DESCRIPTION

Package: PathAnalyser
Title: ER & HER2 Pathway Activity Analysis For Breast Cancer
    Transcriptomic Datasets
Version: 1.0.0
Authors@R: c(
    person("Taniya", "Pal", , "Taniya.Pal.094@cranfield.ac.uk", role = "aut"),
    person("Rishabh", "Kaushik", , "rishabh.kaushik.126@cranfield.ac.uk", role = "aut"),
    person("Yi-Hsuan", "Lee", , "yi-hsuan.lee@cranfield.ac.uk", role = "aut"),
    person("Ozlem", "Karadeniz", , "ozlem.karadeniz.283@cranfield.ac.uk", role = "aut"),
    person("Justice", "Iheanyichi", , "j.iheanyichi.616@cranfield.ac.uk", role = "aut"),
    person("Anisha", "Thind", , "a.thind@cranfield.ac.uk", role = c("aut", "cre")),
    person("Alexey", "Larionov", , "alexey.larionov@cranfield.ac.uk", role = "dgs"),
    person("Cranfield University", role = "cph")
  )
Description: PathAnalyser provides an assessment of molecular pathway
    activity in transcriptomic datasets. The classification algorithm
    employed by PathAnalyser implements Gene GSVA to classify samples in a
    transcriptomic dataset by pathway activity using a gene signature.
    Currently, the package provides built-in data for assessment of ER &
    HER2 pathway activity in breast cancer transcriptomic datasets,
    however the PathAnalyser functionality could also be applied to gene
    signatures and/or transcriptomic datasets in non-oncological contexts.
License: MIT + file LICENSE
URL: https://github.com/ozlemkaradeniz/PathAnalyser
BugReports: https://github.com/ozlemkaradeniz/PathAnalyser/issues
Depends: 
    GSVA,
    R (>= 2.10)
biocView:
Imports: 
    edgeR,
    ggfortify,
    ggplot2,
    limma,
    plotly,
    reader,
    reshape2
Suggests: 
    BiocStyle,
    knitr,
    rmarkdown,
    testthat,
    magick, 
    qpdf
VignetteBuilder: 
    knitr
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.2.9000