxindex

  Public
  A library to index XML files for random access.

  Java

  •5•2•1•0•Updated Oct 7, 2024Oct 7, 2024

• pride-mongodb-repo

  Public archive
  This repo contains the Repository for PRIDE mongo Database

  spring-bootmongodbproteomics+ 3mass-spectrometrypride-databasespring-mongodb

  Java

  •

  Apache License 2.0

  •1•0•0•3•Updated Oct 5, 2024Oct 5, 2024

• xiview-server

  Public
  HTML

  •2•0•0•0•Updated Sep 30, 2024Sep 30, 2024

• pride-solr-indexes

  Public archive
  This repository will store all the classes models to handle pride solr indexes.

  XSLT

  •2•0•0•2•Updated Sep 19, 2024Sep 19, 2024

• pride-solr-api-client

  Public archive
  Java

  •1•0•0•0•Updated Sep 3, 2024Sep 3, 2024

• DataHarmonizer

  Public
  A standardized browser-based spreadsheet editor and validator that can be run offline and locally.

  JavaScript

  •

  MIT License

  •28•0•0•0•Updated Aug 22, 2024Aug 22, 2024

• pride-spring

  Public
  1•0•0•1•Updated Aug 13, 2024Aug 13, 2024

• pride-solr-commons

  Public archive
  Java

  •0•0•0•0•Updated Jul 16, 2024Jul 16, 2024

• pride-lorikeet

  Public
  0•0•0•0•Updated May 20, 2024May 20, 2024

• xiview-kubernetes

  Public
  0•0•0•0•Updated Apr 18, 2024Apr 18, 2024