Repositories list

• seqware-bag

  Public
  Ansible playbooks for deploying SeqWare with metadata for Bindle

  Shell

  •

  GNU General Public License v3.0

  •1•0•1•1•Updated Dec 15, 2023Dec 15, 2023

• seqware.github.com

  Public
  SeqWare home pages

  HTML

  •1•1•0•0•Updated Nov 23, 2022Nov 23, 2022

• seqware

  Public
  This is the SeqWare Project's main repo.

  bioinformaticsngsjava

  Java

  •

  GNU General Public License v3.0

  •17•28•5•0•Updated Jul 9, 2018Jul 9, 2018

• seqware_whitestar

  Public
  This is the container that houses SeqWare WhiteStar with a minimal set of dependencies

  Apache License 2.0

  •2•2•0•0•Updated Apr 11, 2018Apr 11, 2018

• seqware-sandbox

  Public
  A location where we can explore new SeqWare sub-projects, tools, and prototypes before they are ready for the main repo.

  Java

  •

  GNU General Public License v3.0

  •2•2•0•0•Updated Aug 14, 2016Aug 14, 2016

• seqware_test_environment

  Public
  Sets up a test environment for SeqWare continuous integration testing on Travis-CI

  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Aug 10, 2016Aug 10, 2016

• oozie-sge

  Public
  This is a repository for the SeqWare Oozie-SGE plugin. It lives outside of the main SeqWare repository because it's really an extension of Oozie to support SGE and not specific to SeqWare per se.

  Java

  •0•1•0•0•Updated Jun 22, 2016Jun 22, 2016

• documentation_builder

  Public
  This container builds our documentation using nanoc

  0•0•0•0•Updated May 12, 2016May 12, 2016

• unstable.seqware.io

  Public
  Repository for hosting our 1.1 docs in progress

  HTML

  •0•0•0•0•Updated May 6, 2016May 6, 2016

• seqware_full

  Public
  This is the container that houses SeqWare with a full set of dependencies including SGE, Hadoop, and Oozie

  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 30, 2015Nov 30, 2015

• public-workflows

  Public
  A place to collaborate on public SeqWare workflows

  Perl

  •3•2•1•1•Updated Jul 21, 2015Jul 21, 2015

• portal

  Public
  Provided as-is, this is the unsupported SeqWare Portal as of the 1.1.0-beta

  0•0•0•0•Updated Jan 7, 2015Jan 7, 2015

• queryengine

  Public
  A HBase backed variant database for performing queries on VCF-style data

  Java

  •

  GNU General Public License v3.0

  •1•4•0•0•Updated Apr 2, 2014Apr 2, 2014